FFCP PHASE1:Hg19::chr16:68678809..68678833,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:68678809..68678833,+ to FFCP PHASE1:Hg19::chr16:68678809..68678833,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1001 | |EntrezGene=1001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1762 | |HGNC=1762 | ||
|TSSclassifier=strong | |||
|UniProt=P22223 | |UniProt=P22223 | ||
|association_with_transcript=70bp_to_ENST00000264012_5end | |||
|cluster_id=chr16:68678809..68678833,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_5_at_CDH3_5end | |||
|id=chr16:68678809..68678833,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.95e-19!254;CL:0002077!8.05e-18!33;CL:0002076!2.94e-16!43;CL:0002368!5.58e-12!13;CL:0000148!9.35e-12!10;CL:0000541!9.35e-12!10;CL:0000075!3.72e-10!27;CL:0002159!9.16e-10!13;CL:0000710!1.03e-09!20;CL:0000223!1.20e-09!59;CL:0000147!2.40e-09!14;CL:0002251!5.23e-09!21;CL:0002202!4.09e-07!9;CL:0002632!4.09e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002077;1.02e-22;34!CL:0000148;3.58e-22;10!CL:0000147;1.54e-15;14!CL:0002567;6.99e-15;3!CL:0002159;8.25e-14;14!CL:0000710;1.06e-13;20!CL:0000622;1.57e-13;5!CL:0000075;2.50e-12;27!CL:0002076;4.30e-12;42!CL:0000150;1.12e-11;9!CL:0000154;2.68e-11;6!CL:0002368;2.99e-11;13!CL:0002327;2.07e-10;4!CL:0000317;2.71e-09;2!CL:1000448;2.71e-09;2!CL:0002308;2.71e-09;2!CL:0002140;2.71e-09;2!CL:0000362;1.08e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002077,5.25e-26,34;CL:0000148,3.96e-22,10;CL:0000541,3.96e-22,10;CL:0000147,1.66e-15,14;CL:0002567,6.87e-15,3;CL:0000066,2.96e-14,253;CL:0002076,3.78e-14,42;CL:0002159,6.17e-14,14;CL:0000710,1.14e-13,20;CL:0000622,1.43e-13,5;CL:0000075,2.59e-12,27;CL:0000150,1.06e-11,9;CL:0000154,2.48e-11,6;CL:0002368,2.53e-11,13;CL:0002327,2.18e-10,4;CL:0000221,4.37e-10,72;CL:0000223,1.70e-09,58;CL:0000317,2.01e-09,2;CL:1000448,2.01e-09,2;CL:0002308,2.01e-09,2;CL:0002140,2.01e-09,2;CL:0000362,1.00e-07,9;CL:0002321,5.05e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;2.27e-07;58 | |||
|ontology_enrichment_disease=DOID:1749!3.02e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!9.91e-10!169;UBERON:0000925!9.91e-10!169;UBERON:0006595!9.91e-10!169;UBERON:0001004!6.91e-09!72;UBERON:0000161!1.36e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;2.07e-10;4!UBERON:0002419;2.71e-09;2!UBERON:0007771;2.71e-09;2!UBERON:0003297;2.71e-09;2!UBERON:0001821;2.71e-09;2!UBERON:0003487;2.71e-09;2!UBERON:0001820;2.71e-09;2!UBERON:0002106;4.26e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,2.18e-10,4;UBERON:0005333,2.18e-10,4;UBERON:0008425,2.18e-10,4;UBERON:0005311,2.18e-10,4;UBERON:0002419,2.01e-09,2;UBERON:0007771,2.01e-09,2;UBERON:0003297,2.01e-09,2;UBERON:0001821,2.01e-09,2;UBERON:0003487,2.01e-09,2;UBERON:0001820,2.01e-09,2;UBERON:0005089,2.01e-09,2;UBERON:0005088,2.01e-09,2;UBERON:0000076,5.93e-09,8;UBERON:0005085,1.31e-07,31;UBERON:0002106,3.97e-07,3;UBERON:0004854,3.97e-07,3;UBERON:0009034,3.97e-07,3;UBERON:0002095,3.97e-07,3;UBERON:0004782,3.97e-07,3;UBERON:0003281,3.97e-07,3;UBERON:0009664,3.97e-07,3;UBERON:0002296,3.97e-07,3;UBERON:0005602,3.97e-07,3;UBERON:0001179,3.97e-07,3;UBERON:0006293,3.97e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.327447688744282,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.09098448236334,1.14721838155602,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0.122988438543114,0,1.20725313949488,2.24803506515239,0.100528972411631,0.555530670951178,0,0,0,2.31860809950154,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0.93733833986777,1.34385702559088,1.70130116690864,2.23896306757121,1.16253575405585,2.68367875415648,0,0,0,0,0,15