FFCP PHASE1:Hg19::chr12:56359816..56359833,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:56359816..56359833,- to FFCP PHASE1:Hg19::chr12:56359816..56359833,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000550464,ENST00000550590_5end | |||
|cluster_id=chr12:56359816..56359833,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_1_at_PMEL_5end | |||
|id=chr12:56359816..56359833,- | |||
|ontology_enrichment_celltype=CL:0000147!1.16e-13!14;CL:0000148!1.04e-10!10;CL:0000541!1.04e-10!10;CL:0000325!3.57e-08!39;CL:0000075!1.97e-07!27;CL:0000710!3.28e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.14e-33;14!CL:0000148;1.39e-28;10!CL:0002322;1.37e-14;5!CL:0000710;4.56e-13;20!CL:0000075;9.09e-13;27!CL:0000149;2.10e-12;4!CL:0002077;3.52e-10;34!CL:0002567;7.26e-10;3!CL:0002586;1.26e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.15e-33,14;CL:0000148,1.40e-28,10;CL:0000541,1.40e-28,10;CL:0002322,1.36e-14,5;CL:0000710,4.57e-13,20;CL:0000075,9.97e-13,27;CL:0000149,2.10e-12,4;CL:0002077,3.31e-11,34;CL:0002567,7.38e-10,3;CL:0002586,1.26e-09,3;CL:0000221,8.91e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006241;8.78e-08;3!UBERON:0003057;8.78e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;4.48e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,4.48e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;7.95e-10;5!UBERON:0005388;7.95e-10;5!UBERON:0001802;7.95e-10;5!UBERON:0001781;1.26e-09;3!UBERON:0001782;1.26e-09;3!UBERON:0002240;8.78e-08;3!UBERON:0005174;8.78e-08;3!UBERON:0001137;8.78e-08;3!UBERON:0002104;3.42e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.59e-12,6;UBERON:0005388,4.59e-12,6;UBERON:0001802,4.59e-12,6;UBERON:0001781,6.75e-12,4;UBERON:0001782,1.26e-09,3;UBERON:0005424,1.26e-09,3;UBERON:0002240,6.60e-08,3;UBERON:0005174,6.60e-08,3;UBERON:0001137,6.60e-08,3;UBERON:0000970,3.32e-07,21;UBERON:0002104,3.32e-07,21 | |||
|phase1_expression=5.81370813665781,1.49870366723688,0.704772020479856,1.0007329835313,2.68176656656373,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.247532705920093,0.662794751455832,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.136874425072884,0,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,4.25439401055856,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0.28769239232215,0,0.236482229888585,0.344745680736619,0,0,0,0.272906150057846,0.674170453335254,0,0,1.91801137739712,0,0,0,0,0,0,0.251248665256743,0,0.65156653411535,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.661743720148475,0.221729397462564,0.263504357079378,0.261958150995425,0.364295288292542,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.488124115096339,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0.872188104285069,0,0.12663051166458,0,0.860509862246441,0,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0.368502951935304,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0,0.323292113637624,0.355009592516614,0,0.67824236924195,0,0.272746120590835,0,90.3825162420302,38.4336328132307,78.5471053797944,97.3377306594328,95.6296024818632,18.6138453128673,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.269662616320329,0.196221465125346,0,0,0,0,1.47008711385542,0,0,0,0,2.09080345523293,0.343135620597051,0.439001141634502,0,1.40740561376283,0.462942225792648,0,0,0,1.27523445472584,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0.766765358330422,0,0,2.07328115540772,0.576479813667846,0.6312121671319,5211.65317192407,2110.10406278393,5211.48770295869,1602.94881923275,1826.93606285995,5349.10986020017,4396.01053385829,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0.710783897485092,0,0,0,0.099972991182057,3.64871341923571,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0.157702415033935,0.234282829985426,0,0,4.1389228517002,0,0.553107505625109,0.0868836144680828,1.95801157462741