Personal tools

FF:10432-106D9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005118
|DRA_sample_Accession=CAGE@SAMD00005118
|accession_numbers=CAGE;DRX007833;DRR008705;DRZ000130;DRZ001515
|accession_numbers=CAGE;DRX007833;DRR008705;DRZ000130;DRZ001515;DRZ011480;DRZ012865
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003928,UBERON:0010317,UBERON:0002294,UBERON:0001173,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
Line 53: Line 53:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10432
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10432
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10432
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10432
|name=bile duct carcinoma cell line:HuCCT1
|name=bile duct carcinoma cell line:HuCCT1
|namespace=FANTOM5
|namespace=FANTOM5
Line 62: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.117631219077203,0,0.0186870206110147,0,0,-0.0269473141930886,0.278452578915161,-0.27483329820609,-0.263716539965927,0,0,0,0.0373740412220293,0,0,0,0,0,0,0.103668642383842,0,0,-0.115948969126398,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.161170804470572,0,-0.143719705429807,0,0,0,0,0,0,0,0,0.676424948294299,0,0,0,0,0,-0.0283391729260215,0,-0.0969923612426051,0,0,0.0063250151707452,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0.103668642383842,0,0,0,0,0.0358925453903706,0,0,0,0,0,-0.115235529529799,0,0,0,-0.0210727855897958,-0.0619289416312425,0,0,0,0.0373740412220293,0.159358838092028,-0.11979018018988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277071339948174,0,0,0,-0.175029234118318,-0.518623942255049,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0.117631219077203,0,0.0186870206110147,0,0,-0.0269473141930886,0.278452578915161,-0.27483329820609,-0.263716539965927,0,0,0,0.0373740412220293,0,0,0,0,0,0,0.103668642383842,0,0,-0.115948969126398,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.161170804470572,0,-0.143719705429807,0,0,0,0,0,0,0,0,0.676424948294299,0,0,0,0,0,-0.0283391729260215,0,-0.0969923612426051,0,0,0.0063250151707452,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0.103668642383842,0,0,0,0,0.0358925453903706,0,0,0,0,0,-0.115235529529799,0,0,0,-0.0210727855897958,-0.0619289416312425,0,0,0,0.0373740412220293,0.159358838092028,-0.11979018018988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277071339948174,0,0,0,-0.175029234118318,-0.518623942255049,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.159358838092028,0,0.0373740412220293,0.0717850907807411,0,0,0,0,0,0,0,0,-0.0119164371311593,0,0.286564104756126,0.0684268583409123,0,0,-0.0905925341120901,0,0.133370715893297,0,0,0,0,0,0,0,0.701285195565308,0,0.0829581643039826,0,0,0,0,0.040112651875635,-0.305472230898407,0,0.00261899741739618,-0.0309702198553389,0,0,0,0,0.0777666459216552,0,-0.0490943930129995,-0.0109350775426762,0,-0.298687496416957,-0.00608003688513953,0,0,0,-0.531730944768717,0.55236181323215,0,0,0.30575058592638,-0.100764216325373,0,0,-0.391044581551635,0,-0.230699347326492,-0.0417527212858557,0,0.0651824826345123,0,0,0,0,0,0.0373740412220293,0,0,0,0.0186870206110147,0,-0.0574934668214365,0.159721225235833,0,0.0373740412220293,0.257394189329734,0,-0.0117847772980824,0,0.00565916124120605,0.461861545861898,0.00254790780156289,-0.087311854675869,-0.0354471312557175,0,-0.302389727009913,-0.0306821910608225,-0.146623745105715,0.0930984386779262,-0.147401849371139,0.227926593009663,0,-0.121247422832542,-0.450155549674417,0,-0.0881455020974204,-0.0115577724327389,-0.374020749639882,0.0897932975600804,0.0373740412220293,0.499252629661572,0.0373740412220293,0.180253