FFCP PHASE1:Hg19::chr17:48269169..48269186,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:48269169..48269186,- to FFCP PHASE1:Hg19::chr17:48269169..48269186,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-407bp_to_Y15916_5end | |||
|cluster_id=chr17:48269169..48269186,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_2_at_Y15916_5end | |||
|id=chr17:48269169..48269186,- | |||
|ontology_enrichment_celltype=CL:0000055!2.01e-41!180;CL:0000057!1.76e-25!75;CL:0000183!6.71e-19!59;CL:0000680!1.42e-18!57;CL:0000056!1.42e-18!57;CL:0000355!1.42e-18!57;CL:0000187!1.15e-17!54;CL:0000048!5.71e-15!430;CL:0000723!1.68e-14!436;CL:0000393!4.24e-14!60;CL:0000211!4.24e-14!60;CL:0000034!8.55e-14!444;CL:0000192!3.61e-13!42;CL:0000514!3.61e-13!42;CL:0002371!4.90e-11!591;CL:0000144!5.67e-11!625;CL:0002620!5.49e-10!23;CL:0000359!4.95e-09!32;CL:0002334!2.27e-08!12;CL:0002494!1.59e-07!16;CL:0000222!1.75e-07!119;CL:0000499!2.60e-07!27;CL:0002320!3.91e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.84e-12;55!CL:0000723;3.88e-11;61!CL:0000048;4.43e-11;58!CL:0002334;2.19e-09;12!CL:0002320;2.32e-09;188!CL:0000057;1.12e-08;73!CL:0000187;1.52e-08;55!CL:0000499;1.54e-08;28!CL:0002494;1.64e-08;16!CL:0002620;2.57e-08;23!CL:0000034;4.75e-08;69!CL:0000327;5.70e-07;15!CL:0002569;7.88e-07;6!CL:0002570;9.60e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.13e-23,76;CL:0000048,2.27e-20,427;CL:0000723,1.92e-19,433;CL:0000034,2.96e-18,441;CL:0000680,8.94e-14,58;CL:0000056,8.94e-14,58;CL:0000355,8.94e-14,58;CL:0000187,2.43e-13,55;CL:0002320,1.54e-12,361;CL:0000393,6.10e-11,61;CL:0000211,6.10e-11,61;CL:0000134,2.32e-10,354;CL:0002334,2.20e-09,12;CL:0000192,6.53e-09,43;CL:0000514,6.53e-09,43;CL:0000499,1.42e-08,28;CL:0002494,1.49e-08,16;CL:0000219,2.40e-08,386;CL:0002620,3.04e-08,23;CL:0000327,5.55e-07,15;CL:0002569,6.80e-07,6;CL:0002570,8.70e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;4.27e-07;58 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.31e-20!83;UBERON:0002329!1.31e-20!83;UBERON:0003077!1.31e-20!83;UBERON:0003059!1.31e-20!83;UBERON:0007282!1.31e-20!83;UBERON:0009618!1.31e-20!83;UBERON:0007285!1.31e-20!83;UBERON:0004290!2.16e-19!70;UBERON:0001134!1.23e-18!61;UBERON:0002036!1.23e-18!61;UBERON:0003082!1.23e-18!61;UBERON:0002385!2.12e-17!63;UBERON:0001015!2.12e-17!63;UBERON:0000383!2.12e-17!63;UBERON:0000486!2.27e-16!82;UBERON:0005256!3.39e-15!143;UBERON:0002100!2.57e-10!216;UBERON:0000475!1.60e-08!365;UBERON:0002199!5.37e-08!45;UBERON:0002416!5.37e-08!45;UBERON:0000490!7.25e-08!138;UBERON:0001013!1.05e-07!14;UBERON:0003102!1.62e-07!95;UBERON:0002384!1.67e-07!375;UBERON:0004872!1.91e-07!84;UBERON:0002097!5.06e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.02e-09;198!UBERON:0003104;6.77e-08;7!UBERON:0009142;6.77e-08;7!UBERON:0004457;1.63e-07;9!UBERON:0000042;1.63e-07;9!UBERON:0003688;4.49e-07;6!UBERON:0002358;4.49e-07;6!UBERON:0003684;4.49e-07;6!UBERON:0001178;4.49e-07;6!UBERON:0001013;4.53e-07;14!UBERON:0003422;7.88e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.23e-14,62;UBERON:0002036,2.23e-14,62;UBERON:0003082,2.23e-14,62;UBERON:0007524,1.24e-13,73;UBERON:0002385,1.56e-13,64;UBERON:0001015,1.56e-13,64;UBERON:0000383,1.56e-13,64;UBERON:0002329,2.69e-13,71;UBERON:0003059,2.69e-13,71;UBERON:0007282,2.69e-13,71;UBERON:0004290,2.69e-13,71;UBERON:0009618,2.69e-13,71;UBERON:0003077,6.26e-13,72;UBERON:0007285,6.26e-13,72;UBERON:0002384,3.44e-12,371;UBERON:0007503,1.06e-11,78;UBERON:0000486,3.87e-11,83;UBERON:0003104,4.31e-09,160;UBERON:0009142,4.31e-09,160;UBERON:0005256,9.20e-09,122;UBERON:0002199,1.76e-07,46;UBERON:0002416,1.76e-07,46;UBERON:0003688,3.82e-07,6;UBERON:0002358,3.82e-07,6;UBERON:0003684,3.82e-07,6;UBERON:0001178,3.82e-07,6;UBERON:0001013,4.20e-07,14;UBERON:0003422,6.80e-07,6 | |||
