FFCP PHASE1:Hg19::chr12:50479101..50479108,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6602 | |EntrezGene=6602 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11106 | |HGNC=11106 | ||
|TSSclassifier=strong | |||
|UniProt=F8VZ70 | |UniProt=F8VZ70 | ||
|association_with_transcript=0bp_to_ENST00000551966_5end | |association_with_transcript=0bp_to_ENST00000551966_5end | ||
|cluster_id=chr12:50479101..50479108,+ | |||
|description=CAGE_peak_3_at_SMARCD1_5end | |description=CAGE_peak_3_at_SMARCD1_5end | ||
|id=chr12:50479101..50479108,+ | |id=chr12:50479101..50479108,+ | ||
|ontology_enrichment_celltype=CL:0002319!8.59e-10!25;CL:0000133!9.91e-09!59;CL:0000221!7.77e-07!71;CL:0000066!8.21e-07!254 | |ontology_enrichment_celltype=CL:0002319!8.59e-10!25;CL:0000133!9.91e-09!59;CL:0000221!7.77e-07!71;CL:0000066!8.21e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.31e-11;25!CL:0002322;8.32e-07;5!CL:0000095;9.20e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.73e-12,59;CL:0002319,6.95e-12,25;CL:0000221,9.42e-10,72;CL:0000333,8.61e-09,41;CL:0000095,2.53e-07,17;CL:0000123,2.53e-07,17;CL:0002322,9.56e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000133;7.85e-07;59 | |||
|ontology_enrichment_disease=DOID:162!1.88e-15!235;DOID:14566!2.21e-15!239;DOID:0050687!4.52e-13!143;DOID:305!2.92e-08!106;DOID:3095!9.39e-08!22;DOID:2994!9.39e-08!22;DOID:0050686!5.59e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.00e-08;22!DOID:2994;4.00e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.84e-11,239;DOID:162,4.11e-11,235;DOID:0050687,1.26e-09,143;DOID:3095,1.47e-08,22;DOID:2994,1.47e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.20e-07!94;UBERON:0001016!7.20e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.140954404095971,0,0,0,0,0,1.56711376919903,0.491467873003018,1.39560233594486,0.873765488520689,1.31883489114227,0.37129905888014,0.994192127183747,0.672325146451775,0.602694528023977,0,0.487932798790507,0.861847406537515,1.63200552995402,1.88072832886853,1.43117993565528,2.73748850145768,2.00868223351684,1.29902789771517,1.72411237844886,0.944529375764151,0,1.15148819429164,0.928896739896456,0,0.30120591877825,1.47901604066715,1.93668001450754,0.995184627411951,0.587200878669695,0,0.200544447470142,0.434021741431704,0,0,0.515151135268373,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.918251677112708,0.320929027076094,0,0,0.398927315243264,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0.211255286311942,0.212604299965044,0,0,0.150176892841506,0.32145117339416,0,0.79566670879636,0,1.75996244461323,0,0,0.853460445133014,0,0.574752439954483,0,0,0,0.587237189370939,0.382273228125229,1.32171328579026,0,1.58030450865046,0.393419540227666,1.57204305099666,0.411202997999018,0,0.32592226663359,0.473447805734733,0,0.111410456885174,0,0.443067789167242,0.541607727530031,0.25618263945135,0.260118695119756,0.493313713811028,0.276350017785848,0,0,0,0,0.339928028092699,0,0.34362744548263,0.253019692019503,0,0,0,0.301150238155546,0.639933055772092,0,0,0.821127996921047,0.604820229674197,1.60464117470104,0.144824403882799,0,0.670700859703636,0.12786256184353,0,0.50133791063589,0.869079113764942,0.795285947051099,0.486634870302636,1.60709189178915,1.10864698731282,1.14185221401064,1.30979075497713,0.728590576585084,0.370784442784429,0,0,0.26591592103773,0.238490624305342,0,0,1.19257444420023,1.72046919021225,1.73570250803797,0,0.419499436209906,1.10047216776027,0.417989933073621,1.03366703667732,1.06729878806013,0.66944122552934,1.61131726843659,0,1.22031028774085,0.367663080345869,0,0.803697554556718,1.79623498100936,0.675668882899933,0,0,1.09921046358244,1.31780417436063,0,0.436094052142534,0,0.379891534993739,0.264818361626438,0.860509862246441,