Swissregulon:HOX(A6,A7,B6,B7).p1: Difference between revisions
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{{SwissregulonMotif | {{SwissregulonMotif | ||
|associated_transcription_factors=0.930:3216:HOXB6:homeobox B6::NM_018952:;0.930:3204:HOXA7:homeobox A7::NM_006896:;0.912:3217:HOXB7:homeobox B7::NM_004502:;0.912:3203:HOXA6:homeobox A6::NM_024014: | |||
|datasource=http://www.swissregulon.unibas.ch/ | |datasource=http://www.swissregulon.unibas.ch/ | ||
|gostat_on_mara_hg19=GO:0032501!multicellular organismal process!2.93723134179921e-10!64805;7080;4281;2570;145258;1756;10324;9350;388585;22999;3206;57626;169522;9152;3218;6091;5449;4286;4488;1621;5080;1638$GO:0007275!multicellular organismal development!0.000148046522309654!57626;3206;7080;4281;3218;6091;145258;5449;4286;4488;1756;5080;9350;1638;388585$GO:0007389!pattern specification process!0.000207668204519474!7080;4281;5080;9350;3218$GO:0021798!forebrain dorsal/ventral pattern formation!0.000254059083693099!7080;5080$GO:0009653!anatomical structure morphogenesis!0.000254059083693099!57626;7080;4281;1755;6091;145258;5449;4488;9350;5080$GO:0048856!anatomical structure development!0.000372256644577251!57626;7080;4281;1755;6091;145258;5449;4488;1756;5080;9350;1638;388585$GO:0003002!regionalization!0.000691656884214681!7080;5080;9350;3218$GO:0032502!developmental process!0.000828336647162156!7080;4281;145258;1756;9350;388585;3206;57626;1755;3218;6091;4286;5449;4488;1638;5080$GO:0021871!forebrain regionalization!0.000843539633736953!7080;5080$GO:0035270!endocrine system development!0.000928205718164742!5449;7080;5080$GO:0048699!generation of neurons!0.00126297687285113!6091;57626;7080;5080;388585$GO:0042438!melanin biosynthetic process!0.00126297687285113!7306;1638$GO:0045009!chitosome!0.00126297687285113!7306;1638$GO:0033162!melanosome membrane!0.00126297687285113!7306;1638$GO:0006583!melanin biosynthetic process from tyrosine!0.00126297687285113!7306;1638$GO:0022008!neurogenesis!0.00139463471395362!6091;57626;7080;5080;388585$GO:0030900!forebrain development!0.00139463471395362!5449;7080;5080$GO:0048732!gland development!0.00139463471395362!5449;7080;5080$GO:0006582!melanin metabolic process!0.00139463471395362!7306;1638$GO:0007420!brain development!0.00153285989736855!5449;57626;7080;5080$GO:0009952!anterior/posterior pattern formation!0.00206097853302989!5080;9350;3218$GO:0048306!calcium-dependent protein binding!0.00206097853302989!9478;1755$GO:0021983!pituitary gland development!0.00288100569706783!5449;5080$GO:0045665!negative regulation of neuron differentiation!0.00288100569706783!5080;388585$GO:0021536!diencephalon development!0.00331585982578009!5449;5080$GO:0005515!protein binding!0.00460662674166633!4969;7080;7306;9478;64397;6154;10516;4281;1756;1871;10324;9350;22999;57626;143162;169522;1755;6091;5449;288;4053;4488;54674;84665;5080$GO:0048513!organ development!0.00469702021699859!57626;7080;5449;1756;4488;1638;5080;388585$GO:0006570!tyrosine metabolic process!0.00469702021699859!7306;1638$GO:0043229!intracellular organelle!0.00469946028531247!7103;4969;7080;7306;9478;6154;4281;51350;145258;22807;1756;1871;10324;388585;3206;57626;143162;1755;23466;3218;5449;4286;288;4488;84665;1621;5080;1638$GO:0043226!organelle!0.00469946028531247!7103;4969;7080;7306;9478;6154;4281;51350;145258;22807;1756;1871;10324;388585;3206;57626;143162;1755;23466;3218;5449;4286;288;4488;84665;1621;5080;1638$GO:0043565!sequence-specific DNA binding!0.00469946028531247!145258;5449;3206;7080;4488;5080;3218$GO:0030182!neuron differentiation!0.00469946028531247!6091;57626;5080;388585$GO:0007601!visual perception!0.00540480878459586!22999;169522;5080;2570$GO:0050953!sensory perception of light