CL:0000667: Difference between revisions
From FANTOM5_SSTAR
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|id=CL:0000667
|name=collagen secreting cell
|namespace=cell
|def="An extracellular matrix secreting cell that secretes collagen." [GOC:tfm]
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|is_a=CL:0000327...") |
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| | |def="An extracellular matrix secreting cell that secretes collagen." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|id=CL:0000667 | |||
|is_a=CL:0000327 | |||
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|located_in= | |located_in= | ||
|name=collagen secreting cell | |||
|namespace=FANTOM | |||
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Latest revision as of 16:35, 12 September 2014
| Name: | collagen secreting cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An extracellular matrix secreting cell that secretes collagen." [GOC:tfm] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000327(extracellular matrix secreting cell) |
|---|
Children
| is a: | CL:0000138 (chondrocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
- 11410-118E6 (Chondrocyte - de diff, donor3)
- 11411-118E7 (Chondrocyte - re diff, donor3)
Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
- 11410-118E6 (Chondrocyte - de diff, donor3)
- 11411-118E7 (Chondrocyte - re diff, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000667 (collagen secreting cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
