UBERON:0000489: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0000489
|name=cavitated compound organ
|namespace=
|def="Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
|xref=AAO...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:CARO_0000072-ZFA_0001490 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000489 | |||
|is_a=UBERON:0003103 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cavitated compound organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=organ_slim;;upper_level | |||
|synonym= | |||
|union_of= | |||
|xref=AAO:0010016;;AEO:0000072;;BILA:0000072;;CARO:0000072;;EHDAA2:0003072;;HAO:0000072;;TAO:0001490;;TGMA:0001857;;XAO:0003165;;ZFA:0001490 | |||
}} | }} | ||
Latest revision as of 17:10, 12 September 2014
| Name: | cavitated compound organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH] | ||
| Xrefs: |
| ||
| Alt_id: | UBERON:CARO_0000072-ZFA_0001490 | ||
| Subset: |
organ_slim upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003103(compound organ) |
|---|
Children
| is a: | UBERON:0001255 (urinary bladder),UBERON:0002113 (kidney),UBERON:0002240 (spinal cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10088-102B7
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10088-102B7
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000489 (cavitated compound organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.65e-72 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9 | p4@PAX2 |
| 2.65e-72 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9 | p4@PAX2 |
| 8.44e-61 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486 | p3@PAX2 |
| 8.44e-61 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486 | p3@PAX2 |
| 1.18e-58 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044 | p@chr2:693380..693398, + |
| 1.18e-58 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044 | p@chr2:693380..693398, + |
| 2.07e-58 | FFCP PHASE2:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243 | p@chr6:52175944..52175955, - |
| 2.07e-58 | FFCP PHASE1:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243 | p@chr6:52175944..52175955, - |
| 1.02e-55 | FFCP PHASE2:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87 | p1@PAX2 |
| 1.02e-55 | FFCP PHASE1:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87 | p1@PAX2 |
| 7.13e-55 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989 | p7@HOXA10 |
| 7.13e-55 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989 | p7@HOXA10 |
| 2.46e-53 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0 | p2@PAX2 |
| 2.46e-53 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0 | p2@PAX2 |
| 2.56e-53 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178 | p6@Hoxd8 |
| 2.56e-53 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178 | p6@Hoxd8 |
| 6.92e-53 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4 | p4@AIF1L |
| 6.92e-53 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4 | p4@AIF1L |
| 2.32e-52 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659 | p1@ENST00000418041, p1@ENST00000443104 |
| 2.32e-52 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659 | p1@ENST00000418041, p1@ENST00000443104 |
| 3.45e-51 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52 | p4@MEGF11 |
| 3.45e-51 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52 | p4@MEGF11 |
| 2.97e-49 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612c | p8@Hoxd8 |
| 2.97e-49 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612c | p8@Hoxd8 |
| 1.81e-48 | FFCP PHASE2:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279 | p3@Hoxb9 |
| 1.81e-48 | FFCP PHASE1:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279 | p3@Hoxb9 |
| 2.05e-48 | FFCP PHASE1:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06 | p1@Pax2 |
| 2.05e-48 | FFCP PHASE2:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06 | p1@Pax2 |
| 2.74e-46 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959 | p@chr9:119741711..119741743, - |
| 2.74e-46 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959 | p@chr9:119741711..119741743, - |
| 3.84e-46 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169 | p@chr18:3456189..3456200, + |
| 3.84e-46 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169 | p@chr18:3456189..3456200, + |
| 3.3e-45 | FFCP PHASE1:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0 | p@chr19:44821192..44821202, + |
| 3.3e-45 | FFCP PHASE2:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0 | p@chr19:44821192..44821202, + |
| 3.3e-45 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0 | p@chr19:44824107..44824111, - |
| 3.3e-45 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0 | p@chr19:44824107..44824111, - |
| 1.62e-43 | FFCP PHASE1:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3 | p2@Pax8 |
| 1.62e-43 | FFCP PHASE2:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3 | p2@Pax8 |
| 1.8e-42 | FFCP PHASE2:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22 | p5@Hoxb8 |
| 1.8e-42 | FFCP PHASE1:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22 | p5@Hoxb8 |
| 1.93e-42 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8a | p@chr7:7606139..7606151, - |
| 1.93e-42 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8a | p@chr7:7606139..7606151, - |
| 1.61e-41 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378f | p@chr10:3291561..3291580, + |