224491939,0,0,-0.136360597342962,0.099692492910171,-0.125824175667248,-0.213891576632847,-0.089886119729307,0.0355506501817011,-0.0395325284566706,0.00304573711622136,0,-0.0947314010419725,0,0,0,-0.071776034120076,0.00734481286278077,0.00173946216327592,0,-0.0514092095627142,-0.0683442610773682,0.0373740412220293,-0.259279653180111,-0.217768897786402,0,-0.0071097791111302,0.00958269734812067,0,0,0,0,0,0.067857214328549,-0.0790099530173503,-0.232855561555545,0,-0.119719178383476,0.0373740412220293,0.0913222458648592,0,-0.0383010401816277,0.076281817304356,0,-0.292633804596236,0,0.157977424086343,0.0639884545600207,0.0469513045253814,-0.123857883262485,-0.0210727855897958,0.0164179339655376,-0.221670829835524,0.059791459964819,0.0167037684262717,-0.0869336553713841,-0.0881268324752877,-0.0669274668038924,0.142412623634864,0.214263335759295,0,-0.175036910648922,0.0211090661741504,0.00287177911732783,0,0.0975893123125648,0,-0.0682591528386608,0.233554389838651,-0.335620732196844,0.290956529576084,0,0.0287612292469281,-0.401116187257995,0,0,-0.0310819351287434,0.588359928219533,0.148169838794613,0.256463693454228,-0.17427638664256,0.299394329570543,0,-0.201720230170124,0,0,-0.104644287321205,-0.131807395380547,0,-0.0814801447217458,-0.162453463364451,-0.104963411533723,-0.0785970322129047,0.0717850907807411,0.0373740412220293,0.195115058598715,0,0,0.187328856152073,-0.0395379881524238,-0.159301133945817,-0.181541250706015,-0.0480634865585218,0.573427261570697,0,0,-0.0738591235813335,0,-0.126322869528492,0,0.0717850907807411,0.0286425350867845,0.118634325164272,0,0,0.0373740412220293,0,0,0,0,0,0.00097224382541894,0,0,-0.507649893656142,0.118960635943588,0,0.0717850907807411,0,0,0,0,0.211942000864384,0.0544492780938144,0,0,-0.838506246122466,-0.0248045989967255,0.213099663763174,0.149268461064626,0,0.0545795660013852,0,0.154979363510514,0.095300360034529,0.0373740412220293,0.103399731656773,0.0373740412220293,0,0,0,-0.0861409897892114,0,0,0.0373740412220293,0.0186870206110147,-0.057730457053664,-0.248991014963675,0,0,0,-0.27695440160179,0,0,0.0373740412220293,0,0.0589443348335674,0,0,-0.0213774022201232,0,-0.0211001667647683,-0.0815818795468414,0,-0.0195879584593855,-0.0577061626253053,0.786415755899742,0,0.0717850907807411,-0.157678489406045,0,0.0358925453903706,0.135481562835321,-0.044996181743637,0.0373740412220293,0.0193251855358486,0,0,0,0,0,0,0.546335811108378,0.0186870206110147,0,0,0,0,0.0373740412220293,0,0,0,0,0.103668642383842,-0.053138507715311,-0.054850015436481,0.253673686982619,0,0,0,0,0.0373740412220293,0,0.0636208435033885,0.127945760009124,0,0,0.0229165920621804,0,0,0.0373740412220293,0,0,0.155454202653272,0,0,0,0,0,-0.0969923612426051,0,0.0373740412220293,0,0.235262438154405,-0.527433079931855,0,0,-0.173693489809672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0639788203666597,-0.610018106557498,0,0.0373740412220293,0,0,0,0.278452578915161,0,-0.27483329820609,0,0,0,0,-0.010215731325135,0.0373740412220293,0,0,0.35568580522366,0,-0.0269473141930886,0,0.0373740412220293,0,0,0,0.0374113085197106,0.0936489532010535,0.0186870206110147,0,0,0,0,0,0,0,0,0,0.0936489532010535,0.0186870206110147,0,0,0.193054235769812,0,-0.151450634992834,0,0,0,-0.0163442265089085,0,0,0,0,0,0,0.0045521213618435,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128697094664867,-0.0161710231940737,0,0,0,0,0.0373740412220293,0,0,-0.0979578962680575,0,0.0186870206110147,0.0552379503814084,0,0,0.00268711173848176,0,0,0,-0.00228708185970949,-0.0821176175665997,-0.032431672435483,0,0,0.0373740412220293,-0.054385572482455,0,0,-0.0482120461578062,0,0.168485050735