FFCP PHASE1:Hg19::chr17:40912764..40912816,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:40912764..40912816,+ to FFCP PHASE1:Hg19::chr17:40912764..40912816,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10266 | |EntrezGene=10266 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9844 | |HGNC=9844 | ||
|TSSclassifier=strong | |||
|UniProt=O60895 | |UniProt=O60895 | ||
|association_with_transcript=-395bp_to_ENST00000253796,NM_005854,uc002ibg.2,uc002ibh.2,uc010cyt.2_5end | |||
|cluster_id=chr17:40912764..40912816,+ | |||
|description=CAGE_peak_5_at_RAMP2_5end | |||
|id=chr17:40912764..40912816,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.31e-07!6;CL:0000031!1.31e-07!6;CL:0000404!1.31e-07!6;CL:0000047!2.43e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002321;7.26e-15;15!CL:0000540;8.31e-15;6!CL:0000404;8.31e-15;6!CL:0000136;2.22e-14;13!CL:0000333;2.63e-13;5!CL:0002322;6.96e-12;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.72e-15,8;CL:0000540,5.46e-15,6;CL:0000031,5.46e-15,6;CL:0000404,5.46e-15,6;CL:0000136,2.50e-12,15;CL:0002322,5.40e-12,5;CL:0000133,7.90e-08,59 | |||
|ontology_enrichment_development_v019=CL:0000031;8.31e-15;6 | |||
|ontology_enrichment_disease=DOID:171!1.99e-08!10;DOID:3095!9.73e-08!22;DOID:2994!9.73e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:171;9.95e-12;10!DOID:169;5.25e-11;6!DOID:3095;1.61e-09;22!DOID:2994;1.61e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.27e-12,10;DOID:169,5.06e-11,6;DOID:3095,1.72e-09,22;DOID:2994,1.72e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.24e-19!115;UBERON:0000073!2.23e-17!94;UBERON:0001016!2.23e-17!94;UBERON:0005743!2.53e-15!86;UBERON:0001017!5.64e-15!82;UBERON:0002346!7.17e-12!90;UBERON:0001049!4.23e-10!57;UBERON:0005068!4.23e-10!57;UBERON:0006241!4.23e-10!57;UBERON:0007135!4.23e-10!57;UBERON:0003075!5.74e-10!86;UBERON:0007284!5.74e-10!86;UBERON:0000924!1.20e-08!173;UBERON:0006601!1.20e-08!173;UBERON:0000955!1.28e-08!69;UBERON:0006238!1.28e-08!69;UBERON:0000025!3.17e-08!194;UBERON:0003080!7.98e-08!42;UBERON:0002616!8.02e-08!59;UBERON:0000119!1.09e-07!312;UBERON:0002780!2.41e-07!41;UBERON:0001890!2.41e-07!41;UBERON:0006240!2.41e-07!41;UBERON:0004121!2.51e-07!169;UBERON:0000483!4.61e-07!309;UBERON:0000013!7.43e-07!5;UBERON:0002410!7.43e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.63e-13;5!UBERON:0002410;2.63e-13;5!UBERON:0000922;1.35e-09;49!UBERON:0000010;3.62e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.51e-13,5;UBERON:0002410,2.51e-13,5;UBERON:0001016,1.53e-07,89;UBERON:0000010,3.53e-07,8 | |||
|phase1_expression=0,2.35510576280081,1.55049844505568,0,1.78784437770915,0,12.6649939084155,0.631719873426831,3.65659879479774,0,0.697801167972428,0,0,0.247532705920093,0,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.767175371061182,0,0,0,0,0,0,0,0,1.83370705696798,0,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0.625098097988558,1.34717623575702,0.450445921933289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622422070799533,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46368447355514,2.91565490307268,3.83440011469411,2.07322110030741,2.77552935963191,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,2.8810180793198,2.94017422771084,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0.695582429850461,0.117408694235822,0.577465791044295,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.224262168690721,0.87192013766656,0.07333828582095,0,10.7296933755565,0,0,0,0,0,0,0.428933980974443,0,0,0,0.355391948742546,0,1.50719688529793,0.871533458600294,0.99972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50699269288109,4.63973287666617,6.36561808270525,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.979005787313703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,1.32945394550784,0,0,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.647747748306418,3.08454505380579,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0,0,0.309123034943167,0,0,0,0,0,