FF:10631-108I1: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005068 | |DRA_sample_Accession=CAGE@SAMD00005068 | ||
|accession_numbers=CAGE;DRX007867;DRR008739;DRZ000164;DRZ001549 | |accession_numbers=CAGE;DRX007867;DRR008739;DRZ000164;DRZ001549;DRZ011514;DRZ012899 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236,CL:0000785,CL:0000819 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236,CL:0000785,CL:0000819 | ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/diffuse%2520large%2520B-cell%2520lymphoma%2520cell%2520line%253aCTB-1.CNhs11741.10631-108I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/diffuse%2520large%2520B-cell%2520lymphoma%2520cell%2520line%253aCTB-1.CNhs11741.10631-108I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/diffuse%2520large%2520B-cell%2520lymphoma%2520cell%2520line%253aCTB-1.CNhs11741.10631-108I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/diffuse%2520large%2520B-cell%2520lymphoma%2520cell%2520line%253aCTB-1.CNhs11741.10631-108I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/diffuse%2520large%2520B-cell%2520lymphoma%2520cell%2520line%253aCTB-1.CNhs11741.10631-108I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10631-108I1 | |id=FF:10631-108I1 | ||
|is_a=CL:0000819;;EFO:0002091;;FF:0000210;;FF:0102521 | |is_a=CL:0000819;;EFO:0002091;;FF:0000210;;FF:0102521 | ||
Line 46: | Line 51: | ||
|library_id=CNhs11741 | |library_id=CNhs11741 | ||
|library_id_phase_based=2:CNhs11741 | |library_id_phase_based=2:CNhs11741 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10631 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10631 | |||
|name=diffuse large B-cell lymphoma cell line:CTB-1 | |name=diffuse large B-cell lymphoma cell line:CTB-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 53: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.572502392332937,0,0,0,0,0,0.0776826723014192,0.189592591802658,-0.191206066078108,0.623098618885277,0,0,0,0.135103881494694,0,0,0,0,0,0,0.07278454461533,0.189592591802658,0,-0.018219128853734,0,0,0,0,0.811148791204699,0.661243266976917,0,0,0.417805684318623,0,0,0,0,0,0,0,0,0,0,0,0,-0.0728850457267141,0.421948117359166,0,0,0,0,0,0,0,0.0947853300810685,0,0,0,0,0,-0.0548856501811437,0,0.381141454122524,0,0,0.140657075174708,0,0,0,0,0,0,0,0,0,0,0.189592591802658,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,-0.430190732155975,0,0,0,0.0775187576214007,-0.107253189640857,0.160563895180354,0,0,0,-0.0980353512377064,0.630930753457939,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0,0.557804097277695,0.238000702387805,0,0,-0.0562622698659916,-0.12141020312084,0,0,0.321127790360708,0,0,0 | |repeat_enrich_byfamily=0,0.572502392332937,0,0,0,0,0,0.0776826723014192,0.189592591802658,-0.191206066078108,0.623098618885277,0,0,0,0.135103881494694,0,0,0,0,0,0,0.07278454461533,0.189592591802658,0,-0.018219128853734,0,0,0,0,0.811148791204699,0.661243266976917,0,0,0.417805684318623,0,0,0,0,0,0,0,0,0,0,0,0,-0.0728850457267141,0.421948117359166,0,0,0,0,0,0,0,0.0947853300810685,0,0,0,0,0,-0.0548856501811437,0,0.381141454122524,0,0,0.140657075174708,0,0,0,0,0,0,0,0,0,0,0.189592591802658,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,-0.430190732155975,0,0,0,0.0775187576214007,-0.107253189640857,0.160563895180354,0,0,0,-0.0980353512377064,0.630930753457939,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0,0.557804097277695,0.238000702387805,0,0,-0.0562622698659916,-0.12141020312084,0,0,0.321127790360708,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0.238000702387805,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.1529584283913,-0.00841126102877823,0.067