504,0,0,0,0,0,0,0,0,0.257394189329734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.115948969126398,0,0,0,0,0,0,0,0,0,0,0,0,0.0666853579466485,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717850907807411,0.0358925453903706,0,0,0,0,0,0,-0.0340113632754165,0.103668642383842,0,0,0,0,0,0,0.187297906402107,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,-0.0800184682686384,0,0,0,-0.109417587273202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133370715893297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.244258062479823,0,0,0,0,0,0,0,0,0.161170804470572,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.338562041651328,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.432568252248266,-0.0515359524114825,0,0,0.103668642383842,0,0,0,0.0056050516143024,0,0.0186870206110147,0,0,0,0,-0.253610608288505,0,0,-0.157694167575252,0,0,0,0,0,0,0,0,0,0,0,0,-0.023946137928097,0,0,0,0,0,0,0,0,0,0,0.138867864176439,0,0,0,0,0,0,0,0,0.0717850907807411,0,1.21398203241216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.179914271847186,-0.518623942255049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936489532010535,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0.0480977405008507,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,-0.0110099017616611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0.0358925453903706,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298536922129253,0,0,0,0,0,0,0,0,0,0,0.958475563075333,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0.268351630641478,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0.0717850907807411,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0,0,0,0,0,0.554142679896347,0,0.0186870206110147,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0364743170409396,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0165979489442957,0.0196406442803988,0,0,0.0186870206110147,0,0,0,0,-0.0853219557749716,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.056845618717724,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,-0.0130295654373685,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0423679574429487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0063250151707452,0,0.051834321191921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0358925453903706,0,0,0,0,0,0,0,0,0,0,0,0.051834321191921,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0312509619105718,0.0358925453903706,0,0,0,0,0,0,0,0,0,0.0254352664188415,0.0186870206110147,0,0,0,0.0373740412220293,0,0,0.0805714185265085,0,0,0,0,0,0,0,0,0,0,-0.0173290501655621,0,0,-0.00491342725508659,0,-0.187160695646734,-0.00516106832121338,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0.128697094664867,0,0,0.0635923946593106,0.0373740412220293,0,0.0574207217163397,0,0,0,0,0,0,0.187297906402107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0927741889208585,0,-0.0182066456407319,-0.0793413310222879,0,0.0373740412220293,-0.164462584403241,0,0,-0.0477396614475454,0,0,0.0602695430641061,0.157875826503733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0.0717850907807411,0,-0.0194849049405698,-0.0821777291924618,0,-0.143573816196019,0,0,0.0830654938182846,0,0,0,0.115982593490797