|phase1_expression=5.26867299884614,6.20891519283851,3.94672331468719,17.0124607200322,25.9237434767827,17.4467704820074,12.6649939084155,0,0.261185628199839,0.245733936501509,0,0,6.59417445571134,1.48519623552056,5.96515276310248,2.01697543935533,3.01347264011988,3.65155045193687,0.975865597581014,2.21617904538218,6.32402142857184,5.64218498660558,0.286235987131057,0.684372125364421,0.87879847716362,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,8.71911117614727,1.91793842765295,3.61439152384566,7.01873074890245,12.31195411167,4.7717156823066,13.6257763684738,1.03988298880475,4.43458794925128,2.45937399940753,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,4.30543739659571,0.926864265692532,43.8860029745685,4.61068896857864,5.04609840128076,2.1349799145941,13.813382711361,0.933633106199299,2.82892411346345,2.12500474047496,4.54072282934794,2.30470369792,0.70296429550139,0.936480230490962,0,0.747243402759005,0.587172493218824,0.647491777472526,1.12360645361799,0.408308342509787,0.859840221182376,0.516628905878827,8.31602000097437,18.0504858373347,1.82032272387605,8.62341770179486,0.336672227908132,0.375355559615893,0,2.19488810440419,13.7919508109559,9.314759652209,1.24775401476023,7.35497506324334,6.62027905337559,4.23863802319124,11.4034616512073,2.78241828943785,10.8209026819164,3.35010341396862,4.89451363499672,5.06672426838233,7.82544700156755,3.22174645248048,6.46584227275248,12.7803453305981,2.41805035746337,1.52604533079439,0,0.272746120590835,0,0,0,0.116193942869518,0.621966330092223,0,0,1.56449532329816,7.07565032012174,0,3.71494342425583,5.77503585335668,0,0,0,0,0,0,0,0,0,0,12.6217596423101,4.9388881359768,30.8718293909638,0,0,0,0,0,1.54411029268673,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,1.44331342025273,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.672786506072164,4.3596006883328,0.4400297149257,2.45616259939778,7.15312891703765,8.45302752556,5.05282421511254,10.4007436911366,1.28603687131071,2.83698264046557,2.93064396917709,6.14805372730035,20.0769993994834,4.93944202068461,0.977208552881205,9.95097456479128,11.087326221068,0.602878754119172,0,0.599837947092342,0,0,0,8.62649479769697,19.5265290917994,1.42636905040718,2.89562613335158,1.84928690295345,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,2.00068208423871,2.71265023699736,23.9166490760428,31.4035020283005,14.0355149380202,2.92853537481783,2.70851489754947,2.27407504055985,6.2083842775503,4.64957918974806,4.05612170791747,1.91143951829782,5.87403472388222,16.1277409191102,0,0,0,0.303127571446259,6.65741758041988,6.95497674658265,9.42809669711352,3.99001130548962,26.1013887822758,7.68834895534206,5.62877973973374,14.6377068240683,19.2943486378488,2.00472601943452,5.50441348470694,0.492762936082855,3.63478100428535,5.11325665223821,0,0.200506470303285,0,4.13332013392584,6.3731908802351,6.81846957789005,0,0.0770153371044148,0.784349769176855,0,0,0,0,0.215915916102139,0,0.541892875087706,3.51182841698397,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,1.09883357782012,0.330037999682352,0.574265537996172,0,1.6068392984416,0.96670718292122,2.00263202249038,1.84204409671355,2.34322173223702,1.39646318328756,5.22060098091