FFCP PHASE1:Hg19::chr10:81967174..81967212,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=439990 | |EntrezGene=439990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-253bp_to_ENST00000422847,NR_038464,uc001kbv.2_5end | |association_with_transcript=-253bp_to_ENST00000422847,NR_038464,uc001kbv.2_5end | ||
|cluster_id=chr10:81967174..81967212,+ | |||
|description=CAGE_peak_1_at_LOC439990_5end | |description=CAGE_peak_1_at_LOC439990_5end | ||
|id=chr10:81967174..81967212,+ | |id=chr10:81967174..81967212,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.14e-18!254;CL:0000055!5.16e-13!180;CL:0000220!5.11e-11!246;CL:0002321!1.53e-10!248;CL:0000222!2.06e-10!119;CL:0000548!6.63e-10!679;CL:0000004!6.63e-10!679;CL:0000255!6.63e-10!679;CL:0000012!2.44e-09!682;CL:0000187!4.41e-09!54;CL:0000680!4.76e-09!57;CL:0000056!4.76e-09!57;CL:0000355!4.76e-09!57;CL:0000183!6.46e-09!59;CL:0000192!1.23e-08!42;CL:0000514!1.23e-08!42;CL:0000077!2.14e-08!19;CL:0000057!1.45e-07!75;CL:0000076!2.50e-07!62;CL:0000393!3.92e-07!60;CL:0000211!3.92e-07!60 | |ontology_enrichment_celltype=CL:0000066!1.14e-18!254;CL:0000055!5.16e-13!180;CL:0000220!5.11e-11!246;CL:0002321!1.53e-10!248;CL:0000222!2.06e-10!119;CL:0000548!6.63e-10!679;CL:0000004!6.63e-10!679;CL:0000255!6.63e-10!679;CL:0000012!2.44e-09!682;CL:0000187!4.41e-09!54;CL:0000680!4.76e-09!57;CL:0000056!4.76e-09!57;CL:0000355!4.76e-09!57;CL:0000183!6.46e-09!59;CL:0000192!1.23e-08!42;CL:0000514!1.23e-08!42;CL:0000077!2.14e-08!19;CL:0000057!1.45e-07!75;CL:0000076!2.50e-07!62;CL:0000393!3.92e-07!60;CL:0000211!3.92e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.57e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-15,253;CL:0000077,3.59e-09,19;CL:0000192,4.17e-08,43;CL:0000514,4.17e-08,43;CL:0000187,6.03e-07,55;CL:0000076,7.33e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.92e-16!106;DOID:0050687!3.99e-11!143;DOID:1749!2.20e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.15e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.52e-19,106;DOID:0050687,1.13e-14,143;DOID:1749,1.34e-10,14;DOID:14566,4.64e-09,239;DOID:162,8.45e-09,235 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.10e-20!238;UBERON:0009142!1.10e-20!238;UBERON:0000481!5.21e-20!347;UBERON:0002100!2.93e-18!216;UBERON:0004119!9.47e-17!169;UBERON:0000925!9.47e-17!169;UBERON:0006595!9.47e-17!169;UBERON:0001007!3.86e-16!155;UBERON:0001555!3.86e-16!155;UBERON:0007026!3.86e-16!155;UBERON:0005256!5.33e-16!143;UBERON:0000490!5.89e-14!138;UBERON:0000077!1.61e-11!130;UBERON:0004921!3.81e-11!129;UBERON:0004185!3.81e-11!129;UBERON:0003914!3.78e-10!118;UBERON:0000475!4.87e-10!365;UBERON:0000926!1.41e-09!448;UBERON:0004120!1.41e-09!448;UBERON:0006603!1.41e-09!448;UBERON:0005911!1.83e-09!82;UBERON:0001048!3.03e-09!168;UBERON:0000119!3.05e-09!312;UBERON:0000483!9.15e-09!309;UBERON:0005177!1.12e-08!107;UBERON:0000466!1.78e-08!126;UBERON:0002385!4.35e-08!63;UBERON:0001015!4.35e-08!63;UBERON:0000383!4.35e-08!63;UBERON:0000914!6.17e-08!83;UBERON:0002329!6.17e-08!83;UBERON:0003077!6.17e-08!83;UBERON:0003059!6.17e-08!83;UBERON:0007282!6.17e-08!83;UBERON:0009618!6.17e-08!83;UBERON:0007285!6.17e-08!83;UBERON:0000486!8.67e-08!82;UBERON:0001134!9.48e-08!61;UBERON:0002036!9.48e-08!61;UBERON:0003082!9.48e-08!61;UBERON:0003929!1.50e-07!54;UBERON:0000477!1.90e-07!286;UBERON:0004290!2.66e-07!70;UBERON:0004923!4.13e-07!57;UBERON:0000064!4.19e-07!219;UBERON:0000464!6.97e-07!104;UBERON:0003064!7.33e-07!37 