FFCP PHASE1:Hg19::chr4:128981932..128981949,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:128981932..128981949,+ to FFCP PHASE1:Hg19::chr4:128981932..128981949,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55132 | |EntrezGene=55132 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24704 | |HGNC=24704 | ||
|TSSclassifier=strong | |||
|UniProt=Q659C4 | |UniProt=Q659C4 | ||
|association_with_transcript=-473bp_to_ENST00000326639_5end | |||
|cluster_id=chr4:128981932..128981949,+ | |||
|description=CAGE_peak_6_at_LARP1B_5end | |||
|id=chr4:128981932..128981949,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.04e-07!7;CL:0000586!3.04e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.78e-17;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.16e-17,12;CL:0000223,2.03e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0006298;9.12e-14;1!UBERON:0004161;9.27e-11;11!UBERON:0009497;3.45e-09;13!UBERON:0001041;7.28e-07;30 | |||
|ontology_enrichment_disease=DOID:305!2.60e-14!106;DOID:0050687!5.25e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004921!8.93e-10!129;UBERON:0004185!8.93e-10!129;UBERON:0004119!2.45e-09!169;UBERON:0000925!2.45e-09!169;UBERON:0006595!2.45e-09!169;UBERON:0001007!5.52e-09!155;UBERON:0001555!5.52e-09!155;UBERON:0007026!5.52e-09!155;UBERON:0005911!3.11e-08!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;2.96e-19;31!UBERON:0002330;2.96e-19;31!UBERON:0002107;2.10e-16;19!UBERON:0006925;2.10e-16;19!UBERON:0001736;9.12e-14;1!UBERON:0002423;1.83e-12;25!UBERON:0002368;9.35e-11;33!UBERON:0001044;3.14e-09;6!UBERON:0003293;3.14e-09;6!UBERON:0003294;3.14e-09;6!UBERON:0010047;3.14e-09;6!UBERON:0003408;3.14e-09;6!UBERON:0000167;3.14e-09;6!UBERON:0000949;9.88e-09;43!UBERON:0001041;1.43e-08;14!UBERON:0001007;1.95e-08;81!UBERON:0002530;7.58e-08;57!UBERON:0000007;9.86e-08;2!UBERON:0001829;1.59e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002365,3.30e-19,31;UBERON:0002330,3.30e-19,31;UBERON:0002107,1.97e-16,19;UBERON:0006925,1.97e-16,19;UBERON:0008836,1.97e-16,19;UBERON:0008835,3.44e-14,22;UBERON:0003894,3.44e-14,22;UBERON:0001736,4.53e-14,1;UBERON:0006298,4.53e-14,1;UBERON:0009854,1.43e-13,23;UBERON:0002530,8.16e-13,59;UBERON:0002368,1.32e-12,35;UBERON:0007499,1.75e-12,25;UBERON:0009497,1.75e-12,25;UBERON:0000015,1.75e-12,25;UBERON:0002423,1.75e-12,25;UBERON:0006235,1.75e-12,25;UBERON:0004161,1.75e-12,25;UBERON:0009856,5.29e-12,26;UBERON:0001041,1.23e-10,87;UBERON:0000949,9.93e-10,45;UBERON:0001044,2.45e-09,6;UBERON:0003293,2.45e-09,6;UBERON:0003294,2.45e-09,6;UBERON:0010047,2.45e-09,6;UBERON:0000167,2.45e-09,6;UBERON:0004921,2.86e-09,118;UBERON:0001007,5.97e-09,145;UBERON:0001555,5.97e-09,145;UBERON:0007026,5.97e-09,145;UBERON:0004119,5.56e-08,160;UBERON:0000925,5.56e-08,160;UBERON:0006595,5.56e-08,160;UBERON:0000007,9.87e-08,2;UBERON:0001829,1.12e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0.232401601740905,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0.954053754535364,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0.530119073285941,0.116193942869518,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,1.96565443335525,4.72631925345123,0,0.491953754172454,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0,0,0,0,0,0,1.13345112812495,0.0915694648183434,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0.71623345421307,0,0.307160702099232,0.994147647766298,0.140669416410513,0,0,0,0,0,0.755798243562828,0,0,0,0.0898683511473268,0.895105873378046,0,0,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0.341380344856499,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0.69169171316418,0.359030577639089,0.217294743844016,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0,0,0.19606253431774,0,0,0,0.421996129056054,0.326465616318295,0.141353071433941,0,0.995261931078505,0.530745387020035,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0.0870592065804026,0.34945333648406,0,0.290268993867255,0.146178634172371,0.410577285266046,0,0,0,0,0,0,0,0,0.213452994739353,0,1.58499458869517,0.114536596165916,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,1.02418136999391,0.824158583811665,1.14586024552114,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,1.75862680413699,0,0,0.26446520348538,0,0,0,0.157204305099666,0.828478110694391,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0.110929051536852,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0.172214979660816,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,1.27592034051333,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0.781514011233092,0.261906694481422,0,0.443568258651136,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,0.255524855279191,0,0,2.42786241694653,0.455324382702595,0.354809480650555,0,0,0,0,0.118193840883968,0.333694205676207,0.078493092850514,0,