223,1.44885266607372,4.18450567539666,0.495854746082934,0.192190067365106,0,0,5.11330104227014,19.5183655034997,0.6970372701606,0.616067160352178,0.532306030317022,0.869932992075073,0.18532421910392,0,0.372158369359667,2.53103539774981,7.24394736910534,4.09436466098134,0.42793898803392,0.636406495851874,4.70969184119538,1.97859703341646,13.4523144570667,3.88780927740765,0,3.17020642346017,3.37006764991185,3.90106991271672,3.65570234446927,3.16950440270266,1.50149902548784,9.04994764503762,7.910568163417,4.96228809191512,1.99031692572366,0,1.15755106853338,3.27947376023316,0.202910376962704,1.54911749049875,2.81695602532241,0.430234056612155,1.8667317792493,0.35667105148125,1.06428319221179,6.54433669422759,6.25660296623814,0.379473173765715,2.44954304171488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0,0,0,5.59871257791253,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.846452843541768,0.113942055847001,0,0,0,0.957003479195758,1.55715908783166,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0.611030144933625,0,0,0,0,13.6438200040794,0,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0.219267951258557,0,0.0969890164884194,0,5.42353777873278,0,0,0,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0.288950589901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| ||
|short_description=p2@Y15916 | |||
}} | }} |
Latest revision as of 18:35, 25 July 2015
Short description: | p2@Y15916 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_Y15916_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -407bp_to_Y15916_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.13e-23 | 76 |
multi fate stem cell | 2.27e-20 | 427 |
somatic stem cell | 1.92e-19 | 433 |
stem cell | 2.96e-18 | 441 |
muscle precursor cell | 8.94e-14 | 58 |
myoblast | 8.94e-14 | 58 |
multi-potent skeletal muscle stem cell | 8.94e-14 | 58 |
muscle cell | 2.43e-13 | 55 |
connective tissue cell | 1.54e-12 | 361 |
electrically responsive cell | 6.10e-11 | 61 |
electrically active cell | 6.10e-11 | 61 |
mesenchymal cell | 2.32e-10 | 354 |
preadipocyte | 2.20e-09 | 12 |
smooth muscle cell | 6.53e-09 | 43 |
smooth muscle myoblast | 6.53e-09 | 43 |
stromal cell | 1.42e-08 | 28 |
cardiocyte | 1.49e-08 | 16 |
motile cell | 2.40e-08 | 386 |
skin fibroblast | 3.04e-08 | 23 |
extracellular matrix secreting cell | 5.55e-07 | 15 |
mesenchymal stem cell of umbilical cord | 6.80e-07 | 6 |
mesenchymal stem cell of adipose | 8.70e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.23e-14 | 62 |
striated muscle tissue | 2.23e-14 | 62 |
myotome | 2.23e-14 | 62 |
dense mesenchyme tissue | 1.24e-13 | 73 |
muscle tissue | 1.56e-13 | 64 |
musculature | 1.56e-13 | 64 |
musculature of body | 1.56e-13 | 64 |
somite | 2.69e-13 | 71 |
presomitic mesoderm | 2.69e-13 | 71 |
presumptive segmental plate | 2.69e-13 | 71 |
dermomyotome | 2.69e-13 | 71 |
trunk paraxial mesoderm | 2.69e-13 | 71 |
paraxial mesoderm | 6.26e-13 | 72 |
presumptive paraxial mesoderm | 6.26e-13 | 72 |
connective tissue | 3.44e-12 | 371 |
epithelial vesicle | 1.06e-11 | 78 |
multilaminar epithelium | 3.87e-11 | 83 |
mesenchyme | 4.31e-09 | 160 |
entire embryonic mesenchyme | 4.31e-09 | 160 |
trunk mesenchyme | 9.20e-09 | 122 |
integument | 1.76e-07 | 46 |
integumental system | 1.76e-07 | 46 |
omentum | 3.82e-07 | 6 |
peritoneum | 3.82e-07 | 6 |
abdominal cavity | 3.82e-07 | 6 |
visceral peritoneum | 3.82e-07 | 6 |
adipose tissue | 4.20e-07 | 14 |
mesenchyme of umbilical cord | 6.80e-07 | 6 |