UBERON:0000060: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000060
|name=anatomical wall
|namespace=
|def="Anatomical organ component enclosing an organ cavity." [FMA:82482]
|xref=EMAPA:25036;;FMA:82482;;galen...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0009915 | ||
|comment=merged FMA organ wall in to this class | |comment=merged FMA organ wall in to this class | ||
|created_by= | |created_by= | ||
| | |def="Anatomical organ component enclosing an organ cavity." [FMA:82482] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000060 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical wall | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="wall" EXACT [];;"wall of organ" EXACT [FMA:82482] | |||
|union_of= | |||
|xref=EMAPA:25036;;FMA:82482;;galen:Wall | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | anatomical wall | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical organ component enclosing an organ cavity." [FMA:82482] | ||
| Xrefs: |
| ||
| Synonyms: |
"wall" EXACT [] "wall of organ" EXACT [FMA:82482] | ||
| Comments: | merged FMA organ wall in to this class | ||
| Alt_id: | UBERON:0009915 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0000328 (gut wall),UBERON:0000415 (artery wall),UBERON:0000459 (uterine wall),UBERON:0001256 (wall of urinary bladder),UBERON:0001811 (conjunctiva),UBERON:0003697 (abdominal wall),UBERON:0004663 (aorta wall),UBERON:0004894 (alveolar wall) |
|---|---|
| part of: | UBERON:0000042 (serous membrane),UBERON:0004923 (organ component layer) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
... further results Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000060 (anatomical wall), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
