FFCP PHASE1:Hg19::chr2:220252603..220252666,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:220252603..220252666,- to FFCP PHASE1:Hg19::chr2:220252603..220252666,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23549 | |EntrezGene=23549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2981 | |HGNC=2981 | ||
|TSSclassifier=strong | |||
|UniProt=B9ZVU2,E7EWP4,E3W974,E3W979,Q9NV55,Q9ULA0,Q53SB6,Q9BSS9,Q9HAC6 | |UniProt=B9ZVU2,E7EWP4,E3W974,E3W979,Q9NV55,Q9ULA0,Q53SB6,Q9BSS9,Q9HAC6 | ||
|association_with_transcript=0bp_to_ENST00000322176,ENST00000337010,ENST00000373963,ENST00000373966,NM_012100,uc002vle.2,uc002vlh.2,uc002vlj.2_5end | |||
|cluster_id=chr2:220252603..220252666,- | |||
|description=CAGE_peak_1_at_DNPEP_5end | |||
|id=chr2:220252603..220252666,- | |||
|ontology_enrichment_celltype=CL:0002321!3.21e-13!248;CL:0000220!1.26e-12!246;CL:0000222!2.91e-09!119;CL:0000066!2.13e-08!254;CL:0000144!3.47e-08!625;CL:0000183!8.44e-08!59;CL:0000012!5.09e-07!682;CL:0000548!6.16e-07!679;CL:0000004!6.16e-07!679;CL:0000255!6.16e-07!679;CL:0002371!6.66e-07!591 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.58e-13,250;CL:0000222,1.51e-09,121;CL:0000066,3.65e-08,253;CL:0000187,4.89e-07,55;CL:0000680,8.95e-07,58;CL:0000056,8.95e-07,58;CL:0000355,8.95e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.64e-13!118;UBERON:0003104!1.78e-11!238;UBERON:0009142!1.78e-11!238;UBERON:0002100!4.03e-10!216;UBERON:0005256!2.85e-09!143;UBERON:0004872!5.22e-09!84;UBERON:0003103!3.43e-08!69;UBERON:0009569!4.02e-08!113;UBERON:0000490!1.02e-07!138;UBERON:0000486!5.34e-07!82;UBERON:0005177!6.04e-07!107;UBERON:0004290!6.12e-07!70;UBERON:0000055!8.21e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,5.90e-13,117;UBERON:0002100,8.74e-13,199;UBERON:0003104,9.27e-12,160;UBERON:0009142,9.27e-12,160;UBERON:0005256,3.17e-10,122;UBERON:0004872,1.57e-09,83;UBERON:0000490,2.93e-09,148;UBERON:0007503,2.54e-08,78;UBERON:0009569,6.05e-08,112;UBERON:0003103,7.29e-08,68;UBERON:0005177,1.63e-07,101;UBERON:0000055,2.70e-07,68;UBERON:0000486,2.71e-07,83;UBERON:0002329,3.01e-07,71;UBERON:0003059,3.01e-07,71;UBERON:0007282,3.01e-07,71;UBERON:0004290,3.01e-07,71;UBERON:0009618,3.01e-07,71;UBERON:0003077,6.67e-07,72;UBERON:0007285,6.67e-07,72;UBERON:0001009,9.33e-07,112 | |||
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| ||
|short_description=p1@DNPEP | |||
}} | }} |
Latest revision as of 20:33, 24 September 2015
Short description: | p1@DNPEP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DNPEP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000322176, ENST00000337010, ENST00000373963, ENST00000373966, NM_012100, uc002vle.2, uc002vlh.2, uc002vlj.2_5end |
EntrezGene: | DNPEP |
HGNC: | 2981 |
UniProt: | B9ZVU2E7EWP4E3W974E3W979Q9NV55Q9ULA0Q53SB6Q9BSS9Q9HAC6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.58e-13 | 250 |
mesodermal cell | 1.51e-09 | 121 |
epithelial cell | 3.65e-08 | 253 |
muscle cell | 4.89e-07 | 55 |
muscle precursor cell | 8.95e-07 | 58 |
myoblast | 8.95e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.95e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 5.90e-13 | 117 |
trunk | 8.74e-13 | 199 |
mesenchyme | 9.27e-12 | 160 |
entire embryonic mesenchyme | 9.27e-12 | 160 |
trunk mesenchyme | 3.17e-10 | 122 |
splanchnic layer of lateral plate mesoderm | 1.57e-09 | 83 |
unilaminar epithelium | 2.93e-09 | 148 |
epithelial vesicle | 2.54e-08 | 78 |
subdivision of trunk | 6.05e-08 | 112 |
compound organ | 7.29e-08 | 68 |
trunk region element | 1.63e-07 | 101 |
vessel | 2.70e-07 | 68 |
multilaminar epithelium | 2.71e-07 | 83 |
somite | 3.01e-07 | 71 |
presomitic mesoderm | 3.01e-07 | 71 |
presumptive segmental plate | 3.01e-07 | 71 |
dermomyotome | 3.01e-07 | 71 |
trunk paraxial mesoderm | 3.01e-07 | 71 |
paraxial mesoderm | 6.67e-07 | 72 |
presumptive paraxial mesoderm | 6.67e-07 | 72 |
circulatory system | 9.33e-07 | 112 |