FFCP PHASE1:Hg19::chr12:48164832..48164844,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10411 | |EntrezGene=10411 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |HGNC=16629 | ||
|TSSclassifier=strong | |||
|UniProt=F8VRX1 | |UniProt=F8VRX1 | ||
|association_with_transcript=-9bp_to_ENST00000397089,ENST00000548919,uc009zks.2_5end | |||
|cluster_id=chr12:48164832..48164844,- | |||
|coexpression_cluster_id=C2207 | |||
|description=CAGE_peak_22_at_RAPGEF3_5end | |||
|id=chr12:48164832..48164844,- | |||
|ontology_enrichment_celltype=CL:0000575!4.39e-12!2 | |||
|ontology_enrichment_celltype_v019=CL:0000575;5.69e-21;2!CL:0000333;3.22e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,4.66e-21,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3193;5.69e-21;2!DOID:962;5.69e-21;2!DOID:1192;1.83e-14;3!DOID:4362;2.63e-09;5!DOID:1115;5.81e-09;20!DOID:169;6.78e-08;6!DOID:1325;6.04e-07;7!DOID:3904;6.04e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,6.96e-21,2;DOID:962,6.96e-21,2;DOID:1192,2.09e-14,3;DOID:4362,2.74e-09,5;DOID:1115,5.93e-09,20;DOID:169,7.25e-08,6;DOID:1325,6.04e-07,7;DOID:3904,6.04e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0000007!8.83e-12!2;UBERON:0001896!1.91e-07!3;UBERON:0005290!1.91e-07!3;UBERON:0010096!1.91e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003714;5.69e-21;2!UBERON:0000964;3.42e-11;4!UBERON:0010409;3.42e-11;4!UBERON:0000013;3.22e-09;5!UBERON:0002410;3.22e-09;5!UBERON:0000002;5.73e-08;6!UBERON:0001560;5.73e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,6.96e-21,2;UBERON:0000964,3.10e-11,4;UBERON:0010409,3.10e-11,4;UBERON:0004348,3.10e-11,4;UBERON:0005427,3.10e-11,4;UBERON:0000013,3.49e-09,5;UBERON:0002410,3.49e-09,5;UBERON:0000002,5.92e-08,6;UBERON:0001560,5.92e-08,6 | |||
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|short_description=p22@RAPGEF3 | |||
}} | }} |
Latest revision as of 13:10, 18 September 2015
Short description: | p22@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_RAPGEF3_5end |
Coexpression cluster: | C2207_rhabdomyosarcoma_Corneal_bronchogenic_kidney_cervical_neuroepithelioma_neuroectodermal |
Association with transcript: | -9bp_to_ENST00000397089, ENST00000548919, uc009zks.2_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | F8VRX1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 4.66e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
neural tissue | 6.96e-21 | 2 |
cornea | 3.10e-11 | 4 |
eye surface | 3.10e-11 | 4 |
optic eminence | 3.10e-11 | 4 |
corneal primordium | 3.10e-11 | 4 |
sympathetic nervous system | 3.49e-09 | 5 |
autonomic nervous system | 3.49e-09 | 5 |
uterine cervix | 5.92e-08 | 6 |
neck of organ | 5.92e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 6.96e-21 | 2 |
neurofibroma | 6.96e-21 | 2 |
peripheral nervous system neoplasm | 2.09e-14 | 3 |
cervical cancer | 2.74e-09 | 5 |
sarcoma | 5.93e-09 | 20 |
neuroendocrine tumor | 7.25e-08 | 6 |
bronchus cancer | 6.04e-07 | 7 |
bronchogenic carcinoma | 6.04e-07 | 7 |