UBERON:0002544: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=digit | |name=digit | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0012140;;UBERON:0012354;;UBERON:5002544 | |part_of=UBERON:0012140;;UBERON:0012354;;UBERON:5002544 | ||
Latest revision as of 17:33, 12 September 2014
| Name: | digit | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)] | ||
| Xrefs: |
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| Synonyms: | "limb digit" EXACT [MA:0000690] | ||
| Comments: | todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution]. | ||
| Alt_id: | UBERON:MIAA_0000285-XAO_0003035-XAO_0003036 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005881(limb outgrowth) |
|---|---|
| part_of: | UBERON:0012140(digitopodium region),UBERON:0012354(acropodium region),UBERON:5002544(digit plus metapodial segment) |
Children
| part of: | UBERON:0009551 (distal segment of digit) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10273-104E3
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10329-105B5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002544 (digit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
