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{{UBERON
{{UBERON
|id=UBERON:0001882
|alt_id=UBERON:FMA_61889-MA_0000892
|name=nucleus accumbens
|namespace=
|def="a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
|xref=ABA:ACB;;BM:Ac;;BTO:0001862;;EFO:0000906;;EHDAA2:0004707;;FMA:61889;;GAID:672;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg;;MA:0000892;;MAT:0000512;;MESH:A.08.186.211.730.885.105.683;;ncithesaurus:Accumbens_Nucleus;;NIF_GrossAnatomy:birnlex_727;;SCTID:427667007
|is_a=UBERON:0002308;;UBERON:0009663
|synonym="accumbens nucleus" EXACT [];;"colliculus of caudate nucleus" EXACT [];;"nucleus accumbens septi" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_61889-MA_0000892
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001882
|is_a=UBERON:0009663
|is_obsolete=
|located_in=
|located_in=
|name=nucleus accumbens
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000349;;UBERON:0001869;;UBERON:0005403
|part_of=UBERON:0000349;;UBERON:0001869;;UBERON:0005403
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0001883
|subset=uberon_slim
|synonym="accumbens nucleus" EXACT [];;"colliculus of caudate nucleus" EXACT [];;"nucleus accumbens septi" EXACT [];;"nucleus accumbens septi" RELATED LATIN [Wikipedia:Nucleus_accumbens]
|union_of=
|xref=ABA:ACB;;BM:Ac;;BTO:0001862;;EFO:0000906;;EHDAA2:0004707;;FMA:61889;;GAID:672;;http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg;;MA:0000892;;MAT:0000512;;MESH:A.08.186.211.730.885.105.683;;ncithesaurus:Accumbens_Nucleus;;NIF_GrossAnatomy:birnlex_727;;SCTID:427667007
}}
}}

Latest revision as of 17:22, 12 September 2014

Name:nucleus accumbens
Namespace:FANTOM
Definition:"a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
Xrefs:
links:

ABA:ACB
BM:Ac
BTO:0001862
EFO:0000906
EHDAA2:0004707
FMA:61889
GAID:672
[1]
[2]
MA:0000892
MAT:0000512
MESH:A.08.186.211.730.885.105.683
ncithesaurus:Accumbens_Nucleus
NIF_GrossAnatomy:birnlex_727

SCTID:427667007
Synonyms: "accumbens nucleus" EXACT []
"colliculus of caudate nucleus" EXACT []
"nucleus accumbens septi" EXACT []
"nucleus accumbens septi" RELATED LATIN [Wikipedia:Nucleus_accumbens]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_61889-MA_0000892
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009663(telencephalic nucleus)
part_of:UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0005403(ventral striatum)



