UBERON:0001155: Difference between revisions
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(Created page with "{{UBERON
|id=UBERON:0001155
|name=colon
|namespace=
|def="Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before the...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 | ||
|anatomical_img_id=FMA:14543 | |||
| | |||
|comment=TODO: abstract this such that it legitimately covers all vertebrates | |comment=TODO: abstract this such that it legitimately covers all vertebrates | ||
|created_by= | |created_by= | ||
| | |def="Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001155 | |||
|is_a=UBERON:0004921 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=colon | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000059 | |part_of=UBERON:0000059 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string;;UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="hindgut" RELATED [];;"large bowel" EXACT [];;"posterior intestine" NARROW [];;"posterior intestine - zebrafish" BROAD [] | |||
|union_of= | |||
|xref=AAO:0010400;;BTO:0000269;;EFO:0000361;;EHDAA2:0000779;;EMAPA:18939;;EV:0100079;;FMA:14543;;GAID:309;;galen:Colon;;MA:0000335;;MAP:0000001;;MAT:0000526;;MESH:A.03.492.411.495.356;;ncithesaurus:Colon;;OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA;;SCTID:302508007;;TAO:0000706;;VHOG:0000648;;XAO:0000243;;ZFA:0000706 | |||
}} | }} |
Latest revision as of 17:16, 12 September 2014
Name: | colon | |
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Namespace: | FANTOM | |
Definition: | "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href | |
Xrefs: |
| |
Synonyms: |
"hindgut" RELATED [] "large bowel" EXACT [] "posterior intestine" NARROW [] "posterior intestine - zebrafish" BROAD [] | |
Comments: | TODO: abstract this such that it legitimately covers all vertebrates | |
Alt_id: | UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract) |
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part_of: | UBERON:0000059(large intestine) |
Children
is a: | FF:0100797 (colonic cancer cell line) |
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derives from: | FF:0010014 (human colon - adult sample),FF:0010070 (human colon - fetal sample),FF:0011323 (mouse colon- adult sample) |
part of: | FF:0000181 (human smooth muscle of colon sample),UBERON:0001153 (caecum),FF:0010070 (human colon - fetal sample),CL:1000280 (smooth muscle cell of colon) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001155 (colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.