UBERON:0003860: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=hindlimb mesenchyme | |name=hindlimb mesenchyme | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002103 | |part_of=UBERON:0002103 | ||
Latest revision as of 17:41, 12 September 2014
| Name: | hindlimb mesenchyme | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"hind limb mesenchyme" EXACT [OBOL:automatic] "inferior member mesenchyme" EXACT [OBOL:automatic] "lower extremity mesenchyme" EXACT [OBOL:automatic] "mesenchyme of hind limb" EXACT [OBOL:automatic] "mesenchyme of hindlimb" EXACT [OBOL:automatic] "mesenchyme of inferior member" EXACT [OBOL:automatic] "mesenchyme of lower extremity" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009749(limb mesenchyme) |
|---|---|
| part_of: | UBERON:0002103(hindlimb) |
Children
| is a: | UBERON:0003321 (mesenchyme of knee),UBERON:0005254 (upper leg mesenchyme),UBERON:0010886 (hindlimb bone pre-cartilage condensation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003860 (hindlimb mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_d9f190c437e183a803680567bc1ad602 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1a5b0731d68fc321c5a9398d00114350 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1a5b0731d68fc321c5a9398d00114350 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1a5b0731d68fc321c5a9398d00114350 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_58b366c4e2580ac5ecee860921f9f133 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_d5ecdc2f572b267ad2c9988c9a14b172 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1ee | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1ee | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1ee | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1ee | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_687344803550c04473a7e83a5b09e1ee | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_687344803550c04473a7e83a5b09e1ee | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_687344803550c04473a7e83a5b09e1ee | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_687344803550c04473a7e83a5b09e1ee | p@chr1:174140324..174140335, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_3c0a6cd36f7c07a6b52b7beb4a033a59 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_55404d572ce8641763f3177541c19ba2 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_696c3149b47e90f28e3a708afbdffd58 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_4dec551650bb9de67d5edc7ea5d9f304 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_813621936717e6d12fe740d37b32f357 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_75d6b2bd8621a8b205fba85d0066e756 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_a65ce1a3f88417493b5707d5b3044b37 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88ed | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_b43459ca802e0e499137badf874c88ed | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88ed | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_b43459ca802e0e499137badf874c88ed | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11 | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_bcc7fc837cbb06ec902338b730c05f11 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_bcc7fc837cbb06ec902338b730c05f11 | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69f | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f1b25145738b02cc9efa1ae75aa2f69f | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_339339fd3dffe49fb3daa35a9d102c59 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_339339fd3dffe49fb3daa35a9d102c59 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_a55931d9d3240a6f2b412a29db98bff9 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0e | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_559060f94d05aae04da268942c0b7c0e | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0e | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_559060f94d05aae04da268942c0b7c0e | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_79a3faddbf17ec48799db0611a7e79b2 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_6980edac7558cca31fe1e8ec441cdfe1 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29da | p2@Myh4 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_0dbbd055250c6ac38386a447cbbb29da | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_72518fabca3680900dc5f17c9acd6fd0 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e | p1@Msmp |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_4ab20ce0192f5bb9ac5d76268ff8eb0e | p1@Msmp |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_77be406b09c2352ce38784e2f8a2d573 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_77be406b09c2352ce38784e2f8a2d573 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dc | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_09d8aa259ca2e1b81c44656fd5dff6dc | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_8b744744880ebe259970d937640a7da9 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_db7ca7ce0871a4ab7de099375459f618 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4f | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_f2cfdaa2f9b05f984d5298f569e14c4f | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5a | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_c413843ea50a306566bb916391cefd5a | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5e | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_3828364657ff73b01d2d909698083a5e | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8c | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_60a2d1a1c6cdb089ac6c41fda6691d8c | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8c | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_60a2d1a1c6cdb089ac6c41fda6691d8c | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5a | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_db8013070df795206300cc06055eba5a | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_a338e3f525612683ba5e0b9c6e6cbb61 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_761e359f5de3fe3295458fad64e44e47 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_761e359f5de3fe3295458fad64e44e47 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014ca | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014ca | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_3773e9b2b37d73ac00fa3a92489014ca | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_3773e9b2b37d73ac00fa3a92489014ca | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_f15c406c34bf8b68ba7f05b1756390df | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_f15c406c34bf8b68ba7f05b1756390df | p2@Siglec15 |