|repeat_enrich_byname=0,0,0,0,0.159358838092028,0,0.0373740412220293,0.0717850907807411,0,0,0,0,0,0,0,0,-0.0119164371311593,0,0.286564104756126,0.0684268583409123,0,0,-0.0905925341120901,0,0.133370715893297,0,0,0,0,0,0,0,0.701285195565308,0,0.0829581643039826,0,0,0,0,0.040112651875635,-0.305472230898407,0,0.00261899741739618,-0.0309702198553389,0,0,0,0,0.0777666459216552,0,-0.0490943930129995,-0.0109350775426762,0,-0.298687496416957,-0.00608003688513953,0,0,0,-0.531730944768717,0.55236181323215,0,0,0.30575058592638,-0.100764216325373,0,0,-0.391044581551635,0,-0.230699347326492,-0.0417527212858557,0,0.0651824826345123,0,0,0,0,0,0.0373740412220293,0,0,0,0.0186870206110147,0,-0.0574934668214365,0.159721225235833,0,0.0373740412220293,0.257394189329734,0,-0.0117847772980824,0,0.00565916124120605,0.461861545861898,0.00254790780156289,-0.087311854675869,-0.0354471312557175,0,-0.302389727009913,-0.0306821910608225,-0.146623745105715,0.0930984386779262,-0.147401849371139,0.227926593009663,0,-0.121247422832542,-0.450155549674417,0,-0.0881455020974204,-0.0115577724327389,-0.374020749639882,0.0897932975600804,0.0373740412220293,0.499252629661572,0.0373740412220293,0.180253224491939,0,0,-0.136360597342962,0.099692492910171,-0.125824175667248,-0.213891576632847,-0.089886119729307,0.0355506501817011,-0.0395325284566706,0.00304573711622136,0,-0.0947314010419725,0,0,0,-0.071776034120076,0.00734481286278077,0.00173946216327592,0,-0.0514092095627142,-0.0683442610773682,0.0373740412220293,-0.259279653180111,-0.217768897786402,0,-0.0071097791111302,0.00958269734812067,0,0,0,0,0,0.067857214328549,-0.0790099530173503,-0.232855561555545,0,-0.119719178383476,0.0373740412220293,0.0913222458648592,0,-0.0383010401816277,0.076281817304356,0,-0.292633804596236,0,0.157977424086343,0.0639884545600207,0.0469513045253814,-0.123857883262485,-0.0210727855897958,0.0164179339655376,-0.221670829835524,0.059791459964819,0.0167037684262717,-0.0869336553713841,-0.0881268324752877,-0.0669274668038924,0.142412623634864,0.214263335759295,0,-0.175036910648922,0.0211090661741504,0.00287177911732783,0,0.0975893123125648,0,-0.0682591528386608,0.233554389838651,-0.335620732196844,0.290956529576084,0,0.0287612292469281,-0.401116187257995,0,0,-0.0310819351287434,0.588359928219533,0.148169838794613,0.256463693454228,-0.17427638664256,0.299394329570543,0,-0.201720230170124,0,0,-0.104644287321205,-0.131807395380547,0,-0.0814801447217458,-0.162453463364451,-0.104963411533723,-0.0785970322129047,0.0717850907807411,0.0373740412220293,0.195115058598715,0,0,0.187328856152073,-0.0395379881524238,-0.159301133945817,-0.181541250706015,-0.0480634865585218,0.573427261570697,0,0,-0.0738591235813335,0,-0.126322869528492,0,0.0717850907807411,0.0286425350867845,0.118634325164272,0,0,0.0373740412220293,0,0,0,0,0,0.00097224382541894,0,0,-0.507649893656142,0.118960635943588,0,0.0717850907807411,0,0,0,0,0.211942000864384,0.0544492780938144,0,0,-0.838506246122466,-0.0248045989967255,0.213099663763174,0.149268461064626,0,0.0545795660013852,0,0.154979363510514,0.095300360034529,0.0373740412220293,0.103399731656773,0.0373740412220293,0,0,0,-0.0861409897892114,0,0,0.0373740412220293,0.0186870206110147,-0.057730457053664,-0.248991014963675,0,0,0,-0.27695440160179,0,0,0.0373740412220293,0,0.0589443348335674,0,0,-0.0213774022201232,0,-0.0211001667647683,-0.0815818795468414,0,-0.0195879584593855,-0.0577061626253053,0.786415755899742,0,0.0717850907807411,-0.157678489406045,0,0.0358925453903706,0.135481562835321,-0.044996181743637,0.0373740412220293,0.0193251855358486,0,0,0,0,0,0,0.546335811108378,0.0186870206110147,0,0,0,0,0.0373740412220293,0,0,0,0,0.103668642383842,-0.053138507715311,-0.054850015436481,0.253673686982619,0,0,0,0,0.0373740412220293,0,0.0636208435033885,0.127945760009124,0,0,0.0229165920621804,0,0,0.0373740412220293,0,0,0.155454202653272,0,0,0,0,0,-0.0969923612426051,0,0.0373740412220293,0,0.235262438154405,-0.527433079931855,0,0,-0.173693489809672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0639788