stimulus!0.00540480878459586!22999;169522;5080;2570$GO:0009798!axis specification!0.00540480878459586!5080;9350$GO:0003008!system process!0.00540480878459586!22999;4286;1756;169522;1621;5080;10324;2570;9152$GO:0007417!central nervous system development!0.00622680210704352!5449;57626;7080;5080$GO:0048731!system development!0.00696260863268844!57626;7080;6091;5449;1756;4488;1638;5080;388585$GO:0030659!cytoplasmic vesicle membrane!0.00760209860349238!7306;1755;1638$GO:0044433!cytoplasmic vesicle part!0.00783210830022799!7306;1755;1638$GO:0007399!nervous system development!0.00842353595609767!6091;5449;57626;7080;5080;388585$GO:0012506!vesicle membrane!0.00865850325271081!7306;1755;1638$GO:0007369!gastrulation!0.00865850325271081!145258;9350$GO:0045664!regulation of neuron differentiation!0.00903228434480863!5080;388585$GO:0005507!copper ion binding!0.00903228434480863!7306;1621;1638$GO:0009953!dorsal/ventral pattern formation!0.0101700804230734!7080;5080$GO:0001709!cell fate determination!0.010555546787955!5080;388585$GO:0007268!synaptic transmission!0.010555546787955!22999;1621;2570;9152$GO:0005856!cytoskeleton!0.0111996222002006!57626;9478;143162;4281;51350;288;1756;10324$GO:0031175!neurite development!0.0123052227246667!6091;57626;5080$GO:0045944!positive regulation of transcription from RNA polymerase II promoter!0.0131237848224673!5449;7080;5080$GO:0001764!neuron migration!0.0140382952661786!7080;5080$GO:0003700!transcription factor activity!0.0140382952661786!3206;7080;3218;145258;5449;4488;1871;5080$GO:0019226!transmission of nerve impulse!0.0140382952661786!22999;1621;2570;9152$GO:0046148!pigment biosynthetic process!0.0140382952661786!7306;1638$GO:0050767!regulation of neurogenesis!0.0140382952661786!6091;5080$GO:0021902!commitment of a neuronal cell to a specific type of neuron in the forebrain!0.0140382952661786!5080$GO:0021877!forebrain neuron fate commitment!0.0140382952661786!5080$GO:0042583!chromaffin granule!0.0140382952661786!1621$GO:0021680!cerebellar Purkinje cell layer development!0.0140382952661786!57626$GO:0030670!phagocytic vesicle membrane!0.0140382952661786!1755$GO:0001621!platelet ADP receptor activity!0.0140382952661786!64805$GO:0043152!induction of bacterial agglutination!0.0140382952661786!1755$GO:0048666!neuron development!0.0140382952661786!6091;57626;5080$GO:0016023!cytoplasmic membrane-bound vesicle!0.0150991819860798!7306;1621;1755;1638$GO:0044456!synapse part!0.0154335983685376!22999;9478;2570$GO:0031988!membrane-bound vesicle!0.0154335983685376!7306;1621;1755;1638$GO:0042440!pigment metabolic process!0.0154700242093283!7306;1638$GO:0044421!extracellular region part!0.017165302778527!3026;4969;4053;1756;10516;9350$GO:0009072!aromatic amino acid family metabolic process!0.0187814220030514!7306;1638$GO:0050877!neurological system process!0.0190562051336203!22999;4286;169522;1621;5080;2570;9152$GO:0006725!aromatic compound metabolic process!0.02039889221068!7306;1621;1638$GO:0006355!regulation of transcription, DNA-dependent!0.0206220491542159!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0044464!cell part!0.0213477131938333!64805;7080;7306;9478;10516;619189;22807;3206;169522;143162;374462;1755;3218;6091;5449;288;4488;84665;54674;5080;221074;7103;4969;64397;6154;51350;4281;2570;145258;1756;1871;10324;388585;22999;57626;9376;9152;23466;4286;1621;1638;2823$GO:0019748!secondary metabolic process!0.0216028137643517!7306;1638$GO:0005887!integral to plasma membrane!0.0216028137643517!6091;7103;9376;169522;2570;9152;2823$GO:0021872!generation of neurons in the forebrain!0.0216028137643517!5080$GO:0006858!extracellular transport!0.0216028137643517!4053$GO:0015375!glycine:sodium symporter activity!0.0216028137643517!9152$GO:0022612!gland morphogenesis!0.0216028137643517!5080$GO:0021879!forebrain neuron differentiation!0.0216028137643517!5080$GO:0019731!antibacterial humoral response!0.0216028137643517!1755$GO:0007435!salivary gland morphogenesis!0.0216028137643517!5080$GO:0006351!transcription, DNA-dependent!0.0218686594789386!