551940747347,0,-0.390886814601905,0,0,0,0,0.07278454461533,0,0,0,0,-0.0553353223372348,0,-0.0504125515893149,0.119000351193902,0,0,0,0,-0.305472230898407,0,-0.055257709955607,-0.0683442610773682,0,0.07278454461533,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0.231449765620814,-0.604215254858039,-0.055712496781182,0,0,0,-0.377346435957804,0.289976469007423,0,0,-0.121779851751874,0.350549244396836,0,0,-0.391044581551635,0,-0.30816616600961,-0.209930408449582,0,0.553577992915469,0,0,0,0,0,0.07278454461533,0,0,0.135103881494694,0,0,-0.0574934668214365,-0.0889878942911636,0.100357087914569,0,0,0,-0.569082053236693,0,0,-0.373286155956567,-0.0316312740970555,-0.0172219722197652,0.0964829649609779,0,-0.0643890246221079,-0.104823745482756,-0.284639343791822,0.0775187576214007,-0.147401849371139,-0.189981719549847,0,-0.0650382326735063,-0.154404290570064,-0.0363476295129425,-0.0923232617483543,0,-1.2314085082871,0.180373139007536,0,0,-0.0775089264793031,-0.192641394904493,0,0.0568206822670949,-0.35501083298208,-0.122444998564721,-0.551987085281808,-0.290130023414133,-0.275847080258486,-0.217023590540755,-0.0395325284566706,-0.219435750508789,0,-0.4215723249037,-0.0121220557942069,0,-0.0186654569513234,0.0126726420461561,-0.307778291742193,-0.0650638990811941,0,0.128989757342131,-0.0683442610773682,0,-0.598802600868482,0.222075097966108,0,-0.215144458558795,-0.127828287974308,0,0,0.135103881494694,0,0,0.278139516513513,0.0537137745779509,0.124542471461874,0,0.00395568361762544,-0.0151807197467671,0.142215166624065,0,0.00245479721718067,-0.146009897457394,-0.108481560558634,-0.292633804596236,0,0.0461927251009688,0.0485198998081984,-0.0922061517236729,-0.287290923897044,0.17955387557598,-0.137266016167614,-0.0242941219389873,0.0489205027636439,-0.788939864790226,0.0078847819874046,-0.0153422878599578,-0.0983289857321517,-0.461596633159214,-0.679498131621524,-0.072543961144669,0.012982043484388,0,-0.259965479247979,0,0.121700436992975,0,0.117432691307975,-0.350841159670582,0.429115084938957,0.144132277035107,0,-0.272087285759119,-0.715346393158644,0,-0.24468889631142,-0.0239875154535779,0,-0.0775825387193094,-0.697695966512583,0.679194255380457,-0.10259718437153,0,-0.717295613774327,0,0,-0.266702113091864,0.509705730991923,0,0.276211728005238,0.447699003160335,0.295236850454956,0.0191328080597596,0.07278454461533,0,-0.572915793377395,0.00946232969294125,0,-0.5331435192027,-0.103706020372186,-0.430190732155975,0.16862177587241,0,-0.108622809454255,0,0,0.0604729364226297,0,-0.141918030130192,0,0,0.10021110046289,0,0,0.067551940747347,0,0,0,0,0,0,0,0,0,0.0268875149972012,0.217669062116489,0,0.00040418749597193,0,0,0,0,0,-0.0188101100639378,0,0,-0.587032779705059,-0.101470786394574,0.234380617340999,0,0.036392272307665,0.036392272307665,0,-0.215723402553475,-0.130452017479394,0.135103881494694,0.0577298853050266,0,0,0,0,0.103451602013447,0,0,0.036392272307665,0,0.131862134748994,-0.0471902731726335,0,0,0,1.07226891511322,0,0,0,0,-0.0241107677823671,0.321127790360708,0,-0.0811678992888949,0,-0.13909161549513,-0.00879733493151152,0,0.196745575831039,-0.200113877936373,-1.02807023265195,0,0,-0.261347131789888,0,0.0192554720120275,0.18654094638381,0.0234715304036992,0.189592591802658,-0.0209247759461169,0,0,0,0,0.07278454461533,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.595980522891967,0.0428798248361832,0,0,0,0,0,0,0,0.0798381899761087,0.203269500334213,0,0,0,0,0,0,0,0,0.533872119451376,0,0,0,0,0,0.381141454122524,0,0,0,0,0.964647129774044,0,0,-0.204577587578184,0,0.00949926212818775,0,0,0,0,0,0.036392272307665,0,0.572502392332937,0,0,0,0.298629031323718,-0.191206066078108,