FFCP PHASE1:Hg19::chr12:54410639..54410659,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3221,3223,3222 | |EntrezGene=3221,3223,3222 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5126,5128,5127 | |HGNC=5126,5128,5127 | ||
|TSSclassifier=strong | |||
|UniProt=P09017,Q86TF7,P09630 | |UniProt=P09017,Q86TF7,P09630 | ||
|association_with_transcript=0bp_to_NM_014620,NM_153693,NR_003084,uc001ses.2,uc001set.2,uc001seu.2_5end | |association_with_transcript=0bp_to_NM_014620,NM_153693,NR_003084,uc001ses.2,uc001set.2,uc001seu.2_5end | ||
|cluster_id=chr12:54410639..54410659,+ | |||
|coexpression_cluster_id=C1362 | |||
|description=CAGE_peak_2_at_HOXC4_5end,CAGE_peak_2_at_HOXC5_5end,CAGE_peak_2_at_HOXC6_5end | |description=CAGE_peak_2_at_HOXC4_5end,CAGE_peak_2_at_HOXC5_5end,CAGE_peak_2_at_HOXC6_5end | ||
|id=chr12:54410639..54410659,+ | |id=chr12:54410639..54410659,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.35e-11!180;CL:0002620!1.68e-10!23;CL:0000136!3.08e-09!15;CL:0002334!8.58e-09!12;CL:0000057!8.17e-07!75 | |ontology_enrichment_celltype=CL:0000055!2.35e-11!180;CL:0002620!1.68e-10!23;CL:0000136!3.08e-09!15;CL:0002334!8.58e-09!12;CL:0000057!8.17e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002620;5.13e-13;23!CL:0002334;1.98e-10;12!CL:0000136;2.42e-08;13!CL:0002570;2.73e-07;8!CL:0000153;9.00e-07;9!CL:0000447;9.00e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,4.28e-13,23;CL:0002334,1.85e-10,12;CL:0000136,3.27e-10,15;CL:0000057,4.63e-09,76;CL:0002570,2.12e-07,8;CL:0000153,8.58e-07,9;CL:0000447,8.58e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000335;9.06e-07;11 | |||
|ontology_enrichment_disease=DOID:0050687!4.28e-10!143;DOID:14566!1.21e-08!239;DOID:162!4.61e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:1115;1.02e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:1115,1.10e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0002199!2.58e-11!45;UBERON:0002416!2.58e-11!45;UBERON:0001013!9.31e-10!14;UBERON:0002097!3.25e-09!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.68e-11;14!UBERON:0004457;3.80e-09;9!UBERON:0000042;3.80e-09;9!UBERON:0002199;5.47e-09;46!UBERON:0002416;5.47e-09;46!UBERON:0002097;1.46e-08;41!UBERON:0004765;2.38e-08;26!UBERON:0004905;4.17e-08;8!UBERON:0000982;4.17e-08;8!UBERON:0004770;4.17e-08;8!UBERON:0001134;4.86e-08;16!UBERON:0002036;4.86e-08;16!UBERON:0003102;3.66e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,6.91e-14,46;UBERON:0002416,6.91e-14,46;UBERON:0001013,1.20e-11,14;UBERON:0002097,2.68e-11,41;UBERON:0004905,3.82e-08,8;UBERON:0000982,3.82e-08,8;UBERON:0004770,3.82e-08,8;UBERON:0003688,9.03e-07,6;UBERON:0002358,9.03e-07,6;UBERON:0003684,9.03e-07,6;UBERON:0001178,9.03e-07,6 | |||
|phase1_expression=29.4318974418302,15.2011371962598,10.5715803071978,13.009528785907,6.70441641640932,9.59572376510406,2.53299878168311,5.68547886084148,9.40268261519419,0,0,0,0.527533956456907,10.3963736486439,7.29074226601415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.22878304769133,12.0321098552613,9.12533069453189,4.7717156823066,0.486634870302636,0,0,0,2.03017567021455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9515512271251,0.25326102332916,0.662045904066094,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,4.93180645820944,6.22402842811954,6.31304483035713,3.79217178096071,0,0,0,0,0,12.7422590671324,14.3723628363248,0,0,0,0,0,0,0.113432183160021,8.61070251306537,11.1049842185655,4.66250182551036,5.70173082560364,6.08009922506789,14.4278702425552,13.2142967995429,21.2658178623995,14.6155507741798,11.3595198409852,13.3472353031334,0,7.81021103536552,6.85114267947954,4.57813599238317,0,0,0,0,0,0,0,0,0,0,0,0,5.10804720835177,2.88751792667834,2.48444280083672,1.51726221070292,0.482022059766964,2.09558548191549,1.08939722046203,2.60997681022206,1.21348177344148,1.37355025587742,0.38474715694639,0,0,0.4115740113314,0,0,0,0.590789906681404,0,1.96781501668982,0,0.548751427043128,0,1.3068766413512,0,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0,0,0,1.61205340865127,0.871901815541886,1.53353071666084,0,0,0.207328115540772,0.288239906833923,0.12624243342638,3.4923841860693,3.4378958300245,4.68869788840188,5.13217338068116,2.87916979569306,4.20480280981484,2.00078502841405,0,0,0,5.42941206182667,17.8828222925941,5.917119267892,0.26593811658487,0,6.43018435655355,8.5109479213967,6.12771011737029,0,11.3950537132203,5.76268235746538,1.95441710576241,0,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,0,0,0,5.70547620162874,7.23906533337896,8