0.386682873168488,0,0.460511024178389,0,0,0.290033387828457,0.255679882248303,1.4245125703478,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56731081233197,0.121360521749513,0,0,0,0,0,0,0.844016498463076,0,0,0.211125408127993,0.996239941255349,0,3.27512572210559,0,0,0,0,0,0,0.295930216910801,0,0,0,0.463840490809256,5.98841394003583,0,0,0.724999575434793,0,0,0,1.03423011972439,0.291604613383254,2.08349993919951,0,0.482385754501632,0,0.331737779793674,0,0.219385397153973,0,0,0.615602068030377,0,0,0.538545866458633,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,2.54435528581093,0.216388639742091,0,1.23840590304675,0.611030144933625,0,0,0,0.539209063845416,0,0.468528891450678,0,0,0,0,0,7.95789180239274,4.35987399436567,0,0,0,0,0,0,4.83836228250648,0,0,0,0,0.52418000472609,0,0,0,0,0.290967049465258,0,1.80784592624426,0,0,0.569797163602908,0,0,1.06726497369676,0,0,0,2.57392496792947,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0.558564802544508,0.458320848023367,0,0,0.429226048136571,0.223171457441873,0.470284307407084,0,0,0.787831823072237,0.906574442192831,0.26961417541674,0,0,1.59045937961861,0.817220436669454,1.44677833618517,12.2410098571538,6.23160507043778,0,0,0.546746009922222,0,0.394028536495991,2.25554728980492,0,0,0,0.714695326373367,1.32418394073086,0,0,0,0,0,0,0,0.566560457600628,0.293104467356165,0,0.258565912723101,0.66116300871345,0,0,0.320362237703084,0.943225830597996,0,0.992332043623902,0,0,0,7.61624924717264,5.2644877744767,5.82056595850577,25.5740651953647,0,0,0.244052529803926,0.1251909307065,0,0.221858103073705,0.745156835296601,19.6455061609448,0,0,0,0,0.468334905806882,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10360652596106,0.380805212168795,0,0,0.537052785212442,0,0,0,0,0,0,0,0.428883182749851,0.782982875895635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5568033581871,2.58779547352036,7.70603115093892,5.13285299502465,0.33946505990805,3.18862380152524,1.61116493536703,4.46915934378595,0,0,4.80342448971282,0,0,0.385375350578757,0,0.638535436228605,0,4.78936222821264,0.345786262321089,0.968853873791107,0,0,0,0,0,0,0,0.198916222116275,2.55715116387475,0,0,0,0,0,0.337687923091973,0,0,0.443910671357348,6.01672289920042,0,1.48863353516788,0.703484977438482,0,0.535701835878287,0.336283722218824,0,0,0.709618961301111,0,0,0.135939465953663,0.328863867814245,0,0,1.17739639275771,0.157115589916002,0,1.82631744101899,0,0,7.21913096184229,2.84424501118908,0,2.08629926763095,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0.485710993059139,2.33939463462106,3.38216317774326,0.951360726220549,0,10.4443490908158,1.20770274853339,0.154348316215889,0.874238242015829,0,0,0,0.588925401344836,0.297046400327086,1.2679671827502,0,0.375935671919414,1.09578409555081,0,0,0,0,0,0,0.286679166302903,0.946629373159108,1.15585533324555,4.36350690340377,1.5870805215462,0,0,0,3.15416062087697,0,1.0135880080915,0.3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| 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| ||
|short_description=p5@RAMP2 | |||
}} | }} |
Latest revision as of 15:52, 24 September 2015
Short description: | p5@RAMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAMP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -395bp_to_ENST00000253796, NM_005854, uc002ibg.2, uc002ibh.2, uc010cyt.2_5end |
EntrezGene: | RAMP2 |
HGNC: | 9844 |
UniProt: | O60895 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.72e-15 | 8 |
neuron | 5.46e-15 | 6 |
neuroblast | 5.46e-15 | 6 |
electrically signaling cell | 5.46e-15 | 6 |
fat cell | 2.50e-12 | 15 |
embryonic stem cell | 5.40e-12 | 5 |
neurectodermal cell | 7.90e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.51e-13 | 5 |
autonomic nervous system | 2.51e-13 | 5 |
nervous system | 1.53e-07 | 89 |
peripheral nervous system | 3.53e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.27e-12 | 10 |
neuroendocrine tumor | 5.06e-11 | 6 |
germ cell and embryonal cancer | 1.72e-09 | 22 |
germ cell cancer | 1.72e-09 | 22 |