| 1.61e-41 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378f | p@chr10:3291561..3291580, + |
| 3.51e-41 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123 | p@chr19:44821149..44821161, + |
| 3.51e-41 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123 | p@chr19:44821149..44821161, + |
| 3.51e-41 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123 | p@chr19:44899724..44899728, + |
| 3.51e-41 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123 | p@chr19:44899724..44899728, + |
| 4.24e-41 | FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2c | p1@HOXD4 |
| 4.24e-41 | FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2c | p1@HOXD4 |
| 2.03e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eee | p5@PAX2 |
| 2.03e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eee | p5@PAX2 |
| 7.09e-40 | FFCP PHASE2:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831 | p@chr11:96133231..96133247, + |
| 7.09e-40 | FFCP PHASE1:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831 | p@chr11:96133231..96133247, + |
| 2.09e-39 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8 | p@chr8:107148422..107148433, + |
| 2.09e-39 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8 | p@chr8:107148422..107148433, + |
| 3.57e-39 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663 | p2@C14orf105 |
| 3.57e-39 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663 | p2@C14orf105 |
| 4.69e-39 | FFCP PHASE1:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64 | p3@Hoxd9 |
| 4.69e-39 | FFCP PHASE2:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64 | p3@Hoxd9 |
| 4.89e-39 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583f | p8@PAX2 |
| 4.89e-39 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583f | p8@PAX2 |
| 8.14e-39 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6a | p@chr1:1100457..1100470, + |
| 8.14e-39 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6a | p@chr1:1100457..1100470, + |
| 8.57e-39 | FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7 | p@chr16:88563264..88563271, - |
| 8.57e-39 | FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7 | p@chr16:88563264..88563271, - |
| 1.08e-38 | FFCP PHASE1:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684 | p@chr11:96146086..96146100, + |
| 1.08e-38 | FFCP PHASE2:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684 | p@chr11:96146086..96146100, + |
| 2.14e-38 | FFCP PHASE1:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683 | p@chr19:44821081..44821112, + |
| 2.14e-38 | FFCP PHASE2:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683 | p@chr19:44821081..44821112, + |
| 2.33e-38 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fa | p@chr10:50689167..50689171, + |
| 2.33e-38 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fa | p@chr10:50689167..50689171, + |
| 2.75e-38 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285 | p@chr5:24755801..24755819, + |
| 2.75e-38 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285 | p@chr5:24755801..24755819, + |
| 3.25e-38 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4 | p@chr19:59532611..59532623, + |
| 3.25e-38 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4 | p@chr19:59532611..59532623, + |
| 3.83e-38 | FFCP PHASE1:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568 | p6@HOXB8 |
| 3.83e-38 | FFCP PHASE2:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568 | p6@HOXB8 |
| 9.63e-38 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4 | p5@Cldn8 |
| 9.63e-38 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4 | p5@Cldn8 |
| 1.84e-37 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbb | p1@ENSMUST00000154177 |
| 1.84e-37 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbb | p1@ENSMUST00000154177 |
| 2.14e-37 | FFCP PHASE2:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85 | p5@Hoxd11 |
| 2.14e-37 | FFCP PHASE1:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85 | p5@Hoxd11 |
| 3.16e-37 | FFCP PHASE1:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3 | p1@Hoxd4 |
| 3.16e-37 | FFCP PHASE2:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3 | p1@Hoxd4 |
| 3.58e-37 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p7@Steap2 |
| 3.58e-37 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr10:39251651..39251690, + |
| 3.58e-37 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr10:79277411..79277429, + |
| 3.58e-37 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 3.58e-37 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p4@Ros1 |
| 3.58e-37 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr8:118959620..118959632, - |
| 3.58e-37 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr19:17554168..17554181, + |
| 3.58e-37 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr10:50622895..50622905, + |
| 3.58e-37 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr19:17554168..17554181, + |
| 3.58e-37 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p7@Steap2 |
| 3.58e-37 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p@chr7:47891824..47891827, - |
| 3.58e-37 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p3@uc009jll.1 |
| 3.58e-37 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p4@Ros1 |
| 3.58e-37 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_7ea0b1fb235147dbfab1ea0f1a3abc86 | p2@Nphs1 |