0,0.135103881494694,0,0,0,0.189592591802658,0,-0.0368325958182852,0,0.28155010799651,0,0,-0.0410998290936473,0,0,0,-0.104796384789156,0,0.0776826723014192,0,0.07278454461533,0,0,0,0,0.324990523794274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0829064767520875,-0.0247755787802223,-0.28720751597291,-0.0632207254555128,0,0,-0.232628352633041,0,0,0,0,0,0,0.0876599271653755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0.0326938969422585,0,0,0,0,0,0,0,0.661243266976917,0,0.262987565457212,0.0685310853798278,0,0.0219605005535966,0,0,0,0,-0.0489099329741448,-0.246828127515482,-0.0674371610684235,0,0,0,-0.054385572482455,0,0,-0.0329050193664387,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.018219128853734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39087124941973,0.103944213055012,0,0,0,0,0,0,0.00238090903224842,0.07278454461533,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.067551940747347,0,0,0,0,0,0.705932753234657,0,0,0,-0.140301685041714,0,0,0,0,0,0,0.28155010799651,0,0.421948117359166,0,0,0,0,0.140775053998255,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450948942897104,0,0,0,-0.0480308339329755,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342649174180676,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.321127790360708,0,0,0,0,0.676702849071776,0,0,0,0,0.524865281672018,0,0,0,0,0,0,0,-0.0198765570545064,0.928428953547604,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0.635737446430699,0,0,-0.121072311234935,0,0,0.0611710734761309,0,0,0.0160926057899794,0,0,0,0,0,0,-0.0613201791501264,0,0.07278454461533,0,0,0,0,0,0,0,0,0.189570660162137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0.189592591802658,0,0,0,0,0,0,0,-0.0768866986172952,-0.12141020312084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0,0,0,0.225474471448552,0.07278454461533,0.050850319494951,0,0,0.28155010799651,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0.07278454461533,0.135103881494694,0,0.111078131625579,0,0.382938483876828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.239066907682565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0.811148791204699,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0.07278454461533,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0.135103881494694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,1.11560819455539,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0.119000351193902,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189592591802658,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.0668965948056574,0,0,0,0.036392272307665,0.036392272307665,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0.095260567676341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063079709852946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450948942897104,0,0,0,0.140775053998255,0,0,0,0.342206118694188,0,0,0,0,0.189592591802658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140657075174708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0.417805684318623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0448583133797427,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.0563880823119887,0,0,0.0544744060728015,0,0,0,0,0,0,0,0,0,0,0.402535772635523,0,0,-0.0422874684771159,0,-0.0382109906862259,-0.150306889650249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0.041360514084815,0,0,0,0,0,0,0.28155010799651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387296398627426,0,0.446445514442493,0.753274730279087,0,0.07278454461533,0.163742347518173,0.135103881494694,0.340971743682725,0.473797462187469,0.213796647095231,0,0.246955222268867,0.544797056529655,0.135103881494694,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0,0.07278454461533,0.07278454461533,0.264268844198109,-0.134371754099876,0,0.977421418184641,0,0,0.571951818743645,0,0.119000351193902,0,0.325988709985579 | |repeat_enrich_byname=0,0,0,0.238000702387805,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.1529584283913,-0.00841126102877823,0.067551940747347,0,-0.390886814601905,0,0,0,0,0.07278454461533,0,0,0,0,-0.0553353223372348,0,-0.0504125515893149,0.119000351193902,0,0,0,0,-0.305472230898407,0,-0.055257709955607,-0.0683442610773682,0,0.07278454461533,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,0.231449765620814,-0.604215254858039,-0.055712496781182,0,0,0,-0.377346435957804,0.289976469007423,0,0,-0.121779851751874,0.350549244396836,0,0,-0.391044581551635,0,-0.30816616600961,-0.209930408449582,0,0.553577992915469,0,0,0,0,0,0.07278454461533,0,0,0.135103881494694,0,0,-0.0574934668214365,-0.0889878942911636,0.100357087914569,0,0,0,-0.569082053236693,0,0,-0.373286155956567,-0.0316312740970555,-0.0172219722197652,0.0964829649609779,0,-0.0643890246221079,-0.104823745482756,-0.284639343791822,0.0775187576214007,-0.147401849371139,-0.189981719549847,0,-0.0650382326735063,-0.154404290570064,-0.0363476295129425,-0.0923232617483543,0,-1.2314085082871,0.180373139007536,0,0,-0.0775089264793031,-0.192641394904493,0,0.0568206822670949,-0.35501083298208,-0.122444998564721,-0.551987085281808,-0.290130023414133,-0.275847080258486,-0.217023590540755,-0.0395325284566706,-0.219435750508789,0,-0.4215723249037,-0.0121220557942069,0,-0.0186654569513234,0.0126726420461561,-0.307778291742193,-0.0650638990811941,0,0.128989757342131,-0.0683442610773682,0,-0.598802600868482,0.222075097966108,0,-0.215144458558795,-0.127828287974308,0,0,0.135103881494694,0,0,0.278139516513513,0.0537137745779509,0.124542471461874,0,0.00395568361762544,-0.0151807197467671,0.142215166624065,0,0.00245479721718067,-0.146009897457394,-0.108481560558634,-0.292633804596236,0,0.0461927251009688,0.0485198998081984,-0.0922061517236729,-0.287290923897044,0.17955387557598,-0.137266016167614,-0.0242941219389873,0.0489205027636439,-0.788939864790226,0.0078847819874046,-0.0153422878599578,-0.0983289857321517,-0.461596633159214,-0.679498131621524,-0.072543961144669,0.012982043484388,0,-0.259965479247979,0,0.121700436992975,0,0.117432691307975,-0.350841159670582,0.429115084938957,0.144132277035107,0,-0.272087285759119,-0.715346393158644,0,-0.24468889631142,-0.0239875154535779,0,-0.0775825387193094,-0.697695966512583,0.679194255380457,-0.10259718437153,0,-0.717295613774327,0,0,-0.266702113091864,0.509705730991923,0,0.276211728005238,0.447699003160335,0.295236850454956,0.0191328080597596,0.07278454461533,0,-0.572915793377395,0.00946232969294125,0,-0.5331435192027,-0.103706020372186,-0.430190732155975,0.16862177587241,0,-0.108622809454255,0,0,0.0604729364226297,0,-0.141918030130192,0,0,0.10021110046289,0,0,0.067551940747347,0,0,0,0,0,0,0,0,0,0.0268875149972012,0.217669062116489,0,0.00040418749597193,0,0,0,0,0,-0.0188101100639378,0,0,-0.587032779705059,-0.101470786394574,0.234380617340999,0,0.036392272307665,0.036392272307665,0,-0.215723402553475,-0.130452017479394,0.135103881494694,0.0577298853050266,0,0,0,0,0.103451602013447,0,0,0.036392272307665,0,0.131862134748994,-0.0471902731726335,0,0,0,1.07226891511322,0,0,0,0,-0.0241107677823671,0.321127790360708,0,-0.0811678992888949,0,-0.13909161549513,-0.00879733493151152,0,0.196745575831039,-0.200113877936373,-1.02807023265195,0,0,-0.261347131789888,0,0.0192554720120275,0.18654094638381,0.0234715304036992,0.189592591802658,-0.0209247759461169,0,0,0,0,0.07278