CL:0002548: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002548
|name=cardiac fibroblast
|namespace=cell
|def="A fibroblast that is part of the heart." [GOC:tfm]
|xref=
|is_a=CL:0000057;;CL:0002494
|synonym=
|co...") |
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|part_of=UBERON:0000948 | |part_of=UBERON:0000948 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Revision as of 17:41, 15 June 2012
Name: | cardiac fibroblast |
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Namespace: | cell |
Definition: | "A fibroblast that is part of the heart." [GOC:tfm] |
Created by: | tmeehan |
Creation date: | 2011-02-28T04:57:44Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000057(fibroblast),CL:0002494(cardiocyte) |
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part_of: | UBERON:0000948(heart) |
Children
derives from: | FF:0000059 (human cardiac fibroblast sample) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
Mouse (Mus musculus)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002548 (cardiac fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data