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{{UBERON
{{UBERON
|id=UBERON:0010009
|alt_id=
|name=aggregate regional part of brain
|namespace=
|def="A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509]
|xref=FMA:256381;;NIF_GrossAnatomy:nlx_anat_20090509
|is_a=UBERON:0002616
|synonym="set of nuclei of neuraxis" EXACT [FMA:256381]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010009
|is_a=UBERON:0002616
|is_obsolete=
|located_in=
|located_in=
|name=aggregate regional part of brain
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="set of nuclei of neuraxis" EXACT [FMA:256381]
|union_of=
|xref=FMA:256381;;NIF_GrossAnatomy:nlx_anat_20090509
}}
}}

Latest revision as of 18:07, 12 September 2014

Name:aggregate regional part of brain
Namespace:FANTOM
Definition:"A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509]
Xrefs:
links:

FMA:256381

NIF_GrossAnatomy:nlx_anat_20090509
Synonyms: "set of nuclei of neuraxis" EXACT [FMA:256381]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain)



Children

is a:UBERON:0010011 (collection of basal ganglia)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010009 (aggregate regional part of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.82e-133FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268p22@GNAL
1.82e-133FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_f5aeaddf46c23a6bf89eb166a044e268p22@GNAL
1.42e-130FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34p@chr15:40582949..40582989, +
1.42e-130FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_0d5e60ea51f41a9dd5f38e786e277b34p@chr15:40582949..40582989, +
1.21e-118FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037p28@ARPP21
1.21e-118FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_9eeb0a3ec917130a8471370d3e7c0037p28@ARPP21
3.02e-112FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474p@chr13:98995904..98995913, +
3.02e-112FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_22c890d6eec46d762516903755acb474p@chr13:98995904..98995913, +
3.66e-112FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33p@chr11:80886203..80886231, +
3.66e-112FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_97817e3c73366744c13b77f293304e33p@chr11:80886203..80886231, +
6.51e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bcp@chr2:7112752..7112770, +
6.51e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_b53229448965931f8ba586f4e972f0bcp@chr2:7112752..7112770, +
7.88e-112FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829p3@ENST00000413244
7.88e-112FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1a86cfb26b5d299b09f6e3da4e769829p3@ENST00000413244
4.6e-109FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_fc5bdd5c406b7fef78f66cccaca3f573p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr17:19390211..19390223, +
4.6e-109FFCP PHASE2:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr19:719510..719520, +
4.6e-109FFCP PHASE1:Hg19::chr19:719510..719520,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr19:719510..719520, +
4.6e-109FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_fc5bdd5c406b7fef78f66cccaca3f573p@chr17:19390211..19390223, +
4.01e-107FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9ap17@GNAL
4.01e-107FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_96971685d46c45cd9e21e0cf05fa2a9ap17@GNAL
1.41e-106FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9ap@chr21:43917191..43917207, -
1.41e-106FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_ff842847903ef1bdac1f16d7f71ffd9ap@chr21:43917191..43917207, -
3.33e-98FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4p10@PTPN5
3.33e-98FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_ff05fdecc10a0831f767d47b6c3e34d4p10@PTPN5
1.43e-97FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22cp@chr13:98995923..98995941, +
1.43e-97FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_dca22e73be6ec84997d3e3fade24f22cp@chr13:98995923..98995941, +
4.08e-91FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr10:97261901..97261919, -
4.08e-91FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_0ef7d5d2df23c7e3c03af93fe7a37758p@chr10:97261901..97261919, -
4.91e-91FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4accp1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4accp14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_152f121951bc63186e1c9002ebbe4accp1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4accp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4accp8@ANO3
4.91e-91FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_152f121951bc63186e1c9002ebbe4accp14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_152f121951bc63186e1c9002ebbe4accp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_152f121951bc63186e1c9002ebbe4accp8@ANO3
1.7e-89FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694bp7@PTPN5
1.7e-89FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694bp1@GPR52
1.7e-89FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_e09e07564b7f70eb8ca42f8df975694bp1@GPR52
1.7e-89FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_e09e07564b7f70eb8ca42f8df975694bp7@PTPN5
2.51e-89FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4p5@GPR88
2.51e-89FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_57e5b15b54f08b5b3293155793e6fbe4p5@GPR88
2.86e-89FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984fp14@PPP1CA
2.86e-89FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_f8585fec163d767f7fcbba8264df984fp14@PPP1CA
4.81e-88FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3p3@PTPN5
4.81e-88FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_bdc200995b0c0da9b83552dd8e1380c3p3@PTPN5
1.33e-87FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7p@chr17:19390234..19390251, +
1.33e-87FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_ce0855f619f3fd4d36b127435d9f12a7p@chr17:19390234..19390251, +
1.37e-87FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958p1@GNRH1
1.37e-87FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958p20@WIPF3
1.37e-87FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_200b5a0310c3309103abd9bd3fb87958p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_200b5a0310c3309103abd9bd3fb87958p1@GNRH1
1.37e-87FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_200b5a0310c3309103abd9bd3fb87958p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958p@chr8:19799565..19799589, -
1.37e-87FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_200b5a0310c3309103abd9bd3fb87958p@chr8:19799565..19799589, -
1.37e-87FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_200b5a0310c3309103abd9bd3fb87958p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_200b5a0310c3309103abd9bd3fb87958p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_200b5a0310c3309103abd9bd3fb87958p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_200b5a0310c3309103abd9bd3fb87958p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_200b5a0310c3309103abd9bd3fb87958p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_200b5a0310c3309103abd9bd3fb87958p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_200b5a0310c3309103abd9bd3fb87958p20@WIPF3
1.79e-87FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969fp5@ANO3
1.79e-87FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969fp@chr10:73313437..73313451, -
1.79e-87FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_c44f41648eb2fa87b6e418f7686d969fp@chr10:73313437..73313451, -
1.79e-87FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_c44f41648eb2fa87b6e418f7686d969fp5@ANO3
2.08e-87FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387p@chr3:16851273..16851310, +
2.08e-87FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_2fee23c448ecb1b54ed0ccc362c51387p@chr3:16851273..16851310, +
2.42e-87FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22p@chr7:67899920..67899958, -
2.42e-87FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_ee8617d746c69f416877b0cd53aece22p@chr7:67899920..67899958, -
2.8e-87FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64ccp@chr9:95569585..95569596, +
2.8e-87FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_d1a3835ecba172f4f30efab1122c64ccp@chr9:95569585..95569596, +
4.39e-83FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10p12@GNAL
4.39e-83FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_221982d148ab154064bedc04849eea10p12@GNAL
3.09e-79FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725p5@BTBD10
3.09e-79FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_1e633958dd1fd8a6937cbc06cb964725p5@BTBD10
5.29e-79FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32p@chr6:166076645..166076657, -
5.29e-79FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_8a473f5433ef39e818c0a95754ff5a32p@chr6:166076645..166076657, -
6.06e-79FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749p2@ENST00000413244
6.06e-79FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749p6@PTPN5
6.06e-79FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_8be7f06153ec6da667f8d2b45b071749p2@ENST00000413244
6.06e-79FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_8be7f06153ec6da667f8d2b45b071749p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_8be7f06153ec6da667f8d2b45b071749p6@PTPN5
6.93e-79FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556p@chr19:19640188..19640201, +
6.93e-79FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_15d7344995935eb80ba0eb576a3cc556p@chr19:19640188..19640201, +

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