454461533,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.595980522891967,0.0428798248361832,0,0,0,0,0,0,0,0.0798381899761087,0.203269500334213,0,0,0,0,0,0,0,0,0.533872119451376,0,0,0,0,0,0.381141454122524,0,0,0,0,0.964647129774044,0,0,-0.204577587578184,0,0.00949926212818775,0,0,0,0,0,0.036392272307665,0,0.572502392332937,0,0,0,0.298629031323718,-0.191206066078108,0,0.135103881494694,0,0,0,0.189592591802658,0,-0.0368325958182852,0,0.28155010799651,0,0,-0.0410998290936473,0,0,0,-0.104796384789156,0,0.0776826723014192,0,0.07278454461533,0,0,0,0,0.324990523794274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0829064767520875,-0.0247755787802223,-0.28720751597291,-0.0632207254555128,0,0,-0.232628352633041,0,0,0,0,0,0,0.0876599271653755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0.0326938969422585,0,0,0,0,0,0,0,0.661243266976917,0,0.262987565457212,0.0685310853798278,0,0.0219605005535966,0,0,0,0,-0.0489099329741448,-0.246828127515482,-0.0674371610684235,0,0,0,-0.054385572482455,0,0,-0.0329050193664387,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.018219128853734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39087124941973,0.103944213055012,0,0,0,0,0,0,0.00238090903224842,0.07278454461533,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.067551940747347,0,0,0,0,0,0.705932753234657,0,0,0,-0.140301685041714,0,0,0,0,0,0,0.28155010799651,0,0.421948117359166,0,0,0,0,0.140775053998255,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450948942897104,0,0,0,-0.0480308339329755,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342649174180676,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.321127790360708,0,0,0,0,0.676702849071776,0,0,0,0,0.524865281672018,0,0,0,0,0,0,0,-0.0198765570545064,0.928428953547604,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0.635737446430699,0,0,-0.121072311234935,0,0,0.0611710734761309,0,0,0.0160926057899794,0,0,0,0,0,0,-0.0613201791501264,0,0.07278454461533,0,0,0,0,0,0,0,0,0.189570660162137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0.189592591802658,0,0,0,0,0,0,0,-0.0768866986172952,-0.12141020312084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0,0,0,0.225474471448552,0.07278454461533,0.050850319494951,0,0,0.28155010799651,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0.07278454461533,0.135103881494694,0,0.111078131625579,0,0.382938483876828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.239066907682565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0.811148791204699,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0.07278454461533,0,0,0,0.238000702387805,0,0,0,0,0,0,0,0,0,0.135103881494694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,1.11560819455539,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0.119000351193902,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189592591802658,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.0668965948056574,0,0,0,0.036392272307665,0.036392272307665,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0.036392272307665,0,0,0,0.07278454461533,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0,0.095260567676341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063079709852946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450948942897104,0,0,0,0.140775053998255,0,0,0,0.342206118694188,0,0,0,0,0.189592591802658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140657075174708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07278454461533,0,0,0,0,0,0.417805684318623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0448583133797427,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0.0563