203666597,-0.610018106557498,0,0.0373740412220293,0,0,0,0.278452578915161,0,-0.27483329820609,0,0,0,0,-0.010215731325135,0.0373740412220293,0,0,0.35568580522366,0,-0.0269473141930886,0,0.0373740412220293,0,0,0,0.0374113085197106,0.0936489532010535,0.0186870206110147,0,0,0,0,0,0,0,0,0,0.0936489532010535,0.0186870206110147,0,0,0.193054235769812,0,-0.151450634992834,0,0,0,-0.0163442265089085,0,0,0,0,0,0,0.0045521213618435,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128697094664867,-0.0161710231940737,0,0,0,0,0.0373740412220293,0,0,-0.0979578962680575,0,0.0186870206110147,0.0552379503814084,0,0,0.00268711173848176,0,0,0,-0.00228708185970949,-0.0821176175665997,-0.032431672435483,0,0,0.0373740412220293,-0.054385572482455,0,0,-0.0482120461578062,0,0.168485050735504,0,0,0,0,0,0,0,0,0.257394189329734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.115948969126398,0,0,0,0,0,0,0,0,0,0,0,0,0.0666853579466485,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717850907807411,0.0358925453903706,0,0,0,0,0,0,-0.0340113632754165,0.103668642383842,0,0,0,0,0,0,0.187297906402107,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,-0.0800184682686384,0,0,0,-0.109417587273202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133370715893297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.244258062479823,0,0,0,0,0,0,0,0,0.161170804470572,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.338562041651328,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.432568252248266,-0.0515359524114825,0,0,0.103668642383842,0,0,0,0.0056050516143024,0,0.0186870206110147,0,0,0,0,-0.253610608288505,0,0,-0.157694167575252,0,0,0,0,0,0,0,0,0,0,0,0,-0.023946137928097,0,0,0,0,0,0,0,0,0,0,0.138867864176439,0,0,0,0,0,0,0,0,0.0717850907807411,0,1.21398203241216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.179914271847186,-0.518623942255049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936489532010535,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0.0480977405008507,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,-0.0110099017616611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0.0358925453903706,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298536922129253,0,0,0,0,0,0,0,0,0,0,0.958475563075333,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0.268351630641478,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0.0717850907807411,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0,0,0,0,0,0.554142679896347,0,0.0186870206110147,0,0,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0364743170409396,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0165979489442957,0.0196406442803988,0,0,0.0186870206110147,0,0,0,0,-0.0853219557749716,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.056845618717724,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,-0.0130295654373685,0,0,0.0373740412220293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0423679574429487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0063250151707452,0,0.051834321191921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0373740412220293,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0358925453903706,0,0,0,0,0,0,0,0,0,0,0,0.051834321191921,0,0,0,0,0,0,0,0,0,0,0.0186870206110147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0312509619105718,0.0358925453903706,0,0,0,0,0,0,0,0,0,0.0254352664188415,0.0186870206110147,0,0,0,0.0373740412220293,0,0,0.0805714185265085,0,0,0,0,0,0,0,0,0,0,-0.0173290501655621,0,0,-0.00491342725508659,0,-0.187160695646734,-0.00516106832121338,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0.128697094664867,0,0,0.0635923946593106,0.0373740412220293,0,0.0574207217163397,0,0,0,0,0,0,0.187297906402107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0927741889208585,0,-0.0182066456407319,-0.0793413310222879,0,0.0373740412220293,-0.164462584403241,0,0,-0.0477396614475454,0,0,0.0602695430641061,0.157875826503733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103668642383842,0.0717850907807411,0,-0.0194849049405698,-0.0821777291924618,0,-0.143573816196019,0,0,0.0830654938182846,0,0,0,0.115982593490797
