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|id=DOID:3165
|id=DOID:3165
|name=skin benign  neoplasm
|name=skin benign  neoplasm
|namespace=
|namespace=disease_ontology
|def=
|def=
|xref=
|xref=MSH:D012878;;NCI:C3372;;SNOMEDCT_2010_1_31:126488004;;SNOMEDCT_2010_1_31:363230005;;UMLS_CUI:C0037286
|is_a=DOID:0060121
|is_a=DOID:0060121
|synonym="neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:126488004];;"neoplasm of skin by site" EXACT [SNOMEDCT_2005_07_31:363230005];;"skin neoplasm" EXACT [CSP2005:2020-0536];;"tumor of the skin" EXACT [NCI2004_11_17:C3372]
|synonym="neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:126488004];;"neoplasm of skin by site" EXACT [SNOMEDCT_2005_07_31:363230005];;"skin neoplasm" EXACT [CSP2005:2020-0536];;"tumor of the skin" EXACT [NCI2004_11_17:C3372]
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|preceded_by=
}}
}}

Latest revision as of 16:32, 26 June 2012

Name:skin benign neoplasm
Namespace:disease_ontology
Xrefs:
links:

MSH:D012878
NCI:C3372
SNOMEDCT_2010_1_31:126488004
SNOMEDCT_2010_1_31:363230005

UMLS_CUI:C0037286
Synonyms: "neoplasm of skin (disorder)" EXACT [SNOMEDCT_2005_07_31:126488004]
"neoplasm of skin by site" EXACT [SNOMEDCT_2005_07_31:363230005]
"skin neoplasm" EXACT [CSP2005:2020-0536]
"tumor of the skin" EXACT [NCI2004_11_17:C3372]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060121(integumentary system benign neoplasm)



Children


is a:DOID:2438 (dermis tumor)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)

Mouse (Mus musculus)

