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{{UBERON
{{UBERON
|id=UBERON:0001155
|alt_id=UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
|name=colon
|anatomical_img_id=FMA:14543
|namespace=
|def="Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a>" [Wikipedia:Colon_(anatomy), ZFIN:curator]
|xref=AAO:0010400;;BTO:0000269;;EFO:0000361;;EHDAA2:0000779;;EMAPA:18939;;EV:0100079;;FMA:14543;;GAID:309;;galen:Colon;;MA:0000335;;MAP:0000001;;MAT:0000526;;MESH:A.03.492.411.495.356;;ncithesaurus:Colon;;OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA;;SCTID:302508007;;TAO:0000706;;VHOG:0000648;;XAO:0000243;;ZFA:0000706
|is_a=UBERON:0000063;;UBERON:0004119
|synonym="hindgut" RELATED [];;"large bowel" EXACT [];;"posterior intestine" NARROW [];;"posterior intestine - zebrafish" BROAD []
|comment=TODO: abstract this such that it legitimately covers all vertebrates
|comment=TODO: abstract this such that it legitimately covers all vertebrates
|alt_id=UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001155
|is_a=UBERON:0004921
|is_obsolete=
|located_in=
|located_in=
|name=colon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000059
|part_of=UBERON:0000059
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string;;UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="hindgut" RELATED [];;"large bowel" EXACT [];;"posterior intestine" NARROW [];;"posterior intestine - zebrafish" BROAD []
|union_of=
|xref=AAO:0010400;;BTO:0000269;;EFO:0000361;;EHDAA2:0000779;;EMAPA:18939;;EV:0100079;;FMA:14543;;GAID:309;;galen:Colon;;MA:0000335;;MAP:0000001;;MAT:0000526;;MESH:A.03.492.411.495.356;;ncithesaurus:Colon;;OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA;;SCTID:302508007;;TAO:0000706;;VHOG:0000648;;XAO:0000243;;ZFA:0000706
}}
}}

Latest revision as of 17:16, 12 September 2014

Name:colon
Namespace:FANTOM
Definition:"Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href
Xrefs:
links:

AAO:0010400
BTO:0000269
EFO:0000361
EHDAA2:0000779
EMAPA:18939
EV:0100079
FMA:14543
GAID:309
galen:Colon
MA:0000335
MAP:0000001
MAT:0000526
MESH:A.03.492.411.495.356
ncithesaurus:Colon
OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
SCTID:302508007
TAO:0000706
VHOG:0000648
XAO:0000243

ZFA:0000706
Synonyms: "hindgut" RELATED []
"large bowel" EXACT []
"posterior intestine" NARROW []
"posterior intestine - zebrafish" BROAD []
Comments:TODO: abstract this such that it legitimately covers all vertebrates
Alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0000059(large intestine)



Children

is a:FF:0100797 (colonic cancer cell line)
derives from:FF:0010014 (human colon - adult sample),FF:0010070 (human colon - fetal sample),FF:0011323 (mouse colon- adult sample)
part of:FF:0000181 (human smooth muscle of colon sample),UBERON:0001153 (caecum),FF:0010070 (human colon - fetal sample),CL:1000280 (smooth muscle cell of colon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001155 (colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.