Personal tools

CL:0002419: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002419 |name=mature T cell |namespace=cell |def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] |xref= |is...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002419
|alt_id=
|name=mature T cell
|namespace=cell
|def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
|xref=
|is_a=CL:0000084
|synonym="CD3e-positive T cell" EXACT [];;"CD3epsilon T cell" RELATED [];;"mature T-cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-12T01:56:15Z
|def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002419
|is_a=CL:0000084
|is_obsolete=
|located_in=
|located_in=
|name=mature T cell
|namespace=FANTOM
|obo_creation_date=2010-10-12T01:56:15Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="CD3e-positive T cell" EXACT [];;"CD3epsilon T cell" RELATED [];;"mature T-cell" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:mature T cell
Namespace:FANTOM
Definition:"A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
Synonyms: "CD3e-positive T cell" EXACT []
"CD3epsilon T cell" RELATED []
"mature T-cell" EXACT []
Created by:tmeehan
Creation date:2010-10-12T01:56:15Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000084(T cell)



Children


is a:CL:0000791 (mature alpha-beta T cell),CL:0000813 (memory T cell),CL:0000815 (regulatory T cell),CL:0000898 (naive T cell),CL:0000911 (effector T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002419 (mature T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218p@chr15:89179440..89179457, -
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1p@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1p@chr5:35854487..35854499, -
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1p@chr5:35854779..35854826, +
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1p@chr5:35854779..35854826, +
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6p@chr4:103551892..103551903, -
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6p@chr4:103551892..103551903, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56p@chr5:35856882..35856909, -
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56p@chr5:35856882..35856909, -
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aap1@GTSCR1
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aap1@GTSCR1
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843dp@chr7:97880779..97880793, +
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843dp@chr7:97880779..97880793, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17p@chr1:25255894..25255906, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17p@chr1:25255894..25255906, +
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24p10@HNRPLL
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24p10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188p1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188p3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188p1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188p1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188p@chr11:99015330..99015341, -
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188p@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188p1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188p3@Tnfrsf25
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5fp@chr16:57162957..57162973, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5fp@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189p@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189p@chr2:87053288..87053295, -
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abdp@chr5:35780579..35780585, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abdp@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83p@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83p@chr12:49375076..49375089, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958cp@chr10:9060907..9060927, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958cp@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566ap@chr7:150178764..150178778, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566ap@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259p@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259p@chr2:182038499..182038509, +
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0fp@chr4:4271366..4271377, -
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0fp@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2p10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2p10@ATM
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71fp@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71fp@chr5:67571114..67571129, -
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beeap1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beeap1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beeap@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beeap@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beeap@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beeap@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beeap@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beeap@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beeap@chr8:84082784..84082795, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beeap@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beeap@chr12:74704873..74704900, +
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beeap@chr8:84082784..84082795, +
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145p@chr6:143228788..143228799, -
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145p@chr6:143228788..143228799, -
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2dp@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2dp@chr14:54838649..54838660, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2dp@chr14:54838649..54838660, +
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2dp@chr5:123440767..123440778, +
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963p@chr15:27786221..27786240, -
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963p@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501p@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501p@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501p@chr6:99215016..99215036, +
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501p@chr3:103672068..103672090, -
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468p@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468p@chr6:48634453..48634468, -
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761p@chr7:36816941..36816949, +
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761p@chr7:36816941..36816949, +
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104p5@uc007vxz.1
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104p5@uc007vxz.1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002419&oldid=3275466"