UBERON:0000059: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=major_organ;;organ_slim | |subset=major_organ;;organ_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:55, 26 June 2012
| Name: | large intestine | ||
|---|---|---|---|
| Definition: | "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)] | ||
| Xrefs: |
| ||
| Synonyms: | "intestinum crassum" RELATED [BTO:0000706] | ||
| Subset: |
major_organ organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0004119(endoderm-derived structure) |
|---|
Children
| part of: | UBERON:0001052 (rectum),UBERON:0001153 (caecum),UBERON:0001155 (colon),CL:0002253 (epithelial cell of large intestine),CL:1000279 (smooth muscle cell of large intestine) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000059 (large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.93e-89 | FFCP PHASE2:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786a | p8@MUC12 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786a | p8@MUC12 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786a | p2@FAM55A |
| 1.93e-89 | FFCP PHASE2:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786a | p1@ENST00000446911 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786a | p1@ENST00000446911 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786a | p2@FAM55A |
| 8.79e-75 | FFCP PHASE2:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295 | p@chr11:114522262..114522267, - |
| 8.79e-75 | FFCP PHASE1:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295 | p@chr11:114522262..114522267, - |
| 6.65e-72 | FFCP PHASE2:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49a | p6@CDX2 |
| 6.65e-72 | FFCP PHASE1:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49a | p6@CDX2 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49a | p50@SATB2 |
| 6.65e-72 | FFCP PHASE1:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49a | p50@SATB2 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49a | p@chr4:150822397..150822409, - |
| 6.65e-72 | FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49a | p@chr4:150822397..150822409, - |
| 6.65e-72 | FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49a | p1@MS4A12 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49a | p1@MS4A12 |
| 1.86e-64 | FFCP PHASE1:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644ee | p1@ENST00000438772 |
| 1.86e-64 | FFCP PHASE2:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644ee | p1@ENST00000438772 |
| 2.63e-64 | FFCP PHASE1:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525 | p2@CA1 |
| 2.63e-64 | FFCP PHASE2:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525 | p2@CA1 |
| 2.63e-64 | FFCP PHASE2:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525 | p3@MUC12 |
| 2.63e-64 | FFCP PHASE1:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525 | p3@MUC12 |
| 2.99e-64 | FFCP PHASE2:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113 | p@chr7:100612141..100612155, - |
| 2.99e-64 | FFCP PHASE1:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113 | p@chr7:100612141..100612155, - |
| 3.21e-64 | FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702 | p4@GPA33 |
| 3.21e-64 | FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702 | p4@GPA33 |
| 5.05e-64 | FFCP PHASE2:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bd | p1@RETNLB |
| 5.05e-64 | FFCP PHASE1:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bd | p1@RETNLB |
| 6.55e-64 | FFCP PHASE2:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610 | p3@FRMD1 |
| 6.55e-64 | FFCP PHASE1:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610 | p3@FRMD1 |
| 1.57e-58 | FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773 | p4@MYO7B |
| 1.57e-58 | FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773 | p4@MYO7B |
| 2.84e-58 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561 | p8@CDX2 |
| 2.84e-58 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561 | p8@CDX2 |
| 2.85e-58 | FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684 | p2@FABP2 |
| 2.85e-58 | FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684 | p2@FABP2 |
| 8.62e-58 | FFCP PHASE1:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3 | p@chr16:67463701..67463709, + |
| 8.62e-58 | FFCP PHASE2:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3 | p@chr16:67463701..67463709, + |
| 1.15e-57 | FFCP PHASE2:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346 | p6@FRMD1 |
| 1.15e-57 | FFCP PHASE1:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346 | p6@FRMD1 |
| 1.15e-57 | FFCP PHASE1:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346 | p1@AQP8 |
| 1.15e-57 | FFCP PHASE2:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346 | p1@AQP8 |
| 1.34e-57 | FFCP PHASE2:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3 | p4@SLC13A2 |
| 1.34e-57 | FFCP PHASE1:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3 | p4@SLC13A2 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18 | p7@PDE9A |