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0032774!RNA biosynthetic process!0.0218686594789386!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0031226!intrinsic to plasma membrane!0.0218686594789386!6091;7103;9376;169522;2570;9152;2823$GO:0005578!proteinaceous extracellular matrix!0.0221711026631407!4969;4053;1756;10516$GO:0048858!cell projection morphogenesis!0.0221711026631407!6091;57626;5080$GO:0032990!cell part morphogenesis!0.0221711026631407!6091;57626;5080$GO:0030030!cell projection organization and biogenesis!0.0221711026631407!6091;57626;5080$GO:0031410!cytoplasmic vesicle!0.0224304662839183!7306;1621;1755;1638$GO:0031982!vesicle!0.0235168224186918!7306;1621;1755;1638$GO:0044424!intracellular part!0.0258427942056191!7103;4969;7080;7306;9478;64397;6154;4281;51350;145258;22807;1756;1871;10324;388585;3206;57626;143162;1755;23466;3218;5449;4286;288;4488;84665;1621;5080;1638$GO:0045596!negative regulation of cell differentiation!0.0258427942056191!5080;388585$GO:0045449!regulation of transcription!0.0258427942056191!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0045893!positive regulation of transcription, DNA-dependent!0.0258427942056191!5449;7080;5080$GO:0008285!negative regulation of cell proliferation!0.0258427942056191!5449;5080;9350$GO:0004167!dopachrome isomerase activity!0.0258427942056191!1638$GO:0042668!auditory receptor cell fate determination!0.0258427942056191!388585$GO:0008046!axon guidance receptor activity!0.0258427942056191!6091$GO:0021984!adenohypophysis development!0.0258427942056191!5449$GO:0005294!neutral L-amino acid secondary active transmembrane transporter activity!0.0258427942056191!9152$GO:0045335!phagocytic vesicle!0.0258427942056191!1755$GO:0019730!antimicrobial humoral response!0.0258427942056191!1755$GO:0016070!RNA metabolic process!0.0267902539063854!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;1996;5080;388585$GO:0016477!cell migration!0.0272918338010761!7080;5080;9350$GO:0045165!cell fate commitment!0.0274299802713637!5080;388585$GO:0009790!embryonic development!0.0274299802713637!145258;4488;9350$GO:0050793!regulation of developmental process!0.0275006097879552!6091;5080;388585$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0275040717703607!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0044459!plasma membrane part!0.0275040717703607!22999;7103;9376;169522;2570;9152;6091;1756;2823$GO:0007178!transmembrane receptor protein serine/threonine kinase signaling pathway!0.0298416959245387!4053;9350$GO:0051093!negative regulation of developmental process!0.0298416959245387!5080;388585$GO:0006836!neurotransmitter transport!0.0298416959245387!22999;9152$GO:0042074!cell migration involved in gastrulation!0.0298416959245387!9350$GO:0060120!inner ear receptor cell fate commitment!0.0298416959245387!388585$GO:0007431!salivary gland development!0.0298416959245387!5080$GO:0015187!glycine transmembrane transporter activity!0.0298416959245387!9152$GO:0043034!costamere!0.0298416959245387!1756$GO:0009912!auditory receptor cell fate commitment!0.0298416959245387!388585$GO:0016043!cellular component organization and biogenesis!0.0313572941125021!22999;57626;4281;51350;23466;6091;288;5449;4053;1871;5080$GO:0006350!transcription!0.0322922621955374!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0048770!pigment granule!0.0322922621955374!7306;1638$GO:0042470!melanosome!0.0322922621955374!7306;1638$GO:0007423!sensory organ development!0.0341457559714334!5080;388585$GO:0010468!regulation of gene expression!0.0341457559714334!