FFCP PHASE1:Hg19::chr2:136875437..136875441,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:136875437..136875441,- to FFCP PHASE1:Hg19::chr2:136875437..136875441,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7852 | |EntrezGene=7852 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2561 | |HGNC=2561 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-130bp_to_ENST00000466288,uc010fnk.2_5end | |||
|cluster_id=chr2:136875437..136875441,- | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_6_at_CXCR4_5end | |||
|id=chr2:136875437..136875441,- | |||
|ontology_enrichment_celltype=CL:0000738!1.75e-55!140;CL:0002087!1.46e-49!119;CL:0000037!4.21e-43!172;CL:0000566!4.21e-43!172;CL:0000988!1.78e-40!182;CL:0002031!9.82e-40!124;CL:0002032!1.80e-38!165;CL:0000837!1.80e-38!165;CL:0000542!2.03e-32!53;CL:0000051!2.03e-32!53;CL:0000838!2.90e-31!52;CL:0000766!1.48e-20!76;CL:0000860!1.99e-18!45;CL:0002057!1.71e-17!42;CL:0000945!8.79e-16!24;CL:0000826!8.79e-16!24;CL:0000791!6.23e-15!18;CL:0000789!6.23e-15!18;CL:0002420!6.23e-15!18;CL:0002419!6.23e-15!18;CL:0000790!6.23e-15!18;CL:0002194!8.65e-15!63;CL:0000576!8.65e-15!63;CL:0000040!8.65e-15!63;CL:0000559!8.65e-15!63;CL:0002009!4.64e-14!65;CL:0000236!6.53e-14!14;CL:0000094!2.28e-13!8;CL:0000084!1.13e-12!25;CL:0000827!1.13e-12!25;CL:0000839!1.98e-12!70;CL:0000557!3.92e-12!71;CL:0000763!8.72e-12!112;CL:0000049!8.72e-12!112;CL:0000624!1.16e-10!6;CL:0002393!4.96e-10!9;CL:0002397!4.96e-10!9;CL:0000081!3.52e-09!11;CL:0000134!4.56e-09!358;CL:0002320!1.67e-08!365;CL:0000219!6.23e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000624;2.67e-24;6!CL:0000791;2.44e-21;18!CL:0000789;2.44e-21;18!CL:0002419;2.44e-21;18!CL:0000084;8.22e-15;25!CL:0000775;2.24e-14;3!CL:0000094;4.20e-14;8!CL:0000226;8.92e-14;3!CL:0000842;8.92e-14;3!CL:0000623;1.06e-13;3!CL:0000542;2.47e-13;53!CL:0000898;1.71e-12;3!CL:0000081;3.72e-10;11!CL:0000771;3.90e-10;2!CL:0000815;6.81e-09;2!CL:0000792;6.81e-09;2!CL:0002677;6.81e-09;2!CL:0000738;1.53e-07;136!CL:0000236;1.59e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.64e-26,136;CL:0000624,1.08e-24,6;CL:0000838,1.23e-21,52;CL:0000791,1.47e-21,18;CL:0000789,1.47e-21,18;CL:0002420,1.47e-21,18;CL:0002419,1.47e-21,18;CL:0000790,1.47e-21,18;CL:0002087,2.95e-21,115;CL:0000542,3.80e-21,53;CL:0000051,3.80e-21,53;CL:0000037,2.10e-19,168;CL:0000988,4.92e-18,177;CL:0002032,3.96e-16,161;CL:0000837,3.96e-16,161;CL:0002031,3.34e-15,120;CL:0000084,5.76e-15,25;CL:0000827,5.76e-15,25;CL:0000775,2.20e-14,3;CL:0000094,4.11e-14,8;CL:0000226,8.76e-14,3;CL:0000842,8.76e-14,3;CL:0000623,9.55e-14,3;CL:0000825,9.55e-14,3;CL:0000898,5.80e-13,3;CL:0000081,3.66e-10,11;CL:0000771,3.83e-10,2;CL:0000815,3.25e-09,2;CL:0000792,3.25e-09,2;CL:0002677,3.25e-09,2;CL:0000236,6.36e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;2.44e-21;18!CL:0000051;2.47e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.65e-24!102;UBERON:0003061!4.65e-24!102;UBERON:0002193!8.23e-23!112;UBERON:0000178!2.23e-14!15;UBERON:0000179!2.23e-14!15;UBERON:0000463!2.23e-14!15;UBERON:0002371!1.04e-10!80;UBERON:0002405!1.03e-09!115;UBERON:0001474!2.27e-09!86;UBERON:0002384!3.80e-08!375;UBERON:0004765!8.55e-07!101;UBERON:0001434!8.55e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.51e-26;15!UBERON:0000179;1.51e-26;15!UBERON:0000463;1.51e-26;15!UBERON:0002390;2.48e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.11e-26,15;UBERON:0000179,2.11e-26,15;UBERON:0000463,2.11e-26,15;UBERON:0002390,2.93e-09,98;UBERON:0003061,2.93e-09,98;UBERON:0002193,4.76e-08,108 | |||
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| ||
|short_description=p6@CXCR4 | |||
}} | }} |
Latest revision as of 03:08, 17 September 2015
Short description: | p6@CXCR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CXCR4_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -130bp_to_ENST00000466288, uc010fnk.2_5end |
EntrezGene: | CXCR4 |
HGNC: | 2561 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.64e-26 | 136 |
CD4-positive, alpha-beta T cell | 1.08e-24 | 6 |
lymphoid lineage restricted progenitor cell | 1.23e-21 | 52 |
mature alpha-beta T cell | 1.47e-21 | 18 |
alpha-beta T cell | 1.47e-21 | 18 |
immature T cell | 1.47e-21 | 18 |
mature T cell | 1.47e-21 | 18 |
immature alpha-beta T cell | 1.47e-21 | 18 |
nongranular leukocyte | 2.95e-21 | 115 |
lymphocyte | 3.80e-21 | 53 |
common lymphoid progenitor | 3.80e-21 | 53 |
hematopoietic stem cell | 2.10e-19 | 168 |
hematopoietic cell | 4.92e-18 | 177 |
hematopoietic oligopotent progenitor cell | 3.96e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.96e-16 | 161 |
hematopoietic lineage restricted progenitor cell | 3.34e-15 | 120 |
T cell | 5.76e-15 | 25 |
pro-T cell | 5.76e-15 | 25 |
neutrophil | 2.20e-14 | 3 |
granulocyte | 4.11e-14 | 8 |
single nucleate cell | 8.76e-14 | 3 |
mononuclear cell | 8.76e-14 | 3 |
natural killer cell | 9.55e-14 | 3 |
pro-NK cell | 9.55e-14 | 3 |
naive T cell | 5.80e-13 | 3 |
blood cell | 3.66e-10 | 11 |
eosinophil | 3.83e-10 | 2 |
regulatory T cell | 3.25e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.25e-09 | 2 |
naive regulatory T cell | 3.25e-09 | 2 |
B cell | 6.36e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
blood | 2.11e-26 | 15 |
haemolymphatic fluid | 2.11e-26 | 15 |
organism substance | 2.11e-26 | 15 |
hematopoietic system | 2.93e-09 | 98 |
blood island | 2.93e-09 | 98 |
hemolymphoid system | 4.76e-08 | 108 |