FFCP PHASE2:Hg19::chr19:11530012..11530023,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:57139 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:30282 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=57139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=30282 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q3MIN7,B5ME84,B7ZL22 | ||
|association_with_transcript=0bp_to_ENST00000380456,ENST00000393423,NM_001035223,NM_001161616,uc002mrm.2,uc002mrn.2,uc002mro.2,uc002mrp.2,uc002mrq.2_5end | |association_with_transcript=0bp_to_ENST00000380456,ENST00000393423,NM_001035223,NM_001161616,uc002mrm.2,uc002mrn.2,uc002mro.2,uc002mrp.2,uc002mrq.2_5end | ||
|cluster_id=chr19:11530012..11530023,- | |cluster_id=chr19:11530012..11530023,- | ||
Latest revision as of 05:16, 25 September 2015
| Short description: | p3@RGL3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_RGL3_5end |
| Coexpression cluster: | C3748_smallcell_thyroid_seminal_ductus_breast_somatostatinoma_small |
| Association with transcript: | 0bp_to_ENST00000380456, ENST00000393423, NM_001035223, NM_001161616, uc002mrm.2, uc002mrn.2, uc002mro.2, uc002mrp.2, uc002mrq.2_5end |
| EntrezGene: | RGL3 |
| HGNC: | 30282 |
| UniProt: | Q3MIN7B5ME84B7ZL22 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@RGL3 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 1.27e-13 | 114 |
| internal genitalia | 3.38e-09 | 25 |
| male genital duct | 1.03e-08 | 3 |
| internal male genitalia | 1.03e-08 | 3 |
| trunk region element | 6.85e-08 | 101 |
| valve | 1.72e-07 | 3 |
| cardiac mesenchyme | 1.72e-07 | 3 |
| cardial valve | 1.72e-07 | 3 |
| tunica intima | 1.72e-07 | 3 |
| heart layer | 1.72e-07 | 3 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 7.85e-09 | 106 |
| cell type cancer | 9.06e-07 | 143 |
Showing 1 to 2 of 2 entries