Children

derives from:FF:0010037 (human nucleus accumbens - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001882 (nucleus accumbens), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr9:19788870..19788880,+#_4300241e37e1619e29e8460dbbc3d65cp@chr9:19788870..19788880, +
5.42e-195FFCP PHASE1:Hg19::chr9:19788870..19788880,+#_4300241e37e1619e29e8460dbbc3d65cp@chr9:19788870..19788880, +
5.42e-195FFCP PHASE2:Hg19::chr9:5304713..5304719,-#_4300241e37e1619e29e8460dbbc3d65cp1@RLN2
5.42e-195FFCP PHASE1:Hg19::chr9:5304713..5304719,-#_4300241e37e1619e29e8460dbbc3d65cp1@RLN2
2.55e-98FFCP PHASE1:Hg19::chr11:18765490..18765499,-#_9c0f70db6329d1e6e36850951c33cff1p16@PTPN5
2.55e-98FFCP PHASE1:Hg19::chr16:28075097..28075108,-#_9c0f70db6329d1e6e36850951c33cff1p7@GSG1L
2.55e-98FFCP PHASE2:Hg19::chr16:28075097..28075108,-#_9c0f70db6329d1e6e36850951c33cff1p7@GSG1L
2.55e-98FFCP PHASE2:Hg19::chr11:18765490..18765499,-#_9c0f70db6329d1e6e36850951c33cff1p16@PTPN5
2.39e-66FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_dde2b635b62edf9d05af3c65bd22119fp@chr3:63542313..63542321, +
2.39e-66FFCP PHASE1:Hg19::chr1:229478819..229478822,-#_dde2b635b62edf9d05af3c65bd22119fp8@C1orf96
2.39e-66FFCP PHASE1:Hg19::chr12:54943367..54943368,+#_dde2b635b62edf9d05af3c65bd22119fp9@PDE1B
2.39e-66FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_dde2b635b62edf9d05af3c65bd22119fp27@GNAL
2.39e-66FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_dde2b635b62edf9d05af3c65bd22119fp27@GNAL
2.39e-66FFCP PHASE2:Hg19::chr12:54943367..54943368,+#_dde2b635b62edf9d05af3c65bd22119fp9@PDE1B
2.39e-66FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_dde2b635b62edf9d05af3c65bd22119fp@chr3:63542313..63542321, +
2.39e-66FFCP PHASE2:Hg19::chr1:229478819..229478822,-#_dde2b635b62edf9d05af3c65bd22119fp8@C1orf96
4.66e-66FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp2@DGKH
4.66e-66FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp22@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr4:71945904..71945922, +
4.66e-66FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr8:115354253..115354290, +
4.66e-66FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr15:37777334..37777345, -
4.66e-66FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chrX:102663083..102663098, +
4.66e-66FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp2@DGKH
4.66e-66FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr4:71945904..71945922, +
4.66e-66FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr8:115354253..115354290, +
4.66e-66FFCP PHASE2:Hg19::chr1:228399053..228399061,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr1:228399053..228399061, -
4.66e-66FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp11@SCN8A
4.66e-66FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr11:47617035..47617045, -
4.66e-66FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr11:47617035..47617045, -
4.66e-66FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp22@PRLR
4.66e-66FFCP PHASE1:Hg19::chr1:228399053..228399061,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr1:228399053..228399061, -
4.66e-66FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chrX:102663083..102663098, +
4.66e-66FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp11@SCN8A
4.66e-66FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddfp@chr15:37777334..37777345, -
2.42e-50FFCP PHASE2:Hg19::chr11:63258167..63258182,-#_44cc96b3c0510cdf54ff7f97895bebe6p8@HRASLS5
2.42e-50FFCP PHASE1:Hg19::chr11:63258167..63258182,-#_44cc96b3c0510cdf54ff7f97895bebe6p8@HRASLS5
2.42e-50FFCP PHASE2:Hg19::chr4:8073763..8073768,-#_44cc96b3c0510cdf54ff7f97895bebe6p11@ABLIM2
2.42e-50FFCP PHASE1:Hg19::chr4:8073763..8073768,-#_44cc96b3c0510cdf54ff7f97895bebe6p11@ABLIM2
3.99e-50FFCP PHASE1:Hg19::chr7:111424008..111424024,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:111424008..111424024, -
3.99e-50FFCP PHASE1:Hg19::chr7:22382780..22382797,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:22382780..22382797, -
3.99e-50FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_154979f6036cb1bae1de14dcff658a3dp@chr14:78638610..78638621, +
3.99e-50FFCP PHASE2:Hg19::chr2:173600459..173600464,+#_154979f6036cb1bae1de14dcff658a3dp21@RAPGEF4
3.99e-50FFCP PHASE2:Hg19::chr19:57269846..57269858,-#_154979f6036cb1bae1de14dcff658a3dp@chr19:57269846..57269858, -
3.99e-50FFCP PHASE2:Hg19::chr11:47616996..47617008,-#_154979f6036cb1bae1de14dcff658a3dp@chr11:47616996..47617008, -
3.99e-50FFCP PHASE2:Hg19::chr7:4998664..4998674,-#_154979f6036cb1bae1de14dcff658a3dp2@MMD2
3.99e-50FFCP PHASE1:Hg19::chr11:47616996..47617008,-#_154979f6036cb1bae1de14dcff658a3dp@chr11:47616996..47617008, -
3.99e-50FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_154979f6036cb1bae1de14dcff658a3dp@chr15:35546154..35546174, -
3.99e-50FFCP PHASE1:Hg19::chr2:173600459..173600464,+#_154979f6036cb1bae1de14dcff658a3dp21@RAPGEF4
3.99e-50FFCP PHASE1:Hg19::chr19:57269846..57269858,-#_154979f6036cb1bae1de14dcff658a3dp@chr19:57269846..57269858, -
3.99e-50FFCP PHASE2:Hg19::chr16:645297..645302,+#_154979f6036cb1bae1de14dcff658a3dp@chr16:645297..645302, +
3.99e-50FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:22382758..22382765, -
