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|located_in=
|located_in=
|name=pineal body
|name=pineal body
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0015238
|part_of=UBERON:0015238

Latest revision as of 17:23, 12 September 2014

Name:pineal body
Namespace:FANTOM
Definition:"The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_gland]
Xrefs:
links:

AAO:0010549
ABA:PIN
BM:P
BTO:0001067
EFO:0000865
EHDAA2:0001466
EHDAA:7523
EMAPA:18778
EV:0100131
EV:0100221
FMA:62033
GAID:453
galen:PinealGland
[1]
[2]
MA:0000175
MAT:0000448
MESH:A.06.407.635
ncithesaurus:Pineal_Gland
NIF_GrossAnatomy:birnlex_1184
NIF_GrossAnatomy:nlx_anat_1010009
OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
SCTID:181126002
TAO:0000019
VHOG:0000051
XAO:0000160

ZFA:0000019
Synonyms: "corpus pineale" EXACT []
"epiphysis" RELATED [ZFA:0000019]
"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
"glandula pinealis" EXACT [FMA:TA]
"glandula pinealis" EXACT [FMA:62033, FMA:TA]
"pineal gland" EXACT [FMA:62033]
"pineal organ" EXACT [ZFA:0000019]
Comments:AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
Alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ)
part_of:UBERON:0015238(pineal complex)