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.26e-10,199;UBERON:0004119,7.17e-10,160;UBERON:0000925,7.17e-10,160;UBERON:0006595,7.17e-10,160;UBERON:0001007,1.43e-09,145;UBERON:0001555,1.43e-09,145;UBERON:0007026,1.43e-09,145;UBERON:0003104,1.07e-08,160;UBERON:0009142,1.07e-08,160;UBERON:0005256,7.38e-08,122;UBERON:0005911,9.03e-08,82;UBERON:0000490,1.20e-07,148 | |||
|phase1_expression=1.2717486548939,0.214100523890983,2.39622486963151,0,1.78784437770915,0.872338524100369,0,0,1.04474251279935,1.96587149201207,3.48900583986214,2.62129646556207,1.58260186937072,2.47532705920093,1.98838425436749,0,1.20538905604795,2.19093027116212,0.975865597581014,1.96993692922861,2.24400760368678,0,0.286235987131057,1.64249310087461,0.627713197974014,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,2.81297636055767,2.89151321907653,2.00535164254356,2.17269778441236,0.795285947051099,0,1.89069634328136,2.66075276955077,1.75669571386252,0.589405839739707,1.45718115317017,1.48313777113772,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,1.69592382577203,1.67799774483962,0,0.626984899610432,0,0.35576626268671,0,0,0.760272105718513,0,0,0,0.357198913136319,0.22452937262617,0.225222960966644,4.5994991239765,0.949265659568129,0.183201743930407,0,0,0,0.496971951695318,2.02608818663328,2.51577443545116,2.0078563452417,1.77334191099179,2.80338800071154,0,0.74000264525148,2.17847724779836,0.134710672069688,0.817309515567294,0.151357427644931,0,4.21778577300834,1.24864030732128,1.1409436430889,0.896692083310806,0.23486899728753,0.485618833104395,0.561803226808994,3.0623125688234,1.71968044236475,2.6864703105699,0,0.741800787835671,0,0.718618141816238,1.68336113954066,1.25118519871964,1.6623846929051,0.877955241761676,0.919463387397059,1.20190447125277,1.47461838108027,0.89694817844431,0,1.05965950579781,1.20036438433761,0.515262646192195,0.257640540045629,2.04728541964749,1.0126579934476,0.389748020644795,0.504867548488229,0.828449087780694,2.42469085228218,1.42003837006646,0.403008392910561,2.03472710772585,2.12586938479627,0.272746120590835,1.14721838155602,0,0,0.116193942869518,0.310983165046111,0,0,1.56449532329816,0,0,0,0.721879481669586,2.60274960087657,2.02301628093722,0.964044119533928,2.09558548191549,1.52515610864684,2.13543557199987,2.42696354688296,2.15843611637881,1.53898862778556,0.738155454624648,2.80483547606892,5.7620361586396,2.94017422771084,2.53510069643662,0,0.590789906681404,0,7.13332943550059,0.857839051492628,0.109750285408626,0,0,0.185176890317059,1.95484983186195,0,2.88662684050547,0.927443239800615,1.76113041353732,0.288732895522148,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,1.14596527667483,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0.897048674762886,4.3596006883328,1.24675085895615,1.55126058909333,3.57656445851882,0.845302752556,2.12750493267896,3.12022310734098,0.514414748524284,1.41849132023278,2.1313774321288,0.285955987316295,1.62786481617433,0.823240336780769,1.62868092146868,0.355391948742546,0.791951872933429,5.42590878707255,5.22920075160176,5.19859554146697,0,0,0,0.958499421966331,2.29723871668228,1.42636905040718,0.723906533337896,0.821905290201