Line 100: Line 100:
|top_motifs=ZEB1:1.94414767736;SNAI1..3:1.84274580312;TBX4,5:1.52011256842;PPARG:1.3852545871;PITX1..3:1.32349339141;bHLH_family:1.29151362753;FOXA2:1.24138866202;E2F1..5:1.21053883561;ELK1,4_GABP{A,B1}:1.13057229559;MYB:1.12604259407;FOX{I1,J2}:1.0538006006;FOXD3:1.01373558874;ADNP_IRX_SIX_ZHX:0.945583154196;PAX8:0.935500684032;TFDP1:0.91783576886;TEAD1:0.910022058835;LEF1_TCF7_TCF7L1,2:0.890039038454;ARID5B:0.851716648914;NFY{A,B,C}:0.847396520552;MYOD1:0.812162514367;FOXQ1:0.654012018128;XCPE1{core}:0.649138417058;ZNF148:0.640732956986;NKX3-2:0.623782386287;ESRRA:0.593242503937;AHR_ARNT_ARNT2:0.537396943137;NKX2-2,8:0.473731768301;ELF1,2,4:0.458748155394;FOS_FOS{B,L1}_JUN{B,D}:0.451592389127;BACH2:0.446951437535;POU1F1:0.4290993361;CDC5L:0.424143341526;FOXP1:0.421983627735;VSX1,2:0.413258993819;ONECUT1,2:0.393824800496;HNF1A:0.388562131887;POU2F1..3:0.375623723151;CRX:0.357420352996;NKX2-3_NKX2-5:0.350083719939;OCT4_SOX2{dimer}:0.343058504901;SP1:0.339351773149;ZNF143:0.330542769535;NFE2:0.291407831027;IRF7:0.251794940157;HMGA1,2:0.236405127133;NR6A1:0.228642111694;NRF1:0.213832030588;LHX3,4:0.204040179334;SOX{8,9,10}:0.202612024118;LMO2:0.202597638235;BREu{core}:0.197682067802;HES1:0.188659586083;FOXN1:0.177305753313;FOXM1:0.111200547589;PAX5:0.101249339159;EN1,2:0.10020825534;NFKB1_REL_RELA:0.0977401362549;TFCP2:0.0918904861631;NR1H4:0.0845048930236;FOSL2:0.0839816727418;SOX2:0.0670730164378;POU5F1:0.0457315092244;RBPJ:0.0444608276227;ATF5_CREB3:0.0383709139343;MTF1:0.0295944811179;BPTF:0.0248572814224;IKZF1:0.01932829163;YY1:0.0187833154373;GATA6:0.0176717157234;HAND1,2:0.00409667268333;TEF:-0.00621293810979;PAX2:-0.0157109241114;EP300:-0.015899889166;HNF4A_NR2F1,2:-0.0172711529513;GFI1:-0.0199380989269;STAT5{A,B}:-0.0324361885765;HOX{A6,A7,B6,B7}:-0.0377249289065;HOX{A5,B5}:-0.0394633878003;HLF:-0.0529299431877;GLI1..3:-0.0538241729968;IRF1,2:-0.0882110904402;GCM1,2:-0.0953635315672;NKX6-1,2:-0.0974022395853;NFATC1..3:-0.108854587635;FOX{D1,D2}:-0.119149069968;HBP1_HMGB_SSRP1_UBTF:-0.131945947276;PDX1:-0.135684503106;MAZ:-0.137527474106;NANOG:-0.144918672763;ZFP161:-0.145158427668;SOX17:-0.154526933526;TFAP2B:-0.162685897746;ATF4:-0.170796003513;TP53:-0.193012449662;FOXO1,3,4:-0.193494369355;GTF2A1,2:-0.197491092856;TLX1..3_NFIC{dimer}:-0.199787761644;POU3F1..4:-0.216636547702;SPIB:-0.223847925497;ETS1,2:-0.233696248032;CEBPA,B_DDIT3:-0.23706368926;DBP:-0.240721445612;STAT2,4,6:-0.241340767392;MEF2{A,B,C,D}:-0.254146598181;HMX1:-0.28125050337;TBP:-0.283360935849;TFAP2{A,C}:-0.289998274544;ZBTB16:-0.293151423704;HIC1:-0.302441377118;ATF2:-0.303376644306;NFE2L2:-0.306547857752;PRDM1:-0.307223913597;MTE{core}:-0.312376431451;RFX1:-0.31387344055;NKX2-1,4:-0.314512010857;MED-1{core}:-0.314712202287;RUNX1..3:-0.333560515439;NR5A1,2:-0.348172367775;ZBTB6:-0.35673714233;CUX2:-0.362238193108;EGR1..3:-0.362671541886;XBP1:-0.393041753757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.395277301106;JUN:-0.408190068047;FOXL1:-0.409782184425;TAL1_TCF{3,4,12}:-0.41144193298;SPI1:-0.413261737438;GZF1:-0.416493974096