,0,0,0,0,0.606255142892519,0,0.907170879989041,0,0.153461973288062,0,0.128139149255701,0.511707249066704,0,0,0,0,0,0,0,1.32945394550784,0,0,0,0,0.786746489756545,0,0.308061348417659,0.784349769176855,0,0.105551628892876,0,0.170093705276516,0,0,0.541892875087706,1.00337954770971,1.27438136522519,0.831076008928724,0.223874754722178,0,0,438.786164074142,308.333766957723,551.516378955994,0.309123034943167,0,0,1.14853107599234,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0,0.744316738719335,0.316379424718726,0.190630193923825,0.767693373934002,0,0,0,1.07923474549989,0.54907405947211,0.117812402345686,0.202182481573316,0,0.842516912477962,0,0.487426979262569,1.05650146756755,0.136499911407986,0,0,0,0.66343897524122,0,0,38.0418956187047,0.202910376962704,0,0.281695602532241,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,1.6023610669121,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0.324621940274555,0.561594356226918,0,0,0,0,0.1605880751037,0,0,0,0.307240764308458,0,0,0,0.835218521685727,0,0,0,0,0.18714054040822,2.19762268907841,0,0.334330152832435,0,0.47748896947538,8.31501106331388,0.307160702099232,0,0,0,0.16480387422676,0,0.398495976502139,0,0,0.102268682502155,0,0,0.718946809178615,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0.508507300585533,0.236387681767936,2.41320361269025,0,0.173624994933292,0,0,0,0.110579259931225,0,0,0.653630781113941,0.278847488557207,0.384751292518985,0,1.61394733071642,45.1480951381154,16.4057531602232,0.31900115973192,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,1.95879369790977,4.38194521445217,1.29833183845255,0,2.29989667708682,0,0,0,0,0,0.802577647298789,0,0.182454789215666,0,0,0.394584402849391,0,0,0.063186579628488,0,0.207376382794494,0,0,0,0,1.99226682220855,0,0.347119476670262,0.391969589657511,0.0870592065804026,0,0.687944129886466,0.677294319023596,0.438535902517113,0.410577285266046,0,0,286.769560050496,0.137041924646751,0.19871461170299,0.0633107959558787,0,0,0.85381197895741,0,0,0.229073192331831,0.686379991447858,0,0.124252535565433,0,0,0.313808538937,0,0,0,0,0,0,0,0.279282401272254,0,0,0.998395002494955,0,0,0.403100834920358,0,5.82479747637269,0.236349546921671,0,0.0674035438541849,0,0.338693328263138,0,0,25.238244309008,25.4447957704883,24.9264202817511,0.2249738915515,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.961086713109252,0.157204305099666,0,0,0,0.121792598380896,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.372578417648301,0.276697269872462,0,853.936180877019,4146.95490040774,0,0.468334905806882,0,0.149254802886874,0.233713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| 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| ||
|short_description=p1@PMEL | |||
}} | }} |
Latest revision as of 09:13, 19 September 2015
Short description: | p1@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000550464, ENST00000550590_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.15e-33 | 14 |
melanocyte | 1.40e-28 | 10 |
melanoblast | 1.40e-28 | 10 |
embryonic stem cell | 1.36e-14 | 5 |
neurecto-epithelial cell | 4.57e-13 | 20 |
columnar/cuboidal epithelial cell | 9.97e-13 | 27 |
visual pigment cell | 2.10e-12 | 4 |
ecto-epithelial cell | 3.31e-11 | 34 |
light melanocyte | 7.38e-10 | 3 |
retinal pigment epithelial cell | 1.26e-09 | 3 |
ectodermal cell | 8.91e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
retina | 4.59e-12 | 6 |
photoreceptor array | 4.59e-12 | 6 |
posterior segment of eyeball | 4.59e-12 | 6 |
layer of retina | 6.75e-12 | 4 |
pigmented layer of retina | 1.26e-09 | 3 |
presumptive retinal pigmented epithelium | 1.26e-09 | 3 |
spinal cord | 6.60e-08 | 3 |
dorsal region element | 6.60e-08 | 3 |
dorsum | 6.60e-08 | 3 |
eye | 3.32e-07 | 21 |
visual system | 3.32e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
melanoma | 4.48e-07 | 2 |