534,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,2.00068208423871,1.35632511849868,0.831883446123229,0.713715955188647,0.946214490203608,1.05427273493442,0.300946099727719,4.5481500811197,1.03473071292505,0,2.02806085395873,3.30157734978715,0.391602314925481,0.343143423810856,0,0,0,0.909382714338778,0,0.907170879989041,0.744323423456331,0.767309866440312,0.280660094433074,2.43464383585832,1.53512174720011,0.321707842287215,1.48418066444991,1.23367755042124,1.59805552781814,2.62806899244189,3.63478100428535,2.09178681227927,7.00984807631409,1.00253235151642,2.4861867012692,2.52591785962135,1.63882051206045,1.70461739447251,2.25599806453706,1.69433741629712,2.35304930753057,1.46139224653261,1.37217117560738,0,0.170093705276516,0.215915916102139,0,0.812839312631559,1.50506932156456,0.764628819135115,0.831076008928724,2.68649705666614,0,0,4.87255237721139,4.59220503979588,1.95227036798582,1.23649213977267,1.37354197227515,1.89771849817352,0,0,4.82051789532479,0.48335359146061,0.924291702687866,0.921022048356777,0.275673144969061,2.47066563197029,1.0151168573996,0.852266274161009,0.623224249527161,1.81813406897076,1.34533047155574,1.53135254993501,1.31505115112215,1.39453664789186,0,0.6970372701606,3.08033580176089,1.59691809095107,2.60979897622522,1.11194531462352,2.57624796135584,0.372158369359667,1.89827654831236,0.762520775695299,1.02359116524534,2.1396949401696,3.81843897511124,3.92474320099615,0.899362287916574,1.09814811894422,1.53156123049392,3.03273722359974,0,0.421258456238981,1.95053495635836,3.65570234446927,1.05650146756755,1.9109987597118,1.83827061539827,6.78048699721457,2.75682671773062,1.99031692572366,2.19225442626881,0.578775534266688,3.9353685122798,2.84074527747786,1.8589409885985,1.69017361519345,1.43411352204052,0.687743287091848,3.5667105148125,2.83808851256478,2.53329162357197,2.96365403663912,2.65631221636001,1.04980416073495,0.673554789078584,0.670302275535787,1.0889098486132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| ||
|short_description=p1@LOC439990 | |short_description=p1@LOC439990 | ||
}} | }} |
Latest revision as of 15:05, 19 September 2015
Short description: | p1@LOC439990 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC439990_5end |
Coexpression cluster: | NA |
Association with transcript: | -253bp_to_ENST00000422847, NR_038464, uc001kbv.2_5end |
EntrezGene: | LOC439990 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.71e-15 | 253 |
mesothelial cell | 3.59e-09 | 19 |
smooth muscle cell | 4.17e-08 | 43 |
smooth muscle myoblast | 4.17e-08 | 43 |
muscle cell | 6.03e-07 | 55 |
squamous epithelial cell | 7.33e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.26e-10 | 199 |
endoderm-derived structure | 7.17e-10 | 160 |
endoderm | 7.17e-10 | 160 |
presumptive endoderm | 7.17e-10 | 160 |
digestive system | 1.43e-09 | 145 |
digestive tract | 1.43e-09 | 145 |
primitive gut | 1.43e-09 | 145 |
mesenchyme | 1.07e-08 | 160 |
entire embryonic mesenchyme | 1.07e-08 | 160 |
trunk mesenchyme | 7.38e-08 | 122 |
endo-epithelium | 9.03e-08 | 82 |
unilaminar epithelium | 1.20e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.52e-19 | 106 |
cell type cancer | 1.13e-14 | 143 |
squamous cell carcinoma | 1.34e-10 | 14 |
disease of cellular proliferation | 4.64e-09 | 239 |
cancer | 8.45e-09 | 235 |