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{{UBERON
{{UBERON
|id=UBERON:0002097
|alt_id=UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
|name=skin of body
|anatomical_img_id=FMA:7163
|namespace=
|def="Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin]
|xref=BTO:0001253;;EFO:0000962;;EHDAA2:0001844;;EMAPA:17525;;FMA:7163;;galen:Skin;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MESH:A.17.815;;ncithesaurus:Skin;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:181469002;;XAO:0000023
|is_a=UBERON:0000062
|synonym="entire skin" EXACT [];;"integument" RELATED [];;"skin" RELATED []
|comment=Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
|comment=Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
|alt_id=UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin]
|subset=major_organ;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0011272
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002097
|is_a=UBERON:0000062 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=skin of body
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002199
|part_of=UBERON:0002199
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=major_organ;;uberon_slim
|synonym="entire skin" EXACT [];;"integument" RELATED [];;"pelt" RELATED [];;"skin" RELATED []
|union_of=
|xref=BTO:0001253;;EFO:0000962;;EHDAA2:0001844;;EMAPA:17525;;FMA:7163;;galen:Skin;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png;;MESH:A.17.815;;ncithesaurus:Skin;;OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA;;SCTID:181469002;;XAO:0000023
}}
}}

Latest revision as of 17:25, 12 September 2014

Name:skin of body
Namespace:FANTOM
Definition:"Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin]
Xrefs:
links:

BTO:0001253
EFO:0000962
EHDAA2:0001844
EMAPA:17525
FMA:7163
galen:Skin
[ 200px-Skin.svg.png 200px-Skin.svg.png]
MESH:A.17.815
ncithesaurus:Skin
OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
SCTID:181469002

XAO:0000023
Synonyms: "entire skin" EXACT []
"integument" RELATED []
"pelt" RELATED []
"skin" RELATED []
Comments:Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
Alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
Subset: major_organ
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0011272(embryonic skin basal layer)
part_of:UBERON:0002199(integument)