3.99e-50FFCP PHASE1:Hg19::chr7:4998664..4998674,-#_154979f6036cb1bae1de14dcff658a3dp2@MMD2
3.99e-50FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_154979f6036cb1bae1de14dcff658a3dp@chr15:35546154..35546174, -
3.99e-50FFCP PHASE2:Hg19::chr7:111424008..111424024,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:111424008..111424024, -
3.99e-50FFCP PHASE1:Hg19::chr16:645297..645302,+#_154979f6036cb1bae1de14dcff658a3dp@chr16:645297..645302, +
3.99e-50FFCP PHASE2:Hg19::chr7:22382780..22382797,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:22382780..22382797, -
3.99e-50FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_154979f6036cb1bae1de14dcff658a3dp@chr14:78638610..78638621, +
3.99e-50FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_154979f6036cb1bae1de14dcff658a3dp@chr7:22382758..22382765, -
6.58e-50FFCP PHASE2:Hg19::chrX:132091252..132091261,-#_48ab3ebd223ef2178ebb0ca2c90e4676p17@HS6ST2
6.58e-50FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_48ab3ebd223ef2178ebb0ca2c90e4676p20@WIPF3
6.58e-50FFCP PHASE2:Hg19::chrX:85969610..85969619,+#_48ab3ebd223ef2178ebb0ca2c90e4676p4@DACH2
6.58e-50FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr1:31352916..31352926, -
6.58e-50FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr12:6031299..6031315, -
6.58e-50FFCP PHASE2:Hg19::chr14:71905629..71905640,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr14:71905629..71905640, +
6.58e-50FFCP PHASE1:Hg19::chrX:132091252..132091261,-#_48ab3ebd223ef2178ebb0ca2c90e4676p17@HS6ST2
6.58e-50FFCP PHASE2:Hg19::chr21:45788960..45788972,+#_48ab3ebd223ef2178ebb0ca2c90e4676p12@TRPM2
6.58e-50FFCP PHASE1:Hg19::chrX:85969610..85969619,+#_48ab3ebd223ef2178ebb0ca2c90e4676p4@DACH2
6.58e-50FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr2:152828264..152828299, -
6.58e-50FFCP PHASE1:Hg19::chr12:49375345..49375356,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr12:49375345..49375356, -
6.58e-50FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr13:112726433..112726446, +
6.58e-50FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr12:6031299..6031315, -
6.58e-50FFCP PHASE2:Hg19::chr8:75564025..75564036,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr8:75564025..75564036, +
6.58e-50FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr18:47967428..47967437, -
6.58e-50FFCP PHASE1:Hg19::chr21:45788960..45788972,+#_48ab3ebd223ef2178ebb0ca2c90e4676p12@TRPM2
6.58e-50FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr2:152828264..152828299, -
6.58e-50FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr18:47967428..47967437, -
6.58e-50FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr13:112726433..112726446, +
6.58e-50FFCP PHASE1:Hg19::chr8:75564025..75564036,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr8:75564025..75564036, +
6.58e-50FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_48ab3ebd223ef2178ebb0ca2c90e4676p20@WIPF3
6.58e-50FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr1:31352916..31352926, -
6.58e-50FFCP PHASE2:Hg19::chr12:49375345..49375356,-#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr12:49375345..49375356, -
6.58e-50FFCP PHASE1:Hg19::chr14:71905629..71905640,+#_48ab3ebd223ef2178ebb0ca2c90e4676p@chr14:71905629..71905640, +
6.62e-41FFCP PHASE2:Hg19::chr11:130011708..130011717,+#_5deeb9411efcabeda57b45a9ac88b3c1p18@APLP2
6.62e-41FFCP PHASE1:Hg19::chr11:130011708..130011717,+#_5deeb9411efcabeda57b45a9ac88b3c1p18@APLP2
9.91e-41FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_a10ecaf3d0dfc6191759ef1b11cf4a7ap23@KCNAB1
9.91e-41FFCP PHASE1:Hg19::chr12:11652913..11652927,+#_a10ecaf3d0dfc6191759ef1b11cf4a7ap@chr12:11652913..11652927, +
9.91e-41FFCP PHASE2:Hg19::chr1:35198521..35198523,-#_a10ecaf3d0dfc6191759ef1b11cf4a7ap@chr1:35198521..35198523, -
9.91e-41FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_a10ecaf3d0dfc6191759ef1b11cf4a7ap23@KCNAB1
9.91e-41FFCP PHASE1:Hg19::chr1:35198521..35198523,-#_a10ecaf3d0dfc6191759ef1b11cf4a7ap@chr1:35198521..35198523, -
9.91e-41FFCP PHASE2:Hg19::chr12:11652913..11652927,+#_a10ecaf3d0dfc6191759ef1b11cf4a7ap@chr12:11652913..11652927, +
1.48e-40FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr3:57807798..57807809, +
1.48e-40FFCP PHASE2:Hg19::chr7:143582357..143582366,-#_54022eca76e7feb4bfaf5cec7c93f4b5p9@FAM115A
1.48e-40FFCP PHASE2:Hg19::chr6:145132414..145132428,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr6:145132414..145132428, +
1.48e-40FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr3:57807798..57807809, +
1.48e-40FFCP PHASE1:Hg19::chr7:143582357..143582366,-#_54022eca76e7feb4bfaf5cec7c93f4b5p9@FAM115A
1.48e-40FFCP PHASE1:Hg19::chr6:145132414..145132428,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr6:145132414..145132428, +
1.48e-40FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr20:9496091..9496106, +
1.48e-40FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_54022eca76e7feb4bfaf5cec7c93f4b5p2@BC051739
1.48e-40FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr20:9496091..9496106, +
1.48e-40FFCP PHASE2:Hg19::chr6:19877308..19877326,-#_54022eca76e7feb4bfaf5cec7c93f4b5p@chr6:19877308..19877326, -

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