UBERON:0005876: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=genital tubercle | |name=undifferentiated genital tubercle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0009196 | |part_of=UBERON:0009196 | ||
Latest revision as of 17:55, 12 September 2014
| Name: | undifferentiated genital tubercle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle] | ||
| Xrefs: |
| ||
| Synonyms: | "tuberculum phallicum; tuberculum genitale" RELATED LATIN [Wikipedia:Genital_tubercle] | ||
| Comments: | Taxon notes: todo - add taxon constraints |
Gray1119.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004874(somatopleure) |
| part_of: | UBERON:0009196(indifferent external genitalia) |
Children
| develops from: | UBERON:0000989 (penis) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005876 (undifferentiated genital tubercle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:53068889..53068898,-#_5e7db072831b5150ffb0710557ecfa49 | p@chr12:53068889..53068898, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:53068923..53068932,-#_5e7db072831b5150ffb0710557ecfa49 | p@chr12:53068923..53068932, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:53068889..53068898,-#_5e7db072831b5150ffb0710557ecfa49 | p@chr12:53068889..53068898, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:53068923..53068932,-#_5e7db072831b5150ffb0710557ecfa49 | p@chr12:53068923..53068932, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:38975820..38975830,-#_1438dee19778d515afcb329931874abb | p10@KRT10 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:15811123..15811133,+#_1438dee19778d515afcb329931874abb | p@chr16:15811123..15811133, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr17:38976407..38976413,-#_1438dee19778d515afcb329931874abb | p20@KRT10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:110964453..110964459,-#_1438dee19778d515afcb329931874abb | p16@CDK19 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:59672718..59672753,-#_1438dee19778d515afcb329931874abb | p@chr5:59672718..59672753, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr17:38975820..38975830,-#_1438dee19778d515afcb329931874abb | p10@KRT10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr15:45803320..45803343,+#_1438dee19778d515afcb329931874abb | p1@HMGN2P46 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:72252453..72252458,-#_1438dee19778d515afcb329931874abb | p@chr8:72252453..72252458, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:15811123..15811133,+#_1438dee19778d515afcb329931874abb | p@chr16:15811123..15811133, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:110964453..110964459,-#_1438dee19778d515afcb329931874abb | p16@CDK19 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:79379348..79379360,+#_1438dee19778d515afcb329931874abb | p1@PCA3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:59672718..59672753,-#_1438dee19778d515afcb329931874abb | p@chr5:59672718..59672753, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:38976407..38976413,-#_1438dee19778d515afcb329931874abb | p20@KRT10 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:72252453..72252458,-#_1438dee19778d515afcb329931874abb | p@chr8:72252453..72252458, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr15:45803320..45803343,+#_1438dee19778d515afcb329931874abb | p1@HMGN2P46 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:79379348..79379360,+#_1438dee19778d515afcb329931874abb | p1@PCA3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr14:74454889..74454892,-#_1b14772be9e034606441087efa061c41 | p10@ENTPD5 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:53068552..53068579,-#_1b14772be9e034606441087efa061c41 | p@chr12:53068552..53068579, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr14:74454889..74454892,-#_1b14772be9e034606441087efa061c41 | p10@ENTPD5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:53068552..53068579,-#_1b14772be9e034606441087efa061c41 | p@chr12:53068552..53068579, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38975796..38975805,-#_2f0a70bf8ef0c61d532e03445871595c | p13@KRT10 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:152585338..152585342,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr6:152585338..152585342, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:179393635..179393640,-#_2f0a70bf8ef0c61d532e03445871595c | p167@TTN |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:186434325..186434339,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr4:186434325..186434339, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38976909..38976919,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:38976909..38976919, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38975850..38975854,-#_2f0a70bf8ef0c61d532e03445871595c | p19@KRT10 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:152585338..152585342,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr6:152585338..152585342, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:61416169..61416181,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr1:61416169..61416181, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38978526..38978535,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:38978526..38978535, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:51517928..51517936,-#_2f0a70bf8ef0c61d532e03445871595c | p2@AK026045 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38975850..38975854,-#_2f0a70bf8ef0c61d532e03445871595c | p19@KRT10 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:209545365..209545377,+#_2f0a70bf8ef0c61d532e03445871595c | p1@ENST00000447257 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:38978526..38978535,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:38978526..38978535, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:33640639..33640650,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:33640639..33640650, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:61416169..61416181,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr1:61416169..61416181, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:51517928..51517936,-#_2f0a70bf8ef0c61d532e03445871595c | p2@AK026045 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:38664309..38664322,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr19:38664309..38664322, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:186434325..186434339,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr4:186434325..186434339, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:33640639..33640650,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:33640639..33640650, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:179399981..179399988,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr2:179399981..179399988, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38975796..38975805,-#_2f0a70bf8ef0c61d532e03445871595c | p13@KRT10 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:209545365..209545377,+#_2f0a70bf8ef0c61d532e03445871595c | p1@ENST00000447257 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:179393635..179393640,-#_2f0a70bf8ef0c61d532e03445871595c | p167@TTN |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:38664309..38664322,+#_2f0a70bf8ef0c61d532e03445871595c | p@chr19:38664309..38664322, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:179399981..179399988,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr2:179399981..179399988, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:38976909..38976919,-#_2f0a70bf8ef0c61d532e03445871595c | p@chr17:38976909..38976919, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_83ff3f07055979f07c17f4d1de996ac6 | p@chr13:103555720..103555725, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152520333..152520340,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152520333..152520340, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152548420..152548425,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152548420..152548425, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:75869014..75869047,+#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:75869014..75869047, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:52875783..52875812,-#_83ff3f07055979f07c17f4d1de996ac6 | p7@TMEM110 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:179542558..179542568,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:179542558..179542568, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_83ff3f07055979f07c17f4d1de996ac6 | p@chr13:103555720..103555725, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:94301107..94301111,-#_83ff3f07055979f07c17f4d1de996ac6 | p18@IDE |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:34571309..34571314,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr16:34571309..34571314, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:66771311..66771320,-#_83ff3f07055979f07c17f4d1de996ac6 | p2@ENST00000508512 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:94301107..94301111,-#_83ff3f07055979f07c17f4d1de996ac6 | p18@IDE |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:179542558..179542568,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:179542558..179542568, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152520302..152520308,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152520302..152520308, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:34571309..34571314,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr16:34571309..34571314, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:66771311..66771320,-#_83ff3f07055979f07c17f4d1de996ac6 | p2@ENST00000508512 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:152520302..152520308,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152520302..152520308, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152520333..152520340,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152520333..152520340, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:152548420..152548425,-#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:152548420..152548425, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:75869014..75869047,+#_83ff3f07055979f07c17f4d1de996ac6 | p@chr2:75869014..75869047, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:52875783..52875812,-#_83ff3f07055979f07c17f4d1de996ac6 | p7@TMEM110 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:178753478..178753487,-#_a2e04505860d65be0c16040e12e87e4e | p10@PDE11A |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:4448859..4448864,-#_a2e04505860d65be0c16040e12e87e4e | p@chr17:4448859..4448864, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:178753478..178753487,-#_a2e04505860d65be0c16040e12e87e4e | p10@PDE11A |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:4448859..4448864,-#_a2e04505860d65be0c16040e12e87e4e | p@chr17:4448859..4448864, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr20:33451327..33451358,-#_4c39809d372b12014dff8d4f2f025fba | p4@GGT7 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr17:10421962..10421969,-#_4c39809d372b12014dff8d4f2f025fba | p2@MYH1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:15646574..15646578,-#_4c39809d372b12014dff8d4f2f025fba | p11@ITGA8 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:15646574..15646578,-#_4c39809d372b12014dff8d4f2f025fba | p11@ITGA8 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:170783857..170783860,+#_4c39809d372b12014dff8d4f2f025fba | p@chr2:170783857..170783860, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr16:56598984..56598990,+#_4c39809d372b12014dff8d4f2f025fba | p1@MT4 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr20:33451327..33451358,-#_4c39809d372b12014dff8d4f2f025fba | p4@GGT7 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:152554090..152554096,-#_4c39809d372b12014dff8d4f2f025fba | p@chr2:152554090..152554096, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:71351909..71351911,+#_4c39809d372b12014dff8d4f2f025fba | p@chr10:71351909..71351911, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:152554090..152554096,-#_4c39809d372b12014dff8d4f2f025fba | p@chr2:152554090..152554096, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:71351909..71351911,+#_4c39809d372b12014dff8d4f2f025fba | p@chr10:71351909..71351911, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr16:56598984..56598990,+#_4c39809d372b12014dff8d4f2f025fba | p1@MT4 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr17:10421962..10421969,-#_4c39809d372b12014dff8d4f2f025fba | p2@MYH1 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:170783857..170783860,+#_4c39809d372b12014dff8d4f2f025fba | p@chr2:170783857..170783860, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr16:15865517..15865522,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr16:15865517..15865522, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:38484957..38484965,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr5:38484957..38484965, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:66771414..66771419,-#_93bee6b1718b7b6363a1a1c80287be41 | p2@ENST00000515184 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:179454661..179454668,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:179454661..179454668, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:152393727..152393736,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:152393727..152393736, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:2744431..2744440,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr6:2744431..2744440, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:10856739..10856746,-#_93bee6b1718b7b6363a1a1c80287be41 | p36@CSDA |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:152534162..152534168,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:152534162..152534168, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:38484957..38484965,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr5:38484957..38484965, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:152409955..152409964,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:152409955..152409964, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:179454661..179454668,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:179454661..179454668, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:152348920..152348927,-#_93bee6b1718b7b6363a1a1c80287be41 | p@chr2:152348920..152348927, - |