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.933633106199299,0.404132016209064,0.490385709340376,0.908144565869588,0.576175924479999,1.17160715916898,0.312160076830321,0,0.448346041655403,0.352303495931295,1.29498355494505,0.280901613404497,0,0.859840221182376,0.309977343527296,2.37600571456411,0.741800787835671,0,0,0.841680569770331,0.625592599359821,1.38532057742091,0.438977620880838,0.30648779579902,0.751190294532984,0.226864366320042,0.179389635688862,0.427114777637135,0.423863802319124,0,0,0.515281080091258,0.18611685633159,0.843881661206331,0,0,0.276149695926898,0.484938170456436,0,0.10075209822764,0.339121184620975,0.193260853163297,0.545492241181669,0.573609190778008,4.51302712679503,4.5060121229305,6.15827897208447,4.14644220061482,6.30802127189071,1.45990943630332,1.56449532329816,0.643240938192885,0,0,0,1.41968160047813,0.842923450390509,1.68707720918437,0.220587945464788,0.871517776369625,0,0.539325232640658,0.588664395376038,0.769494313892781,0,1.40241773803446,2.057870056657,1.47008711385542,0,0,0,2.20731549707325,1.47586126251736,0.857839051492628,1.64625428112938,1.1240175325762,0.301586917234893,0.462942225792648,2.6064664424826,0,0,1.62302566965108,0.939269553886573,1.29929802984966,0.462985512576611,2.09279567458058,0.790204397959275,0.858486162094873,0,0.468008530278475,0.148631162288728,0,0.503946384596579,0.141775097242386,1.70161193135412,0.581267877027924,0.383382679165211,0.985326475791887,1.23267807618516,0.621984346622316,0.288239906833923,1.00993946741104,0.63497894292169,1.14596527667483,0,0,0.205654985406647,0.300343057843917,1.42913216315289,0.784917590417525,0.43596006883328,0.8800594298514,0.646358578788889,0,0.845302752556,0,0,0.514414748524284,0,0.532844358032199,0.142977993658148,0.542621605391443,0,0.65147236858747,0.355391948742546,0,0.301439377059586,0,0.599837947092342,0,0,0,0,1.14861935834114,0,0.434343920002738,0.410952645100767,0.716243852959582,0.448340575974109,0,0.646882724578552,0.513372145118994,3.55732473911449,5.20559415430487,0.773288812777695,3.18280904135263,5.74144876487847,0.749007023947182,0,0,0.981531933753119,1.00034104211935,0,0.207970861530807,1.42743191037729,0,1.05427273493442,0.300946099727719,0,0,1.32845119707087,0.553107505625109,0.695068915744663,0.391602314925481,1.02943027143257,0.413536052245775,0.431428401637234,0.853820462427555,1.21251028578504,1.66435439510497,2.11673205330776,0.496215615637554,0.61384789315225,1.12264037773229,0.384417447767103,0.511707249066704,0.804269605718038,0,0.308419387605311,0.177561725313127,0.739144404124282,0,0.464841513839837,2.65890789101569,1.20303882181971,0,0.918515585316854,0.728364672026868,0.524497659837696,1.35359883872224,0.924184045252977,3.13739907670742,1.46139224653261,0.949964660035881,0,0,0.647747748306418,0,1.62567862526312,3.51182841698397,0.254876273045038,0.831076008928724,2.91037181138832,0,0,0.769350375349168,1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| ||
|short_description=p3@SMARCD1 | |short_description=p3@SMARCD1 | ||
}} | }} |
Latest revision as of 18:10, 18 September 2015
Short description: | p3@SMARCD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000551966_5end |
EntrezGene: | SMARCD1 |
HGNC: | 11106 |
UniProt: | F8VZ70 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.73e-12 | 59 |
neural cell | 6.95e-12 | 25 |
ectodermal cell | 9.42e-10 | 72 |
migratory neural crest cell | 8.61e-09 | 41 |
neuron associated cell | 2.53e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.53e-07 | 17 |
embryonic stem cell | 9.56e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.84e-11 | 239 |
cancer | 4.11e-11 | 235 |
cell type cancer | 1.26e-09 | 143 |
germ cell and embryonal cancer | 1.47e-08 | 22 |
germ cell cancer | 1.47e-08 | 22 |