880823119887,0,0,0.0544744060728015,0,0,0,0,0,0,0,0,0,0,0.402535772635523,0,0,-0.0422874684771159,0,-0.0382109906862259,-0.150306889650249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238000702387805,0,0,0,0.041360514084815,0,0,0,0,0,0,0.28155010799651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387296398627426,0,0.446445514442493,0.753274730279087,0,0.07278454461533,0.163742347518173,0.135103881494694,0.340971743682725,0.473797462187469,0.213796647095231,0,0.246955222268867,0.544797056529655,0.135103881494694,0,0,0,0,0,0.036392272307665,0,0,0,0,0,0,0,0,0,0.07278454461533,0.07278454461533,0.264268844198109,-0.134371754099876,0,0.977421418184641,0,0,0.571951818743645,0,0.119000351193902,0,0.325988709985579 | ||
Line 90: | Line 100: | ||
|top_motifs=AIRE:2.82906087073;MYB:2.44787290899;ZBTB16:2.2744355247;POU2F1..3:2.17741458301;E2F1..5:2.06889511928;POU5F1:1.96700351618;TOPORS:1.93161633278;PBX1:1.88130074602;CDX1,2,4:1.88042335445;IKZF2:1.8085511082;YY1:1.78609320866;PITX1..3:1.73479183767;PAX6:1.71276715432;BREu{core}:1.66956563641;NKX6-1,2:1.65028200021;OCT4_SOX2{dimer}:1.51526190236;PAX4:1.41587005716;PDX1:1.39929976709;VSX1,2:1.30214385583;FOXM1:1.29081862345;EVI1:1.28862003159;NFY{A,B,C}:1.23714468058;TEF:1.21264998748;FOX{I1,J2}:1.13825749264;HOX{A6,A7,B6,B7}:1.09191048589;FOXP1:1.04567715111;ZNF143:1.03742309564;FOXA2:1.02676438766;NRF1:0.98492103423;FOX{F1,F2,J1}:0.902057718466;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.892001272998;DMAP1_NCOR{1,2}_SMARC:0.873259050428;ZNF384:0.80785184824;NANOG{mouse}:0.802084687249;POU3F1..4:0.796055701876;ELK1,4_GABP{A,B1}:0.777800639765;T:0.775135201781;ELF1,2,4:0.75780532834;CUX2:0.757447733761;FOXD3:0.723528823264;BPTF:0.714892234821;GFI1:0.630807578423;NKX3-1:0.609563304928;ARID5B:0.600817849672;PAX3,7:0.599862792039;LMO2:0.591407567269;CDC5L:0.564714851451;POU1F1:0.552191351461;FOXP3:0.531446807835;bHLH_family:0.528947267302;UFEwm:0.487510582413;NR5A1,2:0.443786490514;GATA6:0.42519519515;SOX{8,9,10}:0.331606642842;CREB1:0.326776265796;ZEB1:0.322213596403;NKX2-1,4:0.313628710415;AR:0.311763387339;FOXO1,3,4:0.295648189829;HNF4A_NR2F1,2:0.291950722219;RFX2..5_RFXANK_RFXAP:0.287482143622;SPI1:0.278122100754;NKX2-2,8:0.266168017411;SNAI1..3:0.26002204066;GATA4:0.257344002196;TFDP1:0.223298476077;ALX1:0.221615572986;NFKB1_REL_RELA:0.221272512726;SPIB:0.210545837323;MYOD1:0.205617337429;RUNX1..3:0.204305554187;FOXQ1:0.191396772665;ALX4:0.176412935804;IRF1,2:0.118461199364;STAT5{A,B}:0.111459817706;AHR_ARNT_ARNT2:0.0997508491352;ONECUT1,2:0.0899430071555;TGIF1:0.0677672805552;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671582758006;SOX17:0.0258868100623;HOX{A5,B5}:-0.0384983027279;TLX2:-0.0478589873579;SOX5:-0.0632585988754;ATF5_CREB3:-0.079096973527;KLF4:-0.097319544631;RBPJ:-0.109277567865;FOXL1:-0.150227901365;CRX:-0.161113143673;NKX3-2:-0.165900998729;HOXA9_MEIS1:-0.199088671352;ETS1,2:-0.20092457974;HOX{A4,D4}:-0.219516212613;HSF1,2:-0.226329997089;SPZ1:-0.291526665474;GCM1,2:-0.302176739887;ZFP161:-0.338781220907;PRRX1,2:-0.346052015363;MEF2{A,B,C,D}:-0.360242748049;HAND1,2:-0.375857578953;ATF4:-0.376931309579;HMGA1,2:-0.384651760261;RFX1:-0.390838553901;HNF1A:-0.395123984053;LEF1_TCF7_TCF7L1,2:-0.463557263;FOXN1:-0.485474885571;DBP:-0.494403736488;NR6A1:-0.503902391737;CEBPA,B_DDIT3:-0.508849681972;NFE2L1:-0.529009377735;RXRA_VDR{dimer}:-0.535928991371;IRF7:-0.536426228388;HES1:-0.551076298904;HIF1A:-0.552640248142;EN1,2:-0.573798945066;NKX2-3_NKX2-5:-0.590176973301;LHX3,4:-0.597074979688;NFIL3:-0.606101641173;RORA:-0.608692326997;NANOG:-0.612970452639;PRDM1:-0.624880527422;MYFfamily:-0.626278