Personal tools

UBERON:0000974: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000974 |name=neck |namespace= |def="Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatiall...")
 
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000974
|name=neck
|namespace=
|def="Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
|xref=AEO:0000108;;BTO:0000420;;EFO:0000967;;EHDAA2:0003108;;FMA:7155;;GAID:86;;galen:Neck;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg;;MA:0000024;;MAT:0000297;;MESH:A.01.598;;MIAA:0000297;;ncithesaurus:Neck;;OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA;;SCTID:302550007
|is_a=UBERON:0000475
|synonym=
|comment=TODO - generic definition
|alt_id=UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
|alt_id=UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
|disjoint_from=
|anatomical_img_id=FMA:7155
|union_of=
|comment=Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000974
|is_a=UBERON:0000475
|is_obsolete=
|located_in=
|located_in=
|name=neck
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000153;;UBERON:0007811
|part_of=UBERON:0000153;;UBERON:0007811
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value="dubious_for_taxon" NCBITaxon:32443;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="collum" RELATED LATIN [Wikipedia:Neck]
|union_of=
|xref=AEO:0000108;;BTO:0000420;;EFO:0000967;;EHDAA2:0003108;;FMA:7155;;GAID:86;;galen:Neck;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg;;MA:0000024;;MAT:0000297;;MESH:A.01.598;;MIAA:0000297;;ncithesaurus:Neck;;OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA;;SCTID:302550007
}}
}}

Latest revision as of 17:12, 12 September 2014

Name:neck
Namespace:FANTOM
Definition:"Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
Xrefs:
links:

AEO:0000108
BTO:0000420
EFO:0000967
EHDAA2:0003108
FMA:7155
GAID:86
galen:Neck
[1]
MA:0000024
MAT:0000297
MESH:A.01.598
MIAA:0000297
ncithesaurus:Neck
OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA

SCTID:302550007
Synonyms: "collum" RELATED LATIN [Wikipedia:Neck]
Comments:Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
Alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0000153(anterior region of body),UBERON:0007811(craniocervical region)



Children

part of:UBERON:0000341 (throat),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000974 (neck), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data