  • 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3165 (skin benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_4bf1fba16be651fd4dd742fe244bd26bp@chr11:101742272..101742276, -
5.42e-195FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_4bf1fba16be651fd4dd742fe244bd26bp1@CU687665
5.42e-195FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_4bf1fba16be651fd4dd742fe244bd26bp@chr11:101742272..101742276, -
5.42e-195FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_4bf1fba16be651fd4dd742fe244bd26bp1@CU687665
9.37e-99FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_6ef9ca8d48531370a9d2026cef54e302p@chr18:71197490..71197495, -
9.37e-99FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_6ef9ca8d48531370a9d2026cef54e302p@chr18:71197490..71197495, -
9.37e-99FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_6ef9ca8d48531370a9d2026cef54e302p@chr11:81551043..81551054, -
9.37e-99FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_6ef9ca8d48531370a9d2026cef54e302p@chr16:51670868..51670880, -
9.37e-99FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_6ef9ca8d48531370a9d2026cef54e302p@chr5:14034644..14034647, -
9.37e-99FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_6ef9ca8d48531370a9d2026cef54e302p@chr5:14034644..14034647, -
9.37e-99FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_6ef9ca8d48531370a9d2026cef54e302p@chr11:81551043..81551054, -
9.37e-99FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_6ef9ca8d48531370a9d2026cef54e302p@chr16:51670868..51670880, -
2.55e-98FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr3:45174403..45174415, +
2.55e-98FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr4:34480309..34480321, -
2.55e-98FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr3:45174403..45174415, +
2.55e-98FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr5:23952305..23952310, +
2.55e-98FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr3:106393655..106393659, +
2.55e-98FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr4:34480309..34480321, -
2.55e-98FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr5:23952305..23952310, +
2.55e-98FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_bf4ab47098b498e50cc9b5e9e064c2ebp@chr3:106393655..106393659, +
1.23e-66FFCP PHASE1:Hg19::chr4:177796841..177796851,+#_9a220d8ee112d2b762d0c8ae258a203fp1@ENST00000508790
1.23e-66FFCP PHASE1:Hg19::chr7:119353807..119353812,-#_9a220d8ee112d2b762d0c8ae258a203fp@chr7:119353807..119353812, -
1.23e-66FFCP PHASE2:Hg19::chr4:177796841..177796851,+#_9a220d8ee112d2b762d0c8ae258a203fp1@ENST00000508790
1.23e-66FFCP PHASE2:Hg19::chr7:119353807..119353812,-#_9a220d8ee112d2b762d0c8ae258a203fp@chr7:119353807..119353812, -
2.39e-66FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_a877ca8688064d953a2e661103400226p@chr8:15939682..15939688, +
2.39e-66FFCP PHASE1:Hg19::chr10:37004821..37004852,-#_a877ca8688064d953a2e661103400226p@chr10:37004821..37004852, -
2.39e-66FFCP PHASE1:Hg19::chrX:132231123..132231140,-#_a877ca8688064d953a2e661103400226p1@USP26
2.39e-66FFCP PHASE2:Hg19::chrX:132231123..132231140,-#_a877ca8688064d953a2e661103400226p1@USP26
2.39e-66FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_a877ca8688064d953a2e661103400226p@chr8:15939682..15939688, +
2.39e-66FFCP PHASE2:Hg19::chr10:37004821..37004852,-#_a877ca8688064d953a2e661103400226p@chr10:37004821..37004852, -
4.66e-66FFCP PHASE1:Hg19::chr11:84019133..84019135,-#_f237f0c7309614112a54c988abfe01f2p@chr11:84019133..84019135, -
4.66e-66FFCP PHASE2:Hg19::chr11:84019133..84019135,-#_f237f0c7309614112a54c988abfe01f2p@chr11:84019133..84019135, -
1.46e-50FFCP PHASE1:Hg19::chr5:27723923..27723927,-#_56becd4ed7ee37db67a639543c7c0b3ap@chr5:27723923..27723927, -
1.46e-50FFCP PHASE2:Hg19::chr11:81549961..81549965,-#_56becd4ed7ee37db67a639543c7c0b3ap@chr11:81549961..81549965, -