;RORA:-0.419501888889;NHLH1,2:-0.420253032418;ALX4:-0.424828270784;GFI1B:-0.462119287451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483870911719;EBF1:-0.487713537761;NR3C1:-0.487981095068;SRF:-0.489531929398;ZNF423:-0.491072322689;TOPORS:-0.509794113764;PBX1:-0.514621182698;IKZF2:-0.515109785301;AIRE:-0.521409513749;HSF1,2:-0.5230025728;EVI1:-0.529946516569;ZIC1..3:-0.530412144191;AR:-0.533373046885;RREB1:-0.533532145853;UFEwm:-0.542156022859;KLF4:-0.544816528842;RFX2..5_RFXANK_RFXAP:-0.54829529235;PRRX1,2:-0.549028151124;CREB1:-0.578603194853;NKX3-1:-0.593895405087;MYBL2:-0.609370752571;REST:-0.611496079019;ALX1:-0.628254348203;HIF1A:-0.629827533326;NFE2L1:-0.631549143252;DMAP1_NCOR{1,2}_SMARC:-0.63157242737;GTF2I:-0.6325784025;PATZ1:-0.65005575693;TLX2:-0.651452931728;HOXA9_MEIS1:-0.655861875101;NFIL3:-0.665704547193;MZF1:-0.668186150437;FOX{F1,F2,J1}:-0.687200653578;SREBF1,2:-0.736236624144;POU6F1:-0.746046624442;ATF6:-0.759751316301;CDX1,2,4:-0.763402487785;SPZ1:-0.764654691324;RXRA_VDR{dimer}:-0.781677345357;PAX3,7:-0.793520344212;PAX6:-0.80658610675;FOXP3:-0.819616115601;PAX4:-0.822177565515;ESR1:-0.827064041292;NFIX:-0.884562132034;MAFB:-0.898483187505;ZNF238:-0.903612464547;HOX{A4,D4}:-0.938655238831;SOX5:-0.956266913577;GATA4:-0.967426437992;TGIF1:-0.976201827329;MYFfamily:-1.00152335522;PAX1,9:-1.14467678765;T:-1.15114214774;NANOG{mouse}:-1.15175271819;ZNF384:-1.15215720502;RXR{A,B,G}:-1.19764577535;TFAP4:-1.20633217133;SMAD1..7,9:-1.49934560507;STAT1,3:-1.61188029896
|top_motifs=ZEB1:1.94414767736;SNAI1..3:1.84274580312;TBX4,5:1.52011256842;PPARG:1.3852545871;PITX1..3:1.32349339141;bHLH_family:1.29151362753;FOXA2:1.24138866202;E2F1..5:1.21053883561;ELK1,4_GABP{A,B1}:1.13057229559;MYB:1.12604259407;FOX{I1,J2}:1.0538006006;FOXD3:1.01373558874;ADNP_IRX_SIX_ZHX:0.945583154196;PAX8:0.935500684032;TFDP1:0.91783576886;TEAD1:0.910022058835;LEF1_TCF7_TCF7L1,2:0.890039038454;ARID5B:0.851716648914;NFY{A,B,C}:0.847396520552;MYOD1:0.812162514367;FOXQ1:0.654012018128;XCPE1{core}:0.649138417058;ZNF148:0.640732956986;NKX3-2:0.623782386287;ESRRA:0.593242503937;AHR_ARNT_ARNT2:0.537396943137;NKX2-2,8:0.473731768301;ELF1,2,4:0.458748155394;FOS_FOS{B,L1}_JUN{B,D}:0.451592389127;BACH2:0.446951437535;POU1F1:0.4290993361;CDC5L:0.424143341526;FOXP1:0.421983627735;VSX1,2:0.413258993819;ONECUT1,2:0.393824800496;HNF1A:0.388562131887;POU2F1..3:0.375623723151;CRX:0.357420352996;NKX2-3_NKX2-5:0.350083719939;OCT4_SOX2{dimer}:0.343058504901;SP1:0.339351773149;ZNF143:0.330542769535;NFE2:0.291407831027;IRF7:0.251794940157;HMGA1,2:0.236405127133;NR6A1:0.228642111694;NRF1:0.213832030588;LHX3,4:0.204040179334;SOX{8,9,10}:0.202612024118;LMO2:0.202597638235;BREu{core}:0.197682067802;HES1:0.188659586083;FOXN1:0.177305753313;FOXM1:0.111200547589;PAX5:0.101249339159;EN1,2:0.10020825534;NFKB1_REL_RELA:0.0977401362549;TFCP2:0.0918904861631;NR1H4:0.0845048930236;FOSL2:0.0839816727418;SOX2:0.0670730164378;POU5F1:0.0457315092244;RBPJ:0.0444608276227;ATF5_CREB3:0.0383709139343;MTF1:0.0295944811179;BPTF:0.0248572814224;IKZF1:0.01932829163;YY1:0.0187833154373;GATA6:0.0176717157234;HAND1,2:0.00409667268333;TEF:-0.00621293810979;PAX2:-0.0157109241114;EP300:-0.015899889166;HNF4A_NR2F1,2:-0.0172711529513;GFI1:-0.0199380989269;STAT5{A,B}:-0.0324361885765;HOX{A6,A7,B6,B7}:-0.0377249289065;HOX{A5,B5}:-0.0394633878003;HLF:-0.0529299431877;GLI1..3:-0.0538241729968;IRF1,2:-0.0882110904402;GCM1,2:-0.0953635315672;NKX6-1,2:-0.0974022395853;NFATC1..3:-0.108854587635;FOX{D1,D2}:-0.119149069968;HBP1_HMGB_SSRP1_UBTF:-0.131945947276;PDX1:-0.135684503106;MAZ:-0.137527474106;NANOG:-0.144918672763