Children

is a:FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso)
part of:UBERON:0000014 (zone of skin),UBERON:0001003 (skin epidermis),UBERON:0001705 (nail),UBERON:0002067 (dermis),UBERON:0002284 (hyponychium),UBERON:0002419 (skin gland),CL:0002620 (skin fibroblast),UBERON:0003487 (skin sebaceous gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002097 (skin of body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_4a7c20bd216a57c0900b7931809bd5efp2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_4a7c20bd216a57c0900b7931809bd5efp@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_4a7c20bd216a57c0900b7931809bd5efp@chr11:36246521..36246530, -
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_4a7c20bd216a57c0900b7931809bd5efp@chr13:113381448..113381495, -
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_4a7c20bd216a57c0900b7931809bd5efp2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_4a7c20bd216a57c0900b7931809bd5efp@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_4a7c20bd216a57c0900b7931809bd5efp1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_4a7c20bd216a57c0900b7931809bd5efp1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_4a7c20bd216a57c0900b7931809bd5efp@chr1:191609138..191609151, +
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_4a7c20bd216a57c0900b7931809bd5efp@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_4a7c20bd216a57c0900b7931809bd5efp2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_4a7c20bd216a57c0900b7931809bd5efp2@Dlx3
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_4a7c20bd216a57c0900b7931809bd5efp2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_4a7c20bd216a57c0900b7931809bd5efp2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_4a7c20bd216a57c0900b7931809bd5efp@chr11:99227413..99227429, -
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_4a7c20bd216a57c0900b7931809bd5efp1@Krt74
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_4a7c20bd216a57c0900b7931809bd5efp@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_4a7c20bd216a57c0900b7931809bd5efp1@Skint11
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_4a7c20bd216a57c0900b7931809bd5efp@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_4a7c20bd216a57c0900b7931809bd5efp@chr13:113381448..113381495, -
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr11:99207849..99207853, -
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr5:137057441..137057450, -
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr3:90343597..90343613, +
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr7:97432305..97432311, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_8ca31f84a07f8453d4b6326c29121fd0p1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr7:97432305..97432311, +
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_8ca31f84a07f8453d4b6326c29121fd0p6@Mfsd4
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_8ca31f84a07f8453d4b6326c29121fd0p@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_8ca31f84a07f8453d4b6326c29121fd0p1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr1:46949894..46949911, -
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_8ca31f84a07f8453d4b6326c29121fd0p@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_8ca31f84a07f8453d4b6326c29121fd0p6@Mfsd4
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_f6d350ccc52e460e59045a63479f90bdp1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_f6d350ccc52e460e59045a63479f90bdp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_f6d350ccc52e460e59045a63479f90bdp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_f6d350ccc52e460e59045a63479f90bdp@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_f6d350ccc52e460e59045a63479f90bdp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_f6d350ccc52e460e59045a63479f90bdp@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_f6d350ccc52e460e59045a63479f90bdp1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_f6d350ccc52e460e59045a63479f90bdp1@Actbl2
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_f6d350ccc52e460e59045a63479f90bdp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_f6d350ccc52e460e59045a63479f90bdp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_f6d350ccc52e460e59045a63479f90bdp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_f6d350ccc52e460e59045a63479f90bdp1@Actbl2
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_f6d350ccc52e460e59045a63479f90bdp@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_f6d350ccc52e460e59045a63479f90bdp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_f6d350ccc52e460e59045a63479f90bdp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_f6d350ccc52e460e59045a63479f90bdp25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_f6d350ccc52e460e59045a63479f90bdp25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_f6d350ccc52e460e59045a63479f90bdp@chr10:43724117..43724131, -
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_3e56eaef0116e67704b474261f9ec142p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_3e56eaef0116e67704b474261f9ec142p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_3e56eaef0116e67704b474261f9ec142p@chr7:117436977..117436981, -
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_3e56eaef0116e67704b474261f9ec142p6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_3e56eaef0116e67704b474261f9ec142p@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_3e56eaef0116e67704b474261f9ec142p6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_3e56eaef0116e67704b474261f9ec142p@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_3e56eaef0116e67704b474261f9ec142p@chr1:89485356..89485361, +
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_189fdec95512facd01dedec09bd09f47p1@Skint5
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_189fdec95512facd01dedec09bd09f47p1@Skint5
1.65e-69FFCP PHASE1:Mm9::chr5:113617681..113617724,-#_d316dbfacc4c9e7caad678b8131f5043p@chr5:113617681..113617724, -
1.65e-69FFCP PHASE1:Mm9::chr18:20631745..20631746,+#_d316dbfacc4c9e7caad678b8131f5043p@chr18:20631745..20631746, +
1.65e-69FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_d316dbfacc4c9e7caad678b8131f5043p@chr9:43876286..43876293, +
1.65e-69FFCP PHASE1:Mm9::chr5:137057650..137057655,-#_d316dbfacc4c9e7caad678b8131f5043p@chr5:137057650..137057655, -
1.65e-69FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_d316dbfacc4c9e7caad678b8131f5043p1@Otop2
1.65e-69FFCP PHASE1:Mm9::chr6:142831327..142831375,+#_d316dbfacc4c9e7caad678b8131f5043p@chr6:142831327..142831375, +
1.65e-69FFCP PHASE1:Mm9::chr3:93247460..93247471,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93247460..93247471, +
1.65e-69FFCP PHASE1:Mm9::chr15:101770858..101770865,-#_d316dbfacc4c9e7caad678b8131f5043p2@Krt79
1.65e-69FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_d316dbfacc4c9e7caad678b8131f5043p2@Krt79
1.65e-69FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_d316dbfacc4c9e7caad678b8131f5043p@chr8:63958211..63958219, +
1.65e-69FFCP PHASE1:Mm9::chr3:93249466..93249478,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93249466..93249478, +
1.65e-69FFCP PHASE2:Mm9::chr3:93248889..93248897,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93248889..93248897, +
1.65e-69FFCP PHASE2:Mm9::chr5:75107109..75107125,-#_d316dbfacc4c9e7caad678b8131f5043p@chr5:75107109..75107125, -
1.65e-69FFCP PHASE1:Mm9::chr15:12444430..12444439,-#_d316dbfacc4c9e7caad678b8131f5043p@chr15:12444430..12444439, -
1.65e-69FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_d316dbfacc4c9e7caad678b8131f5043p@chr4:57351817..57351823, -
1.65e-69FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_d316dbfacc4c9e7caad678b8131f5043p@chr9:67169769..67169780, -
1.65e-69FFCP PHASE1:Mm9::chr3:93248809..93248818,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93248809..93248818, +
1.65e-69FFCP PHASE2:Mm9::chr1:129125186..129125194,+#_d316dbfacc4c9e7caad678b8131f5043p@chr1:129125186..129125194, +
1.65e-69FFCP PHASE2:Mm9::chr5:81472249..81472294,+#_d316dbfacc4c9e7caad678b8131f5043p@chr5:81472249..81472294, +
1.65e-69FFCP PHASE2:Mm9::chr18:20631745..20631746,+#_d316dbfacc4c9e7caad678b8131f5043p@chr18:20631745..20631746, +
1.65e-69FFCP PHASE1:Mm9::chr3:93248462..93248471,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93248462..93248471, +
1.65e-69FFCP PHASE1:Mm9::chr9:67169769..67169780,-#_d316dbfacc4c9e7caad678b8131f5043p@chr9:67169769..67169780, -
1.65e-69FFCP PHASE1:Mm9::chr1:192537956..192537958,+#_d316dbfacc4c9e7caad678b8131f5043p@chr1:192537956..192537958, +
1.65e-69FFCP PHASE1:Mm9::chr1:129125186..129125194,+#_d316dbfacc4c9e7caad678b8131f5043p@chr1:129125186..129125194, +
1.65e-69FFCP PHASE2:Mm9::chr3:59629633..59629644,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:59629633..59629644, +
1.65e-69FFCP PHASE2:Mm9::chr4:135527809..135527823,-#_d316dbfacc4c9e7caad678b8131f5043p4@Lypla2
1.65e-69FFCP PHASE2:Mm9::chr11:99957587..99957593,-#_d316dbfacc4c9e7caad678b8131f5043p2@Krt35
1.65e-69FFCP PHASE1:Mm9::chr1:46949977..46949981,-#_d316dbfacc4c9e7caad678b8131f5043p@chr1:46949977..46949981, -
1.65e-69FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_d316dbfacc4c9e7caad678b8131f5043p8@Zdhhc21
1.65e-69FFCP PHASE1:Mm9::chr4:57351817..57351823,-#_d316dbfacc4c9e7caad678b8131f5043p@chr4:57351817..57351823, -
1.65e-69FFCP PHASE2:Mm9::chr6:142831327..142831375,+#_d316dbfacc4c9e7caad678b8131f5043p@chr6:142831327..142831375, +
1.65e-69FFCP PHASE1:Mm9::chr6:144579044..144579056,-#_d316dbfacc4c9e7caad678b8131f5043p@chr6:144579044..144579056, -
1.65e-69FFCP PHASE1:Mm9::chr5:81472249..81472294,+#_d316dbfacc4c9e7caad678b8131f5043p@chr5:81472249..81472294, +
1.65e-69FFCP PHASE2:Mm9::chr3:93248462..93248471,+#_d316dbfacc4c9e7caad678b8131f5043p@chr3:93248462..93248471, +

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