.1759967358284,15.2795370223311,28.1321873304113,5.13217338068116,4.01027221542962,3.00343057843917,6.00235508524214,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0,0,0,0,0,0,0,0,2.40607764363942,1.01289087829486,0,0,0.262248829918848,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,1.50506932156456,0,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0,0,0,0,0,1.14853107599234,1.95018073810956,0,0,0,0,0,0,0,0,0,0.991709492165869,2.11409074101617,1.40373983744043,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,1.34060455107157,2.17781969722645,0.0941438007767792,1.29151611801369,0,3.54744122829341,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.41827123283581,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0.587954384486266,0.261177619741208,0.698906672968121,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0.670869375198532,0.0788057072991982,0.104909176269996,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0.856396000634902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,1.14241563650639,0,0,0,0,0,0,0,0,0,0.770479321629213,0,0.260994291965212,0,0.231522474323834,0,0,0.926404341482917,0,0,0.192914038270915,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0.279759015438889,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0.252071696221718,0.138314504928436,0.161475645631851,0,0.0981477185010256,0,0.366857197043358,0.115525666150338,0,0,0,6.24245725298835,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.827356886187777,0,0.156986185701028,0,0,1.82631744101899,0,0,1.35805433935647,0,0,0,0,1.03608082081518,1.53646629384555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.655678681511872,0,0,0,0.196308467114945,0,0.4226557275834,0,4.60521198101283,3.99638905436179,0,1.07132363163395,0.352894871715692,0,0,0.458729283404541,0.143339583151451,0.315543124386369,0,0.436350690340377,0,0,0,0,0.252332849670158,0.109265571963696,0.126698501011437,0.101988829741982,0,0,0,0.530450887527676,0.803892390468535,0,0,0.213233981900981,0,0.193766729508018,0.0620747142958579,0.33639558774184,0,0,0.435433495793923,0,0.202056159043763,0.286888821570705,0,0,0.213454691755431,0,0,0,1.833621662743,2.03448089157869,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.327447688744282,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.09098448236334,1.14721838155602,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0.122988438543114,0,1.20725313949488,2.24803506515239,0.100528972411631,0.555530670951178,0,0,0,2.31860809950154,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0.93733833986777,1.34385702559088,1.70130116690864,2.23896306757121,1.16253575405585,2.68367875415648,0,0,0,0,0,15.1759967358284,15.2795370223311,28.1321873304113,5.13217338068116,4.01027221542962,3.00343057843917,6.00235508524214,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0,0,0,0,0,0,0,0,2.40607764363942,1.01289087829486,0,0,0.262248829918848,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,1.50506932156456,0,0.831076008928724,0.447749509444357,0,0,0.256450125116389,0,0,0,0,0,1.14853107599234,1.95018073810956,0,0,0,0,0,0,0,0,0,0.991709492165869,2.11409074101617,1.40373983744043,1.71968227454435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,1.34060455107157,2.17781969722645,0.0941438007767792,1.29151611801369,0,3.54744122829341,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.41827123283581,1.53900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01098527405581,0,0,0,0,0,0,0,0,0,0.587954384486266,0.261177619741208,0.698906672968121,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0.195551382734803,0,0,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