UBERON:0009661: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0009661
|name=midbrain nucleus
|namespace=
|def="Nucleus located in the midbrain." [ZFIN:curator]
|xref=SCTID:279285003;;TAO:0002209;;ZFA:0001665
|is...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Nucleus located in the midbrain." [ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0009661 | |||
|is_a=UBERON:0002308 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=midbrain nucleus | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001891 | |part_of=UBERON:0001891 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=SCTID:279285003;;TAO:0002209;;ZFA:0001665 | |||
}} | }} | ||
Latest revision as of 18:06, 12 September 2014
| Name: | midbrain nucleus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Nucleus located in the midbrain." [ZFIN:curator] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002308(nucleus of brain) |
|---|---|
| part_of: | UBERON:0001891(midbrain) |
Children
| is a: | UBERON:0002038 (substantia nigra) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Mouse (Mus musculus)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009661 (midbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396 | p59@ANK3 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396 | p59@ANK3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396 | p5@C1orf130 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396 | p5@C1orf130 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr4:56229918..56229919, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396 | p@chr4:56229918..56229919, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8b | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8b | p@chr1:65776926..65776928, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8b | p@chr18:74702556..74702558, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8b | p@chr1:65776926..65776928, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8b | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8b | p@chr18:74702556..74702558, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524 | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524 | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524 | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524 | p@chr8:53312058..53312067, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524 | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524 | p6@PKD1L2 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524 | p@chr8:53312058..53312067, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524 | p6@PKD1L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84 | p@chr14:95727527..95727529, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84 | p@chr14:95727527..95727529, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84 | p@chr11:7340444..7340448, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84 | p@chr1:44956567..44956571, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84 | p@chr1:44956567..44956571, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84 | p@chr11:7340444..7340448, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994a | p@chr13:43872447..43872452, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994a | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994a | p@chr13:34922094..34922105, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994a | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994a | p8@OMG |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994a | p@chr13:34922094..34922105, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994a | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994a | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994a | p8@OMG |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994a | p@chr13:43872447..43872452, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60 | p@chr9:108178201..108178203, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60 | p@chr9:108178201..108178203, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953 | p@chr20:52570026..52570037, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953 | p@chr20:52570026..52570037, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953 | p@chr3:50717966..50717971, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953 | p@chr3:50717966..50717971, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p10@KCNJ10 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p10@KCNJ10 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr17:70910145..70910148, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299d | p@chr17:70910145..70910148, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cb | p@chr4:134073493..134073502, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cb | p@chr4:134073493..134073502, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011f | p4@C5orf64 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011f | p@chr4:139891920..139891924, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011f | p@chr4:139891920..139891924, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011f | p4@C5orf64 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64 | p@chrX:13792462..13792477, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64 | p@chr13:21100208..21100214, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64 | p@chr13:21100208..21100214, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64 | p@chrX:13792462..13792477, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481e | p10@CELSR2 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481e | p@chr9:139911084..139911102, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481e | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481e | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481e | p@chr9:139911084..139911102, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481e | p@chr2:135170207..135170218, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481e | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481e | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481e | p@chr2:135170207..135170218, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481e | p10@CELSR2 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_77b015ddfc114ec96c889166e40500e8 | p4@SLC24A2 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_77b015ddfc114ec96c889166e40500e8 | p19@ADARB2 |
| 2.21e-40 | FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_77b015ddfc114ec96c889166e40500e8 | p@chrX:103046993..103046994, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_77b015ddfc114ec96c889166e40500e8 | p@chr8:27522642..27522647, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_77b015ddfc114ec96c889166e40500e8 | p20@ADARB2 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_77b015ddfc114ec96c889166e40500e8 | p4@SLC24A2 |
