UBERON:0004456: Difference between revisions
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|located_in= | |located_in= | ||
|name=entire sense organ system | |name=entire sense organ system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:46, 12 September 2014
| Name: | entire sense organ system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Sum of all sensory systems in an organism." [] | ||
| Xrefs: |
| ||
| Synonyms: | "sense organ system" EXACT [FMA:78499] | ||
| Comments: | note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system),UBERON:0001434 (skeletal system),UBERON:0002204 (musculoskeletal system),UBERON:0002294 (biliary system),UBERON:0002330 (exocrine system),UBERON:0002390 (hematopoietic system),UBERON:0002405 (immune system),UBERON:0002416 (integumental system),UBERON:0002423 (hepatobiliary system) |
|---|---|
| part of: | UBERON:0001032 (sensory system) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10059-101H5 (tongue, fetal, donor1)
- 10203-103F5 (tongue, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10275-104E5
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10059-101H5 (tongue, fetal, donor1)
- 10203-103F5 (tongue, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10275-104E5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004456 (entire sense organ system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.42e-69 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_f77e93c1f737eb679db1865f1093e5a4 | p10@SIX3 |
| 4.42e-69 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_f77e93c1f737eb679db1865f1093e5a4 | p10@SIX3 |
| 5.33e-65 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:77532283..77532316, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_4a6d79270fb9721e0d9020fec2f2648a | p1@Mir184 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_4a6d79270fb9721e0d9020fec2f2648a | p1@E130218I03Rik |
| 5.33e-65 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31815126..31815139, - |
| 5.33e-65 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31818263..31818276, + |
| 5.33e-65 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr16:21743134..21743139, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr16:21743134..21743139, - |
| 5.33e-65 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_4a6d79270fb9721e0d9020fec2f2648a | p5@Zfp365 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_4a6d79270fb9721e0d9020fec2f2648a | p1@Mir184 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_4a6d79270fb9721e0d9020fec2f2648a | p8@Osbp2 |
| 5.33e-65 | FFCP PHASE1:Mm9::chr11:5876195..5876219,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:5876195..5876219, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr3:129525389..129525400, - |
| 5.33e-65 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr3:129525389..129525400, - |
| 5.33e-65 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31815126..31815139, - |
| 5.33e-65 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_4a6d79270fb9721e0d9020fec2f2648a | p4@Dct |
| 5.33e-65 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31817987..31818013, + |
| 5.33e-65 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_4a6d79270fb9721e0d9020fec2f2648a | p1@E130218I03Rik |
| 5.33e-65 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31818106..31818119, + |
| 5.33e-65 | FFCP PHASE2:Mm9::chr11:5876195..5876219,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:5876195..5876219, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31818263..31818276, + |
| 5.33e-65 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:77532391..77532408, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:77532391..77532408, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_4a6d79270fb9721e0d9020fec2f2648a | p4@Dct |
| 5.33e-65 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr10:127668442..127668453, + |
| 5.33e-65 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_4a6d79270fb9721e0d9020fec2f2648a | p6@Celf1 |
| 5.33e-65 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_4a6d79270fb9721e0d9020fec2f2648a | p8@Osbp2 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_4a6d79270fb9721e0d9020fec2f2648a | p3@Osbp2 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31817987..31818013, + |
| 5.33e-65 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr10:127668442..127668453, + |
| 5.33e-65 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_4a6d79270fb9721e0d9020fec2f2648a | p@chr17:31818106..31818119, + |
| 5.33e-65 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_4a6d79270fb9721e0d9020fec2f2648a | p6@Celf1 |
| 5.33e-65 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_4a6d79270fb9721e0d9020fec2f2648a | p@chr11:77532283..77532316, - |
| 5.33e-65 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_4a6d79270fb9721e0d9020fec2f2648a | p5@Zfp365 |
| 5.33e-65 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_4a6d79270fb9721e0d9020fec2f2648a | p3@Osbp2 |
| 7.33e-60 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_32a08a8404e204953dd1ed1c5f27a2b5 | p1@ENST00000456467 |
| 7.33e-60 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_32a08a8404e204953dd1ed1c5f27a2b5 | p1@ENST00000456467 |
| 9.27e-59 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_9942c7437846dc686331e6c5b58accce | p3@LOC100504989, p3@Timeless |
| 9.27e-59 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_9942c7437846dc686331e6c5b58accce | p3@LOC100504989, p3@Timeless |