0.321506296930038,0.137539436597234,0,0,0,0.0607495566580247,0.670869375198532,0.0788057072991982,0.104909176269996,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0.856396000634902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,1.14241563650639,0,0,0,0,0,0,0,0,0,0.770479321629213,0,0.260994291965212,0,0.231522474323834,0,0,0.926404341482917,0,0,0.192914038270915,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0,0.279759015438889,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0.252071696221718,0.138314504928436,0.161475645631851,0,0.0981477185010256,0,0.366857197043358,0.115525666150338,0,0,0,6.24245725298835,0,0,0,0,0,0.202612753855184,0,0,0.126831620387814,0,0,1.48863353516788,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0,0,0,0.827356886187777,0,0.156986185701028,0,0,1.82631744101899,0,0,1.35805433935647,0,0,0,0,1.03608082081518,1.53646629384555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0.655678681511872,0,0,0,0.196308467114945,0,0.4226557275834,0,4.60521198101283,3.99638905436179,0,1.07132363163395,0.352894871715692,0,0,0.458729283404541,0.143339583151451,0.315543124386369,0,0.436350690340377,0,0,0,0,0.252332849670158,0.109265571963696,0.126698501011437,0.101988829741982,0,0,0,0.530450887527676,0.803892390468535,0,0,0.213233981900981,0,0.193766729508018,0.0620747142958579,0.33639558774184,0,0,0.435433495793923,0,0.202056159043763,0.286888821570705,0,0,0.213454691755431,0,0,0,1.833621662743,2.03448089157869,0,0,0 | ||
|short_description=p5@CDH3 | |||
}} | }} |
Latest revision as of 13:56, 17 September 2015
Short description: | p5@CDH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CDH3_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 70bp_to_ENST00000264012_5end |
EntrezGene: | CDH3 |
HGNC: | 1762 |
UniProt: | P22223 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelial cell | 5.25e-26 | 34 |
melanocyte | 3.96e-22 | 10 |
melanoblast | 3.96e-22 | 10 |
pigment cell | 1.66e-15 | 14 |
light melanocyte | 6.87e-15 | 3 |
epithelial cell | 2.96e-14 | 253 |
endo-epithelial cell | 3.78e-14 | 42 |
general ecto-epithelial cell | 6.17e-14 | 14 |
neurecto-epithelial cell | 1.14e-13 | 20 |
acinar cell | 1.43e-13 | 5 |
columnar/cuboidal epithelial cell | 2.59e-12 | 27 |
glandular epithelial cell | 1.06e-11 | 9 |
protein secreting cell | 2.48e-11 | 6 |
respiratory epithelial cell | 2.53e-11 | 13 |
mammary gland epithelial cell | 2.18e-10 | 4 |
ectodermal cell | 4.37e-10 | 72 |
endodermal cell | 1.70e-09 | 58 |
sebum secreting cell | 2.01e-09 | 2 |
epithelial cell of sweat gland | 2.01e-09 | 2 |
epithelial cell of skin gland | 2.01e-09 | 2 |
acinar cell of sebaceous gland | 2.01e-09 | 2 |
epidermal cell | 1.00e-07 | 9 |
embryonic cell | 5.05e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 2.18e-10 | 4 |
mammary bud | 2.18e-10 | 4 |
mammary ridge | 2.18e-10 | 4 |
mammary placode | 2.18e-10 | 4 |
skin gland | 2.01e-09 | 2 |
epidermis gland | 2.01e-09 | 2 |
gland of integumental system | 2.01e-09 | 2 |
sebaceous gland | 2.01e-09 | 2 |
skin sebaceous gland | 2.01e-09 | 2 |
sweat gland | 2.01e-09 | 2 |
sweat gland placode | 2.01e-09 | 2 |
sebaceous gland placode | 2.01e-09 | 2 |
external ectoderm | 5.93e-09 | 8 |
ectodermal placode | 1.31e-07 | 31 |
spleen | 3.97e-07 | 3 |
gastrointestinal system mesentery | 3.97e-07 | 3 |
stomach region | 3.97e-07 | 3 |
mesentery | 3.97e-07 | 3 |
gastrointestinal system serosa | 3.97e-07 | 3 |
mesentery of stomach | 3.97e-07 | 3 |
gut mesentery | 3.97e-07 | 3 |
dorsal mesentery | 3.97e-07 | 3 |
dorsal mesogastrium | 3.97e-07 | 3 |
peritoneal cavity | 3.97e-07 | 3 |
spleen primordium | 3.97e-07 | 3 |