;ZFP161:-0.145158427668;SOX17:-0.154526933526;TFAP2B:-0.162685897746;ATF4:-0.170796003513;TP53:-0.193012449662;FOXO1,3,4:-0.193494369355;GTF2A1,2:-0.197491092856;TLX1..3_NFIC{dimer}:-0.199787761644;POU3F1..4:-0.216636547702;SPIB:-0.223847925497;ETS1,2:-0.233696248032;CEBPA,B_DDIT3:-0.23706368926;DBP:-0.240721445612;STAT2,4,6:-0.241340767392;MEF2{A,B,C,D}:-0.254146598181;HMX1:-0.28125050337;TBP:-0.283360935849;TFAP2{A,C}:-0.289998274544;ZBTB16:-0.293151423704;HIC1:-0.302441377118;ATF2:-0.303376644306;NFE2L2:-0.306547857752;PRDM1:-0.307223913597;MTE{core}:-0.312376431451;RFX1:-0.31387344055;NKX2-1,4:-0.314512010857;MED-1{core}:-0.314712202287;RUNX1..3:-0.333560515439;NR5A1,2:-0.348172367775;ZBTB6:-0.35673714233;CUX2:-0.362238193108;EGR1..3:-0.362671541886;XBP1:-0.393041753757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.395277301106;JUN:-0.408190068047;FOXL1:-0.409782184425;TAL1_TCF{3,4,12}:-0.41144193298;SPI1:-0.413261737438;GZF1:-0.416493974096;RORA:-0.419501888889;NHLH1,2:-0.420253032418;ALX4:-0.424828270784;GFI1B:-0.462119287451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483870911719;EBF1:-0.487713537761;NR3C1:-0.487981095068;SRF:-0.489531929398;ZNF423:-0.491072322689;TOPORS:-0.509794113764;PBX1:-0.514621182698;IKZF2:-0.515109785301;AIRE:-0.521409513749;HSF1,2:-0.5230025728;EVI1:-0.529946516569;ZIC1..3:-0.530412144191;AR:-0.533373046885;RREB1:-0.533532145853;UFEwm:-0.542156022859;KLF4:-0.544816528842;RFX2..5_RFXANK_RFXAP:-0.54829529235;PRRX1,2:-0.549028151124;CREB1:-0.578603194853;NKX3-1:-0.593895405087;MYBL2:-0.609370752571;REST:-0.611496079019;ALX1:-0.628254348203;HIF1A:-0.629827533326;NFE2L1:-0.631549143252;DMAP1_NCOR{1,2}_SMARC:-0.63157242737;GTF2I:-0.6325784025;PATZ1:-0.65005575693;TLX2:-0.651452931728;HOXA9_MEIS1:-0.655861875101;NFIL3:-0.665704547193;MZF1:-0.668186150437;FOX{F1,F2,J1}:-0.687200653578;SREBF1,2:-0.736236624144;POU6F1:-0.746046624442;ATF6:-0.759751316301;CDX1,2,4:-0.763402487785;SPZ1:-0.764654691324;RXRA_VDR{dimer}:-0.781677345357;PAX3,7:-0.793520344212;PAX6:-0.80658610675;FOXP3:-0.819616115601;PAX4:-0.822177565515;ESR1:-0.827064041292;NFIX:-0.884562132034;MAFB:-0.898483187505;ZNF238:-0.903612464547;HOX{A4,D4}:-0.938655238831;SOX5:-0.956266913577;GATA4:-0.967426437992;TGIF1:-0.976201827329;MYFfamily:-1.00152335522;PAX1,9:-1.14467678765;T:-1.15114214774;NANOG{mouse}:-1.15175271819;ZNF384:-1.15215720502;RXR{A,B,G}:-1.19764577535;TFAP4:-1.20633217133;SMAD1..7,9:-1.49934560507;STAT1,3:-1.61188029896
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10432-106D9;search_select_hide=table117:FF:10432-106D9
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:bile duct carcinoma cell line:HuCCT1
Species:Human (Homo sapiens)
Library ID:CNhs10750
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebile duct
dev stage56 year old adult
sexunknown
age56
cell typeduct cell, bile duct
cell lineHuCCT1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005118
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10750 CAGE DRX007833 DRR008705
Accession ID Hg19

Library idBAMCTSS
CNhs10750 DRZ000130 DRZ001515
Accession ID Hg38

Library idBAMCTSS
CNhs10750 DRZ011480 DRZ012865
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10750



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10750



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10750


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0002294 (biliary system)
0001173 (biliary tree)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103910 (bile duct cancer cell line sample)
0103911 (HuCCT-1 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)