Children

derives from:FF:0010160 (human pineal gland - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_842633804e145228aa5bd41c0ffb3985p@chr12:99734965..99734976, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr5:119799539..119799543,+#_842633804e145228aa5bd41c0ffb3985p13@PRR16
3.29e-195FFCP PHASE2:Hg19::chr3:54952462..54952471,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952462..54952471, -
3.29e-195FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_842633804e145228aa5bd41c0ffb3985p4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_842633804e145228aa5bd41c0ffb3985p10@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_842633804e145228aa5bd41c0ffb3985p@chr5:7338484..7338504, -
3.29e-195FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185712..17185735, +
3.29e-195FFCP PHASE2:Hg19::chr8:87751918..87751928,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751918..87751928, -
3.29e-195FFCP PHASE2:Hg19::chr8:116127086..116127103,+#_842633804e145228aa5bd41c0ffb3985p@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18063669..18063678, -
3.29e-195FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628524..56628547, -
3.29e-195FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628548..56628553, -
3.29e-195FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_842633804e145228aa5bd41c0ffb3985p7@TULP4
3.29e-195FFCP PHASE1:Hg19::chr20:44991864..44991887,-#_842633804e145228aa5bd41c0ffb3985p10@SLC35C2
3.29e-195FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_842633804e145228aa5bd41c0ffb3985p5@AANAT
3.29e-195FFCP PHASE1:Hg19::chr8:135473748..135473753,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473748..135473753, -
3.29e-195FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_842633804e145228aa5bd41c0ffb3985p1@ENST00000457625
3.29e-195FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_842633804e145228aa5bd41c0ffb3985p@chr12:15134610..15134617, +
3.29e-195FFCP PHASE1:Hg19::chr7:9228468..9228494,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9228468..9228494, -
3.29e-195FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_842633804e145228aa5bd41c0ffb3985p32@DMD
3.29e-195FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_842633804e145228aa5bd41c0ffb3985p@chr1:204667243..204667248, +
3.29e-195FFCP PHASE2:Hg19::chr2:17075761..17075773,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17075761..17075773, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473983..135473986, -
3.29e-195FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_842633804e145228aa5bd41c0ffb3985p@chr2:108602341..108602352, +
3.29e-195FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_842633804e145228aa5bd41c0ffb3985p@chr9:92310419..92310432, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860753..99860764, -
3.29e-195FFCP PHASE1:Hg19::chr12:55422565..55422604,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422565..55422604, +
3.29e-195FFCP PHASE2:Hg19::chr4:20985690..20985695,-#_842633804e145228aa5bd41c0ffb3985p38@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9194488..9194491, -
3.29e-195FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_842633804e145228aa5bd41c0ffb3985p10@PRR16
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr11:18040537..18040547,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18040537..18040547, -
3.29e-195FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_842633804e145228aa5bd41c0ffb3985p6@FRMPD1
3.29e-195FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr2:216447425..216447432,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr8:99033417..99033423,+#_842633804e145228aa5bd41c0ffb3985p17@MATN2
3.29e-195FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_842633804e145228aa5bd41c0ffb3985p@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_842633804e145228aa5bd41c0ffb3985p@chr9:88661694..88661709, -
3.29e-195FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_842633804e145228aa5bd41c0ffb3985p@chr12:81859007..81859036, +
3.29e-195FFCP PHASE1:Hg19::chr7:32468385..32468392,-#_842633804e145228aa5bd41c0ffb3985p@chr7:32468385..32468392, -
3.29e-195FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_842633804e145228aa5bd41c0ffb3985p@chr16:17930871..17930877, -
3.29e-195FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57907030..57907050, +
3.29e-195FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_842633804e145228aa5bd41c0ffb3985p11@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067959..18067962, -
3.29e-195FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57975398..57975401, +
3.29e-195FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_842633804e145228aa5bd41c0ffb3985p@chr3:101038595..101038604, -
3.29e-195FFCP PHASE2:Hg19::chr11:74951707..74951719,+#_842633804e145228aa5bd41c0ffb3985p9@LOC100507050
3.29e-195FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_842633804e145228aa5bd41c0ffb3985p@chr16:50898038..50898042, -
3.29e-195FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_842633804e145228aa5bd41c0ffb3985p@chr16:1210506..1210513, -
3.29e-195FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56963107..56963117, -
3.29e-195FFCP PHASE2:Hg19::chr11:84530787..84530803,+#_842633804e145228aa5bd41c0ffb3985p@chr11:84530787..84530803, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860786..99860791, -
3.29e-195FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135499228..135499260, -
3.29e-195FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650541..52650548, -
3.29e-195FFCP PHASE2:Hg19::chr6:13009334..13009341,-#_842633804e145228aa5bd41c0ffb3985p@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr2:17185712..17185735,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185712..17185735, +
3.29e-195FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422858..55422866, +
3.29e-195FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_842633804e145228aa5bd41c0ffb3985p1@ENST00000554597
3.29e-195FFCP PHASE1:Hg19::chr12:15134610..15134617,+#_842633804e145228aa5bd41c0ffb3985p@chr12:15134610..15134617, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473876..135473885, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952462..54952471, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041244..18041266, -
3.29e-195FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135521466..135521470, +
3.29e-195FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17075761..17075773, +
3.29e-195FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56962131..56962138, -
3.29e-195FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000514282
3.29e-195FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504405..135504410, -
3.29e-195FFCP PHASE1:Hg19::chr16:51175701..51175708,-#_842633804e145228aa5bd41c0ffb3985p@chr16:51175701..51175708, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066319..18066337, -
3.29e-195FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_842633804e145228aa5bd41c0ffb3985p15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr16:18066345..18066365,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066345..18066365, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041199..18041200, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504337..135504342, -
3.29e-195FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_842633804e145228aa5bd41c0ffb3985p10@PRR16
3.29e-195FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067904..18067908, -
3.29e-195FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_842633804e145228aa5bd41c0ffb3985p2@PLCL2-AS1
3.29e-195FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_842633804e145228aa5bd41c0ffb3985p25@SPOCK1
3.29e-195FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_842633804e145228aa5bd41c0ffb3985p6@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_842633804e145228aa5bd41c0ffb3985p38@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_842633804e145228aa5bd41c0ffb3985p@chr12:99734965..99734976, -
3.29e-195FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751931..87751947, -
3.29e-195FFCP PHASE2:Hg19::chr7:9186866..9186885,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9186866..9186885, -
3.29e-195FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18063707..18063720, -
3.29e-195FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628548..56628553, -
3.29e-195FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942645..100942655, -
3.29e-195FFCP PHASE1:Hg19::chr9:25264978..25265001,+#_842633804e145228aa5bd41c0ffb3985p@chr9:25264978..25265001, +
3.29e-195FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_842633804e145228aa5bd41c0ffb3985p@chr1:45782001..45782009, +
3.29e-195FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_842633804e145228aa5bd41c0ffb3985p9@LOC100507050
3.29e-195FFCP PHASE2:Hg19::chr7:9782610..9782613,+#_842633804e145228aa5bd41c0ffb3985p@chr7:9782610..9782613, +
3.29e-195FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_842633804e145228aa5bd41c0ffb3985p@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000457625
3.29e-195FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_842633804e145228aa5bd41c0ffb3985p35@DMD
3.29e-195FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_842633804e145228aa5bd41c0ffb3985p@chr12:6956383..6956390, +
3.29e-195FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_842633804e145228aa5bd41c0ffb3985p@chr11:84530787..84530803, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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