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0,0,0,0,0,0.487671699929078,0,0,0,0,0,0.198950775161368,0,0.22589216407792,0,1.35866559210006,1.00326405540328,0.218559560503957,0,0,0.471353094203252,0,0,0,0,0,0,0,0,0,0.240724100067505,0,1.83491713361816,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.713921808193872,0.26721740526556,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0.190941474834495,0,0,0,0,0.143444410785353,0,0.0814032686109745,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0.232401601740905,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0.954053754535364,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0.530119073285941,0.116193942869518,0,0.504641701751257,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,1.96565443335525,4.72631925345123,0,0.491953754172454,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764628819135115,0.831076008928724,0,0,0,0,0,0,1.13345112812495,0.0915694648183434,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0.71623345421307,0,0.307160702099232,0.994147647766298,0.140669416410513,0,0,0,0,0,0.755798243562828,0,0,0,0.0898683511473268,0.895105873378046,0,0,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0.341380344856499,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0.69169171316418,0.359030577639089,0.217294743844016,0.31900115973192,0.0915975934018623,1.06606955203727,0,0,0,0,0.19606253431774,0,0,0,0.421996129056054,0.326465616318295,0.141353071433941,0,0.995261931078505,0.530745387020035,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0,0,0.789168805698781,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0.0870592065804026,0.34945333648406,0,0.290268993867255,0.146178634172371,0.410577285266046,0,0,0,0,0,0,0,0,0.213452994739353,0,1.58499458869517,0.114536596165916,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,1.02418136999391,0.824158583811665,1.14586024552114,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,1.75862680413699,0,0,0.26446520348538,0,0,0,0.157204305099666,0.828478110694391,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0.110929051536852,0,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0.172214979660816,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,1.27592034051333,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0.781514011233092,0.261906694481422,0,0.443568258651136,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,0.255524855279191,0,0,2.42786241694653,0.455324382702595,0.354809480650555,0,0,0,0,0.118193840883968,0.333694205676207,0.078493092850514,0,0,0,0,0,0.142953088353313,0.158013611732727,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0,0,0,0,0,0.487671699929078,0,0,0,0,0,0.198950775161368,0,0.22589216407792,0,1.35866559210006,1.00326405540328,0.218559560503957,0,0,0.471353094203252,0,0,0,0,0,0,0,0,0,0.240724100067505,0,1.83491713361816,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.713921808193872,0.26721740526556,0.275684698604535,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0.190941474834495,0,0,0,0,0.143444410785353,0,0.0814032686109745,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p6@LARP1B | |||
}} | }} |
Latest revision as of 02:41, 25 September 2015
Short description: | p6@LARP1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LARP1B_5end |
Coexpression cluster: | NA |
Association with transcript: | -473bp_to_ENST00000326639_5end |
EntrezGene: | LARP1B |
HGNC: | 24704 |
UniProt: | Q659C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.16e-17 | 12 |
endodermal cell | 2.03e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
exocrine gland | 3.30e-19 | 31 |
exocrine system | 3.30e-19 | 31 |
liver | 1.97e-16 | 19 |
digestive gland | 1.97e-16 | 19 |
liver bud | 1.97e-16 | 19 |
hepatic diverticulum | 3.44e-14 | 22 |
liver primordium | 3.44e-14 | 22 |
submandibular gland | 4.53e-14 | 1 |
submandibular gland primordium | 4.53e-14 | 1 |
digestive tract diverticulum | 1.43e-13 | 23 |
gland | 8.16e-13 | 59 |
endocrine gland | 1.32e-12 | 35 |
epithelial sac | 1.75e-12 | 25 |
epithelium of foregut-midgut junction | 1.75e-12 | 25 |
anatomical boundary | 1.75e-12 | 25 |
hepatobiliary system | 1.75e-12 | 25 |
foregut-midgut junction | 1.75e-12 | 25 |
septum transversum | 1.75e-12 | 25 |
sac | 5.29e-12 | 26 |
foregut | 1.23e-10 | 87 |
endocrine system | 9.93e-10 | 45 |
saliva-secreting gland | 2.45e-09 | 6 |
gland of oral region | 2.45e-09 | 6 |
gland of foregut | 2.45e-09 | 6 |
oral gland | 2.45e-09 | 6 |
oral cavity | 2.45e-09 | 6 |
subdivision of digestive tract | 2.86e-09 | 118 |
digestive system | 5.97e-09 | 145 |
digestive tract | 5.97e-09 | 145 |
primitive gut | 5.97e-09 | 145 |
endoderm-derived structure | 5.56e-08 | 160 |
endoderm | 5.56e-08 | 160 |
presumptive endoderm | 5.56e-08 | 160 |
pituitary gland | 9.87e-08 | 2 |
major salivary gland | 1.12e-07 | 2 |