1.46e-50FFCP PHASE2:Hg19::chr5:27723923..27723927,-#_56becd4ed7ee37db67a639543c7c0b3ap@chr5:27723923..27723927, -
1.46e-50FFCP PHASE1:Hg19::chr11:81549961..81549965,-#_56becd4ed7ee37db67a639543c7c0b3ap@chr11:81549961..81549965, -
2.42e-50FFCP PHASE2:Hg19::chrX:132352373..132352384,-#_39a9d974c88940ec6c3658f0ddb2a7b6p1@TFDP3
2.42e-50FFCP PHASE1:Hg19::chr4:189864018..189864037,+#_39a9d974c88940ec6c3658f0ddb2a7b6p@chr4:189864018..189864037, +
2.42e-50FFCP PHASE1:Hg19::chrX:124347061..124347063,-#_39a9d974c88940ec6c3658f0ddb2a7b6p@chrX:124347061..124347063, -
2.42e-50FFCP PHASE2:Hg19::chr4:189864018..189864037,+#_39a9d974c88940ec6c3658f0ddb2a7b6p@chr4:189864018..189864037, +
2.42e-50FFCP PHASE1:Hg19::chrX:132352373..132352384,-#_39a9d974c88940ec6c3658f0ddb2a7b6p1@TFDP3
2.42e-50FFCP PHASE2:Hg19::chrX:124347061..124347063,-#_39a9d974c88940ec6c3658f0ddb2a7b6p@chrX:124347061..124347063, -
6.58e-50FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_727b8da432c1b8a3e280db0a13d2ca20p@chr7:12997533..12997536, +
6.58e-50FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_727b8da432c1b8a3e280db0a13d2ca20p@chr7:12997533..12997536, +
6.62e-41FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr12:127737083..127737103, -
6.62e-41FFCP PHASE2:Hg19::chr8:119905427..119905438,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr8:119905427..119905438, -
6.62e-41FFCP PHASE1:Hg19::chr5:27742047..27742052,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr5:27742047..27742052, -
6.62e-41FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr12:127737083..127737103, -
6.62e-41FFCP PHASE2:Hg19::chr5:27742047..27742052,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr5:27742047..27742052, -
6.62e-41FFCP PHASE1:Hg19::chr8:119905427..119905438,-#_3f1d724912fe3f6ba6fc6eaced1fa922p@chr8:119905427..119905438, -
9.91e-41FFCP PHASE1:Hg19::chr13:87732242..87732246,-#_8e14c8408e68a301a22adfd40ad22997p@chr13:87732242..87732246, -
9.91e-41FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_8e14c8408e68a301a22adfd40ad22997p@chr9:118595109..118595124, +
9.91e-41FFCP PHASE1:Hg19::chr19:9811101..9811112,-#_8e14c8408e68a301a22adfd40ad22997p3@ZNF812
9.91e-41FFCP PHASE2:Hg19::chr13:87732242..87732246,-#_8e14c8408e68a301a22adfd40ad22997p@chr13:87732242..87732246, -
9.91e-41FFCP PHASE2:Hg19::chr19:9811101..9811112,-#_8e14c8408e68a301a22adfd40ad22997p3@ZNF812
9.91e-41FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_8e14c8408e68a301a22adfd40ad22997p@chr9:118595109..118595124, +
1.48e-40FFCP PHASE1:Hg19::chrX:140336680..140336697,-#_c78cbcffe92168e815055006b684a4b4p2@SPANXC
1.48e-40FFCP PHASE2:Hg19::chrX:140336680..140336697,-#_c78cbcffe92168e815055006b684a4b4p2@SPANXC
3.3e-40FFCP PHASE2:Hg19::chr18:63273310..63273317,+#_4adf88901f8be9334f232cff0ccf29e4p@chr18:63273310..63273317, +
3.3e-40FFCP PHASE2:Hg19::chr11:28792916..28792929,+#_4adf88901f8be9334f232cff0ccf29e4p@chr11:28792916..28792929, +
3.3e-40FFCP PHASE1:Hg19::chr8:76774227..76774234,+#_4adf88901f8be9334f232cff0ccf29e4p@chr8:76774227..76774234, +
3.3e-40FFCP PHASE1:Hg19::chr3:60761167..60761179,+#_4adf88901f8be9334f232cff0ccf29e4p@chr3:60761167..60761179, +
3.3e-40FFCP PHASE2:Hg19::chr8:76774227..76774234,+#_4adf88901f8be9334f232cff0ccf29e4p@chr8:76774227..76774234, +
3.3e-40FFCP PHASE1:Hg19::chr11:28792916..28792929,+#_4adf88901f8be9334f232cff0ccf29e4p@chr11:28792916..28792929, +
3.3e-40FFCP PHASE2:Hg19::chr3:60761167..60761179,+#_4adf88901f8be9334f232cff0ccf29e4p@chr3:60761167..60761179, +
3.3e-40FFCP PHASE1:Hg19::chr18:63273310..63273317,+#_4adf88901f8be9334f232cff0ccf29e4p@chr18:63273310..63273317, +
1.84e-34FFCP PHASE1:Hg19::chr13:87778457..87778464,+#_bfac67330831b82bde8a4712c9ac7ca5p@chr13:87778457..87778464, +