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0009950!dorsal/ventral axis specification!0.0341457559714334!5080$GO:0043043!peptide biosynthetic process!0.0341457559714334!1756$GO:0014069!postsynaptic density!0.0341457559714334!9478$GO:0001515!opioid peptide activity!0.0341457559714334!64397$GO:0016855!racemase and epimerase activity, acting on amino acids and derivatives!0.0341457559714334!9152$GO:0045941!positive regulation of transcription!0.0360063223664716!5449;7080;5080$GO:0043228!non-membrane-bound organelle!0.0368054340322829!57626;9478;6154;143162;4281;51350;23466;288;1756;10324$GO:0043232!intracellular non-membrane-bound organelle!0.0368054340322829!57626;9478;6154;143162;4281;51350;23466;288;1756;10324$GO:0045935!positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0387532374851965!5449;7080;5080$GO:0030666!endocytic vesicle membrane!0.0388690138267446!1755$GO:0021695!cerebellar cortex development!0.0388690138267446!57626$GO:0042462!eye photoreceptor cell development!0.0388690138267446!5080$GO:0031323!regulation of cellular metabolic process!0.0412687808126351!3206;7080;3218;23466;145258;5449;4286;4488;22807;1871;5080;388585$GO:0007167!enzyme linked receptor protein signaling pathway!0.0413583258980303!4053;64397;9350$GO:0000267!cell fraction!0.0418326275254791!9376;64397;10516;1621;1638$GO:0001609!adenosine receptor activity, G-protein coupled!0.0429597927240961!64805$GO:0001754!eye photoreceptor cell differentiation!0.0429597927240961!5080$GO:0021543!pallium development!0.0429597927240961!5080$GO:0030878!thyroid gland development!0.0429597927240961!7080$GO:0016563!transcription activator activity!0.0429597927240961!5449;4286;7080$GO:0003677!DNA binding!0.0445708477407362!3206;7080;3218;145258;5449;4286;22807;4488;1871;5080;388585$GO:0022037!metencephalon development!0.0454892273793591!57626$GO:0003730!mRNA 3'-UTR binding!0.0454892273793591!1996$GO:0035272!exocrine system development!0.0454892273793591!5080$GO:0016079!synaptic vesicle exocytosis!0.0454892273793591!22999$GO:0007628!adult walking behavior!0.0454892273793591!57626$GO:0042461!photoreceptor cell development!0.0454892273793591!5080$GO:0021549!cerebellum development!0.0454892273793591!57626$GO:0030318!melanocyte differentiation!0.0454892273793591!4286$GO:0050931!pigment cell differentiation!0.0454892273793591!4286$GO:0004500!dopamine beta-monooxygenase activity!0.0454892273793591!1621$GO:0007600!sensory perception!0.0459841833006362!22999;4286;169522;5080;2570$GO:0007409!axonogenesis!0.0463344186024573!6091;5080 | |||
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| |||
|name=HOX{A6,A7,B6,B7}.p1 | |name=HOX{A6,A7,B6,B7}.p1 | ||
|weight_matrix=NA:HOX{A6,A7,B6,B7}.p1;PO:A:C:G:T;01:0:0:0:36.472043;02:36.472043:0:0:0;03:36.472043:0:0:0;04:0:0:0:36.472043 | |weight_matrix=NA:HOX{A6,A7,B6,B7}.p1;PO:A:C:G:T;01:0:0:0:36.472043;02:36.472043:0:0:0;03:36.472043:0:0:0;04:0:0:0:36.472043 | ||
}} | }} | ||
Latest revision as of 19:24, 16 April 2012
recognized by
- HOXB6 ( EntrezGene:3216 )
- HOXA7 ( EntrezGene:3204 )
- HOXB7 ( EntrezGene:3217 )
- HOXA6 ( EntrezGene:3203 )
(data source: http://www.swissregulon.unibas.ch/)
| Motif matrix | |||||||||||||||||||||||||||
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Motif Activities (MARA) on Phase1 data
hg19
| Chart |
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Sample of clicked point: |
mm9
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Sample of clicked point: |
GOStat results on predicted Motif target
| hg19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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