| 9.27e-59 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_9942c7437846dc686331e6c5b58accce | p@chr7:64675015..64675028, + |
| 9.27e-59 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_9942c7437846dc686331e6c5b58accce | p@chr7:64675015..64675028, + |
| 1.08e-58 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_646bafa908446940807850b4ccfd64ca | p@chr6:97891135..97891147, + |
| 1.08e-58 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_646bafa908446940807850b4ccfd64ca | p6@Pax6 |
| 1.08e-58 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_646bafa908446940807850b4ccfd64ca | p6@Pax6 |
| 1.08e-58 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_646bafa908446940807850b4ccfd64ca | p@chr6:97891135..97891147, + |
| 1.26e-58 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_80a2f04281148a8d9fa2701e3ecade4a | p1@4933429O19Rik |
| 1.26e-58 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_80a2f04281148a8d9fa2701e3ecade4a | p1@4933429O19Rik |
| 3.92e-58 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_964299f0cf31996cf5595cd9ed70161d | p1@ENST00000448923 |
| 3.92e-58 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_964299f0cf31996cf5595cd9ed70161d | p1@ENST00000448923 |
| 5.97e-58 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_b68705cf2faee7ea9bfb455e213656de | p11@SIX3 |
| 5.97e-58 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_b68705cf2faee7ea9bfb455e213656de | p11@SIX3 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr8:77582172..77582183, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112690744..112690755, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr1:38092602..38092616, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr17:31816584..31816600, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_bc63476fbd632aeca89d45f5cf3890c8 | p3@Rrh |
| 7.26e-58 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_bc63476fbd632aeca89d45f5cf3890c8 | p2@Hsd17b12 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_bc63476fbd632aeca89d45f5cf3890c8 | p2@Cryga |
| 7.26e-58 | FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr15:36655026..36655032, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr10:127668480..127668491, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_bc63476fbd632aeca89d45f5cf3890c8 | p3@Rrh |
| 7.26e-58 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr6:115162924..115162933, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr17:31816514..31816526, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr6:115162924..115162933, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr7:28282354..28282365, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_bc63476fbd632aeca89d45f5cf3890c8 | p3@Gngt2 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr17:31818215..31818239, - |
| 7.26e-58 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr7:28282354..28282365, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Opn4 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_bc63476fbd632aeca89d45f5cf3890c8 | p11@Rnf123 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Gm4792 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:113506006..113506025, - |
| 7.26e-58 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112688342..112688357, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr14:49501519..49501530, - |
| 7.26e-58 | FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr1:65147224..65147236, - |
| 7.26e-58 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr17:31816584..31816600, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@ENSMUST00000173365 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr8:77582172..77582183, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Impg2 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Cngb3 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112692580..112692595, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr8:77582194..77582219, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr17:31817947..31817965, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr6:85969237..85969247, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112698505..112698537, - |
| 7.26e-58 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_bc63476fbd632aeca89d45f5cf3890c8 | p2@Cryga |
| 7.26e-58 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112688342..112688357, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112686483..112686494, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr6:3944001..3944016,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Gngt1 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr1:65147201..65147212, - |
| 7.26e-58 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr6:85969237..85969247, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Cngb3 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@ENSMUST00000173365 |
| 7.26e-58 | FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:112690963..112690994, + |
| 7.26e-58 | FFCP PHASE2:Mm9::chr6:3944001..3944016,+#_bc63476fbd632aeca89d45f5cf3890c8 | p1@Gngt1 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr5:113507470..113507483, - |
| 7.26e-58 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_bc63476fbd632aeca89d45f5cf3890c8 | p@chr1:38092538..38092550, + |
| 7.26e-58 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_bc63476fbd632aeca89d45f5cf3890c8 | p3@Gngt2 |
| 7.26e-58 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_bc63476fbd632aeca89d45f5cf3890c8 | p4@LOC100504989, p4@Timeless |