1.84e-34FFCP PHASE1:Hg19::chr3:94657049..94657061,+#_bfac67330831b82bde8a4712c9ac7ca5p1@ENST00000462219
1.84e-34FFCP PHASE2:Hg19::chr13:87778457..87778464,+#_bfac67330831b82bde8a4712c9ac7ca5p@chr13:87778457..87778464, +
1.84e-34FFCP PHASE2:Hg19::chr3:94657049..94657061,+#_bfac67330831b82bde8a4712c9ac7ca5p1@ENST00000462219
3.61e-34FFCP PHASE2:Hg19::chrX:148793752..148793763,+#_5a723e634b6a99416e3afa3a613e493dp3@MAGEA11
3.61e-34FFCP PHASE1:Hg19::chr3:79552183..79552188,+#_5a723e634b6a99416e3afa3a613e493dp@chr3:79552183..79552188, +
3.61e-34FFCP PHASE1:Hg19::chr8:88823985..88824001,-#_5a723e634b6a99416e3afa3a613e493dp@chr8:88823985..88824001, -
3.61e-34FFCP PHASE2:Hg19::chr3:79552183..79552188,+#_5a723e634b6a99416e3afa3a613e493dp@chr3:79552183..79552188, +
3.61e-34FFCP PHASE2:Hg19::chr8:88823985..88824001,-#_5a723e634b6a99416e3afa3a613e493dp@chr8:88823985..88824001, -
3.61e-34FFCP PHASE1:Hg19::chrX:148793752..148793763,+#_5a723e634b6a99416e3afa3a613e493dp3@MAGEA11
5.05e-34FFCP PHASE2:Hg19::chr6:66708902..66708907,-#_9b314ec0616b94aa34919c832632485fp@chr6:66708902..66708907, -
5.05e-34FFCP PHASE1:Hg19::chr7:22136603..22136614,+#_9b314ec0616b94aa34919c832632485fp@chr7:22136603..22136614, +
5.05e-34FFCP PHASE2:Hg19::chr7:22136603..22136614,+#_9b314ec0616b94aa34919c832632485fp@chr7:22136603..22136614, +
5.05e-34FFCP PHASE1:Hg19::chr6:66708902..66708907,-#_9b314ec0616b94aa34919c832632485fp@chr6:66708902..66708907, -
7.06e-34FFCP PHASE1:Hg19::chr19:54545833..54545844,-#_aeb0e5a9084d2704783df0556ae3a9f0p@chr19:54545833..54545844, -
7.06e-34FFCP PHASE1:Hg19::chr17:53535935..53535939,+#_aeb0e5a9084d2704783df0556ae3a9f0p@chr17:53535935..53535939, +
7.06e-34FFCP PHASE2:Hg19::chr17:53535935..53535939,+#_aeb0e5a9084d2704783df0556ae3a9f0p@chr17:53535935..53535939, +
7.06e-34FFCP PHASE2:Hg19::chr19:54545833..54545844,-#_aeb0e5a9084d2704783df0556ae3a9f0p@chr19:54545833..54545844, -
9.85e-34FFCP PHASE1:Hg19::chr10:2357481..2357493,+#_0b7cf91b51e34a3f32d774f7213b679bp@chr10:2357481..2357493, +
9.85e-34FFCP PHASE2:Hg19::chr10:2357481..2357493,+#_0b7cf91b51e34a3f32d774f7213b679bp@chr10:2357481..2357493, +
9.99e-30FFCP PHASE2:Hg19::chr21:17726230..17726234,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr21:17726230..17726234, +
9.99e-30FFCP PHASE1:Hg19::chr3:55313580..55313599,-#_63da32318b6ee4f37c1d3212b59dbf37p@chr3:55313580..55313599, -
9.99e-30FFCP PHASE1:Hg19::chr20:26116623..26116634,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr20:26116623..26116634, +
9.99e-30FFCP PHASE2:Hg19::chrX:141290299..141290303,-#_63da32318b6ee4f37c1d3212b59dbf37p@chrX:141290299..141290303, -
9.99e-30FFCP PHASE2:Hg19::chr3:55313580..55313599,-#_63da32318b6ee4f37c1d3212b59dbf37p@chr3:55313580..55313599, -
9.99e-30FFCP PHASE1:Hg19::chr13:87781278..87781282,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr13:87781278..87781282, +
9.99e-30FFCP PHASE2:Hg19::chr20:26116623..26116634,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr20:26116623..26116634, +
9.99e-30FFCP PHASE1:Hg19::chr21:17726230..17726234,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr21:17726230..17726234, +
9.99e-30FFCP PHASE1:Hg19::chrX:141290299..141290303,-#_63da32318b6ee4f37c1d3212b59dbf37p@chrX:141290299..141290303, -
9.99e-30FFCP PHASE2:Hg19::chr13:87781278..87781282,+#_63da32318b6ee4f37c1d3212b59dbf37p@chr13:87781278..87781282, +
1.33e-29FFCP PHASE1:Hg19::chr6:150217260..150217271,-#_03a3338da3ac24d7b92006d8ab0a4387p6@RAET1E
1.33e-29FFCP PHASE1:Hg19::chr1:4729528..4729537,-#_03a3338da3ac24d7b92006d8ab0a4387p@chr1:4729528..4729537, -
1.33e-29FFCP PHASE2:Hg19::chr6:150217260..150217271,-#_03a3338da3ac24d7b92006d8ab0a4387p6@RAET1E
1.33e-29FFCP PHASE2:Hg19::chr1:4729528..4729537,-#_03a3338da3ac24d7b92006d8ab0a4387p@chr1:4729528..4729537, -

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