.42452922456572,13.2505112797523,0,0,0,0,0,0,0,0,0,0,0,0,10.1833938126886,11.5039219843726,5.69656549769445,0,0,0,0,5.11608369537122,4.5481500811197,5.17365356462525,7.3064815838898,2.02806085395873,2.43274120510632,0,0,0,0,0,0,0,0.30239029332968,29.5248291304344,22.098524153481,17.4009258548506,6.91951405980785,18.933168215468,9.81208918976006,11.8734453155993,4.47208112027701,4.43904313282818,7.2271897292152,1.55776328755086,4.41599438147845,2.53804844142407,0.200506470303285,0,0,0,0,0.451199612907412,1.07821471946181,3.92174884588428,0,2.32213583564327,1.13733384070897,0,1.0795795805107,0,7.04460737614017,9.03041592938736,2.03901018436031,2.49322802678617,2.68649705666614,0,0,0,0,0,0.721287081534056,3.47963966309705,4.62053199555293,2.87132768998086,0.650060246036521,4.82051789532479,12.2771812230995,1.07834031980251,1.38153307253517,3.44591431211326,6.66005518183296,5.51063436874068,4.85791776271775,6.05417842397814,0,0,0,0,0.464845549297286,0,0.6970372701606,5.23657086299351,0,0.869932992075073,0,0.143124886741991,0,0.316379424718726,0,0.255897791311334,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,3.65570234446927,2.11300293513511,0.136499911407986,0,0,0,0,0.438450885253763,0.578775534266688,0,3.24656603140326,0.92947049429925,2.25356482025793,7.02715625799852,6.77918382990536,2.85336841185,0,6.54433669422759,13.501090611356,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,2.67060177818683,0.962479855263359,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321176150207399,0,0,0,0,0,0,4.49392619424693,0,0,0,0,0,1.49712432326576,6.15334352941955,1.69904730449319,0,5.11445064251544,0.23874448473769,0.890894042497916,0,0,0,0,0.16480387422676,1.90012867315194,4.98119970627674,0,4.28285671352269,0.715880777515084,0,0,0.179736702294654,0,0,0.986434056369336,0,5.55684950723184,0,0,0,0,0.962059999958153,7.24999575434793,0,0,0.945550727071745,0,5.83209226766509,4.68787486319889,0,0,0,0,0,0,4.13966161372163,2.23077990845765,0.384751292518985,0,0,0,0,0,1.37396390102793,0,0,0,0,0,0,0,0,0,0,0,1.13082457147153,6.05888191277855,0.995261931078505,0.707660516026713,4.27721101453538,0,0,0,0,0,0,0,0.19566461893209,2.42780379534093,0.394584402849391,0,0,0,1.35291077473043,4.66596861287612,0.664653872707185,0,0.313932918407225,0,1.70765727617876,13.1740939362482,0,0.195984794828755,0,5.76598005198699,8.42731559110921,2.6124209448053,3.72755517139546,1.56019368401098,0.193978032976839,9.00212492253303,0,2.32971271899477,1.78843150532691,0,5.67099009930929,0,0,4.79543062997113,0.72045208577053,1.14536596165916,0,0.576219191952599,0.99402028452346,0.471388069233591,1.22313785466253,2.71967400412066,3.2639429643623,0,0,0,0,2.57859264851974,0.262887354279314,0,0.229160424011684,0,4.19325901047881,0,0,0,2.88239906833923,5.82479747637269,0,0,0,4.82294659422269,0,0,0,0,0,0,0,0,0,2.0126081255956,4.01909107225911,11.4351002134296,0.528001682597033,0.717149357331379,0.575745591958336,0.714695326373367,0,6.102444903714,1.08599920350743,0,2.61269888087527,3.59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| 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| ||
|short_description=p2@HOXC4,p2@HOXC5,p2@HOXC6 | |short_description=p2@HOXC4,p2@HOXC5,p2@HOXC6 | ||
}} | }} |
Latest revision as of 04:53, 19 September 2015
Short description: | p2@HOXC4, p2@HOXC5, p2@HOXC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXC4_5end, CAGE_peak_2_at_HOXC5_5end, CAGE_peak_2_at_HOXC6_5end |
Coexpression cluster: | C1362_Preadipocyte_Adipocyte_Fibroblast_Mesenchymal_mesenchymal_Myoblast_Smooth |
Association with transcript: | 0bp_to_NM_014620, NM_153693, NR_003084, uc001ses.2, uc001set.2, uc001seu.2_5end |
EntrezGene: | 3221,3223,3222 |
HGNC: | 5128, 5127&submit=Submit 5126, 5128, 5127 |
UniProt: | P09017Q86TF7P09630 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 4.28e-13 | 23 |
preadipocyte | 1.85e-10 | 12 |
fat cell | 3.27e-10 | 15 |
fibroblast | 4.63e-09 | 76 |
mesenchymal stem cell of adipose | 2.12e-07 | 8 |
GAG secreting cell | 8.58e-07 | 9 |
carbohydrate secreting cell | 8.58e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
integument | 6.91e-14 | 46 |
integumental system | 6.91e-14 | 46 |
adipose tissue | 1.20e-11 | 14 |
skin of body | 2.68e-11 | 41 |
articulation | 3.82e-08 | 8 |
skeletal joint | 3.82e-08 | 8 |
articular system | 3.82e-08 | 8 |
omentum | 9.03e-07 | 6 |
peritoneum | 9.03e-07 | 6 |
abdominal cavity | 9.03e-07 | 6 |
visceral peritoneum | 9.03e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 1.10e-07 | 20 |