295814;POU6F1:-0.640535325454;HMX1:-0.642905162755;PAX2:-0.689136872076;SOX2:-0.702035332681;PPARG:-0.711668434361;TBP:-0.712912499522;FOSL2:-0.724581731961;NR1H4:-0.759477066773;TP53:-0.767340773244;ZIC1..3:-0.771292346876;GZF1:-0.802896152768;HBP1_HMGB_SSRP1_UBTF:-0.829367077124;SREBF1,2:-0.835480942801;PAX8:-0.836265711642;FOS_FOS{B,L1}_JUN{B,D}:-0.856614496473;RREB1:-0.868483881474;ESR1:-0.876046106315;SMAD1..7,9:-0.889714081457;EP300:-0.901715551933;NFE2:-0.914317744333;MYBL2:-0.920136086705;ESRRA:-0.954561585344;GFI1B:-0.957791562421;ZNF423:-0.95944568479;BACH2:-0.98668181445;HLF:-1.00118639519;NFIX:-1.00373514062;IKZF1:-1.03687252004;NHLH1,2:-1.04632423404;FOX{D1,D2}:-1.04696542217;ATF2:-1.0544176388;PAX1,9:-1.05921187669;REST:-1.07639464501;TAL1_TCF{3,4,12}:-1.11688000075;ZNF148:-1.12240744425;HIC1:-1.13099553563;MTE{core}:-1.14245750313;NR3C1:-1.19573632856;ZNF238:-1.21638146659;JUN:-1.21647778909;ADNP_IRX_SIX_ZHX:-1.23299985056;EBF1:-1.25468668525;XBP1:-1.27368411818;GTF2A1,2:-1.28131462437;PATZ1:-1.28522645119;MED-1{core}:-1.29825521859;NFATC1..3:-1.31373696649;RXR{A,B,G}:-1.35459666465;MZF1:-1.37963428641;NFE2L2:-1.43589022955;TFAP4:-1.45198609009;MTF1:-1.47871047775;PAX5:-1.50173189019;STAT1,3:-1.53886283189;ZBTB6:-1.55488010819;TBX4,5:-1.5621116216;MAFB:-1.6006449685;MAZ:-1.60912354649;GTF2I:-1.6263152786;SRF:-1.6355669517;GLI1..3:-1.68269322293;STAT2,4,6:-1.71782404254;TEAD1:-1.72285730111;EGR1..3:-1.79990253112;TFAP2B:-1.86120903893;XCPE1{core}:-1.98332117971;TFAP2{A,C}:-2.01683976058;TLX1..3_NFIC{dimer}:-2.0599934011;ATF6:-2.10328929078;TFCP2:-2.14972568703;SP1:-2.43701936681 | |top_motifs=AIRE:2.82906087073;MYB:2.44787290899;ZBTB16:2.2744355247;POU2F1..3:2.17741458301;E2F1..5:2.06889511928;POU5F1:1.96700351618;TOPORS:1.93161633278;PBX1:1.88130074602;CDX1,2,4:1.88042335445;IKZF2:1.8085511082;YY1:1.78609320866;PITX1..3:1.73479183767;PAX6:1.71276715432;BREu{core}:1.66956563641;NKX6-1,2:1.65028200021;OCT4_SOX2{dimer}:1.51526190236;PAX4:1.41587005716;PDX1:1.39929976709;VSX1,2:1.30214385583;FOXM1:1.29081862345;EVI1:1.28862003159;NFY{A,B,C}:1.23714468058;TEF:1.21264998748;FOX{I1,J2}:1.13825749264;HOX{A6,A7,B6,B7}:1.09191048589;FOXP1:1.04567715111;ZNF143:1.03742309564;FOXA2:1.02676438766;NRF1:0.98492103423;FOX{F1,F2,J1}:0.902057718466;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.892001272998;DMAP1_NCOR{1,2}_SMARC:0.873259050428;ZNF384:0.80785184824;NANOG{mouse}:0.802084687249;POU3F1..4:0.796055701876;ELK1,4_GABP{A,B1}:0.777800639765;T:0.775135201781;ELF1,2,4:0.75780532834;CUX2:0.757447733761;FOXD3:0.723528823264;BPTF:0.714892234821;GFI1:0.630807578423;NKX3-1:0.609563304928;ARID5B:0.600817849672;PAX3,7:0.599862792039;LMO2:0.591407567269;CDC5L:0.564714851451;POU1F1:0.552191351461;FOXP3:0.531446807835;bHLH_family:0.528947267302;UFEwm:0.487510582413;NR5A1,2:0.443786490514;GATA6:0.42519519515;SOX{8,9,10}:0.331606642842;CREB1:0.326776265796;ZEB1:0.322213596403;NKX2-1,4:0.313628710415;AR:0.311763387339;FOXO1,3,4:0.295648189829;HNF4A_NR2F1,2:0.291950722219;RFX2..5_RFXANK_RFXAP:0.287482143622;SPI1:0.278122100754;NKX2-2,8:0.266168017411;SNAI1..3:0.26002204066;GATA4:0.257344002196;TFDP1:0.223298476077;ALX1:0.221615572986;NFKB1_REL_RELA:0.221272512726;SPIB:0.210545837323;MYOD1:0.205617337429;RUNX1..3:0.204305554187;FOXQ1:0.191396772665;ALX4:0.176412935804;IRF1,2:0.118461199364;STAT5{A,B}:0.111459817706;AHR_ARNT_ARNT2:0.0997508491352;ONECUT1,2:0.0899430071555;TGIF1:0.0677672805552;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671582758006;SOX17:0.0258868100623;HOX{A5,B5}:-0.0384983027279;TLX2:-0.0478589873579;SOX5:-0.0632585988754;ATF5_CREB3:-0.079096973527;KLF4:-0.097319544631;RBPJ:-0.109277567865;FOXL1:-0.150227901365;CRX:-0.161113143673;NKX3-2:-0.165900998729;HOXA9_MEIS1:-0.199088671352;ETS1,2:-0.20092457974;HOX{A4,D4}:-0.219516212613;HSF1,2:-0.226329997089;SPZ1:-0.291526665474;GCM1,2:-0.302176739887;ZFP161:-0.338781220907;PRRX1,2:-0.346052015363;MEF2{A,B,C,D}:-0.360242748049;HAND1,2:-0.375857578953;ATF4:-0.376931309579;HMGA1,2:-0.384651760261;RFX1:-0.390838553901;HNF1A:-0.395123984053;LEF1_TCF7_TCF7L1,2:-0.463557263;FOXN1:-0.485474885571;DBP:-0.494403736488;NR6A1:-0.503902391737;CEBPA,B_DDIT3:-0.508849681972;NFE2L1:-0.529009377735;RXRA_VDR{dimer}:-0.535928991371;IRF7:-0.536426228388;HES1:-0.551076298904;HIF1A:-0.552640248142;EN1,2:-0.573798945066;NKX2-3_NKX2-5:-0.590176973301;LHX3,4:-0.597074979688;NFIL3:-0.606101641173;RORA:-0.608692326997;NANOG:-0.612970452639;PRDM1:-0.624880527422;MYFfamily:-0.626278295814;POU6F1:-0.640535325454;HMX1:-0.642905162755;PAX2:-0.689136872076;SOX2:-0.702035332681;PPARG:-0.711668434361;TBP:-0.712912499522;FOSL2:-0.724581731961;NR1H4:-0.759477066773;TP53:-0.767340773244;ZIC1..3:-0.771292346876;GZF1:-0.802896152768;HBP1_HMGB_SSRP1_UBTF:-0.829367077124;SREBF1,2:-0.835480942801;PAX8:-0.836265711642;FOS_FOS{B,L1}_JUN{B,D}:-0.856614496473;RREB1:-0.868483881474;ESR1:-0.876046106315;SMAD1..7,9:-0.889714081457;EP300:-0.901715551933;NFE2:-0.914317744333;MYBL2:-0.920136086705;ESRRA:-0.954561585344;GFI1B:-0.957791562421;ZNF423:-0.95944568479;BACH2:-0.98668181445;HLF:-1.00118639519;NFIX:-1.00373514062;IKZF1:-1.03687252004;NHLH1,2:-1.04632423404;FOX{D1,D2}:-1.04696542217;ATF2:-1.0544176388;PAX1,9:-1.05921187669;REST:-1.07639464501;TAL1_TCF{3,4,12}:-1.11688000075;ZNF148:-1.12240744425;HIC1:-1.13099553563;MTE{core}:-1.14245750313;NR3C1:-1.19573632856;ZNF238:-1.21638146659;JUN:-1.21647778909;ADNP_IRX_SIX_ZHX:-1.23299985056;EBF1:-1.25468668525;XBP1:-1.27368411818;GTF2A1,2:-1.28131462437;PATZ1:-1.28522645119;MED-1{core}:-1.29825521859;NFATC1..3:-1.31373696649;RXR{A,B,G}:-1.35459666465;MZF1:-1.37963428641;NFE2L2:-1.43589022955;TFAP4:-1.45198609009;MTF1:-1.47871047775;PAX5:-1.50173189019;STAT1,3:-1.53886283189;ZBTB6:-1.55488010819;TBX4,5:-1.5621116216;MAFB:-1.6006449685;MAZ:-1.60912354649;GTF2I:-1.6263152786;SRF:-1.6355669517;GLI1..3:-1.68269322293;STAT2,4,6:-1.71782404254;TEAD1:-1.72285730111;EGR1..3:-1.79990253112;TFAP2B:-1.86120903893;XCPE1{core}:-1.98332117971;TFAP2{A,C}:-2.01683976058;TLX1..3_NFIC{dimer}:-2.0599934011;ATF6:-2.10328929078;TFCP2:-2.14972568703;SP1:-2.43701936681 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10631-108I1;search_select_hide=table117:FF:10631-108I1 | |||
}} | }} |
Latest revision as of 14:31, 3 June 2020
Name: | diffuse large B-cell lymphoma cell line:CTB-1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11741 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
---|
ExpandCAGE Accession numbers |
---|
ExpandDownload raw sequence, BAM & CTSS |
---|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11741
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11741
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11741
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000819 B-1 B cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102521 diffuse large B-cell lymphoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)
0000785 (mature B cell)
0000819 (B-1 B cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
0060073 (lymphatic system cancer)
8675 (lymphosarcoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0101518 (B-lymphoma cell line sample)
0102521 (diffuse large B-cell lymphoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000954 (small pre-B-II cell)