Template:EntrezGene: Difference between revisions
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{{Fontsize|3|TSS regions }} | {{Fontsize|3|TSS regions }} | ||
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{{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format= | {{#ask:[[FFCP PHASE2:+]][[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|?Short_description|format=table|class=ffcp_list stripe cell-border order-column compact|headers=hide|limit=20000|searchlabel= ... further results}} | ||
<br> | <br> | ||
<html> | <html> | ||
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dom: 'Blfrtip', | dom: 'Blfrtip', | ||
lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]], | lengthMenu: [[10, 25, 50, -1], [10, 25, 50, "All"]], | ||
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'] | buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'], | ||
columns: [{title:"TSS peak ID"},{title:"Short_description"}] | |||
}); | }); | ||
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var plot1 = $.plot($("#gene_exptable_chart"), plotdata, { | var plot1 = $.plot($("#gene_exptable_chart"), plotdata, { | ||
yaxis : { axisLabel : 'TPM' }, | yaxis: { axisLabel: 'TPM' }, | ||
lines : { show : false }, | lines: { show: false }, | ||
points : { show : true }, | points: { show: true }, | ||
grid: { hoverable: true, clickable: true }, | grid: { hoverable: true, clickable: true }, | ||
xaxis : { tickDecimals : 0, show: false }, | xaxis: { tickDecimals: 0, show: false }, | ||
legend: { show: false } | legend: { show: false } | ||
}); | }); | ||
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$("#y").text(pos.y.toFixed(2)); | $("#y").text(pos.y.toFixed(2)); | ||
if (item) { | if (item) { | ||
if (previousPoint != item.dataIndex) { | if (previousPoint!=item.dataIndex) { | ||
previousPoint = item.dataIndex; | previousPoint = item.dataIndex; | ||
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{{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br> | {{Fontsize|3|ENCODE TF ChIP-seq peak enrichment analysis }}{{#info:Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br> | ||
<br><br>link to source dataset.<br>[ | <br><br>link to source dataset.<br>[//fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data] | ||
}} | }} | ||
---- | ---- | ||
Latest revision as of 11:48, 22 September 2021
| Symbol: | {{{Symbol}}} | ||
|---|---|---|---|
| Description: | {{{description}}} | ||
| Synonyms: | |||
| Species: | NA | ||
| Xrefs: |
| ||
| Associated motifs: | NA | ||
| Transcripton Factor?: | No |
TSS regions
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
TSS expression
- Click each plot point to find sample in table
ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data
No analysis results for this cluster
Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse
| GeneID: | {{{GeneID}}} |
|---|---|
| LocusTag: | {{{LocusTag}}} |
| chromosome: | {{{chromosome}}} |
| map location: | |
| type of gene: | {{{type_of_gene}}} |
| Symbol from nomenclature authority: | {{{Symbol_from_nomenclature_authority}}} |
| Full name from nomenclature authority: | {{{Full_name_from_nomenclature_authority}}} |
| Nomenclature status: | {{{Nomenclature_status}}} |
| Other designations: | |
| Modification date: | Error: Invalid time. |