| 1.55e-57 | FFCP PHASE1:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18 | p7@PDE9A |
| 1.91e-56 | FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024 | p1@FAM55A |
| 1.91e-56 | FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024 | p1@FAM55A |
| 3.01e-56 | FFCP PHASE1:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883d | p2@FAM55D |
| 3.01e-56 | FFCP PHASE2:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883d | p2@FAM55D |
| 2.16e-54 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51d | p@chr15:45950466..45950474, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51d | p@chr15:45950466..45950474, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51d | p@chr1:38201159..38201166, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51d | p@chr1:38201159..38201166, - |
| 5.44e-54 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746 | p2@NKX2-3 |
| 5.44e-54 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746 | p2@NKX2-3 |
| 5.49e-54 | FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68f | p9@P2RY14 |
| 5.49e-54 | FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68f | p9@P2RY14 |
| 2.22e-52 | FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036d | p3@CDX2 |
| 2.22e-52 | FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036d | p3@CDX2 |
| 2.2e-51 | FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829 | p1@ENST00000542064 |
| 2.2e-51 | FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829 | p1@ENST00000542064 |
| 1.86e-50 | FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7b | p5@CDX2 |
| 1.86e-50 | FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7b | p5@CDX2 |
| 4.97e-50 | FFCP PHASE1:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533de | p2@NOX1 |
| 4.97e-50 | FFCP PHASE2:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533de | p2@NOX1 |
| 6.89e-50 | FFCP PHASE2:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8 | p@chr4:2038275..2038288, + |
| 6.89e-50 | FFCP PHASE1:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8 | p@chr4:2038275..2038288, + |
| 8.44e-50 | FFCP PHASE2:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677 | p3@CDKN2B-AS |
| 8.44e-50 | FFCP PHASE1:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677 | p3@CDKN2B-AS |
| 1.62e-49 | FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173 | p8@HEPH |
| 1.62e-49 | FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173 | p8@HEPH |
| 1.89e-49 | FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5 | p2@BTNL3 |
| 1.89e-49 | FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5 | p2@BTNL3 |
| 5.62e-49 | FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079 | p1@LINC00483 |
| 5.62e-49 | FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079 | p1@LINC00483 |
| 2.86e-48 | FFCP PHASE2:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838 | p@chr16:29748234..29748245, - |
| 2.86e-48 | FFCP PHASE1:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838 | p@chr16:29748234..29748245, - |
| 3.24e-48 | FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52acee | p@chr1:155912696..155912738, - |
| 3.24e-48 | FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52acee | p@chr1:155912696..155912738, - |
| 4.13e-48 | FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143 | p6@PDE9A |
| 4.13e-48 | FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143 | p6@PDE9A |
| 1.96e-46 | FFCP PHASE1:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71 | p3@NOX1 |
| 1.96e-46 | FFCP PHASE2:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71 | p3@NOX1 |
| 2.21e-46 | FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96 | p2@LINC00483 |
| 2.21e-46 | FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96 | p2@LINC00483 |
| 5.02e-46 | FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17f | p3@HEPH |
| 5.02e-46 | FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17f | p3@HEPH |
| 1.1e-45 | FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17f | p1@BTNL8 |
| 1.1e-45 | FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17f | p1@BTNL8 |
| 3.4e-45 | FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909 | p1@TPSG1 |
| 3.4e-45 | FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909 | p1@TPSG1 |
| 4.08e-45 | FFCP PHASE2:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102eda | p1@ZG16 |
| 4.08e-45 | FFCP PHASE1:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102eda | p1@ZG16 |
| 4.9e-45 | FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157d | p3@AMN |
| 4.9e-45 | FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157d | p3@AMN |
| 6.44e-45 | FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564 | p3@GPA33 |
| 6.44e-45 | FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564 | p3@GPA33 |
| 4.52e-44 | FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_14e5eda10e047381b44f84a8e287bce7 | p@chr18:44716456..44716461, + |
| 4.52e-44 | FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_14e5eda10e047381b44f84a8e287bce7 | p@chr4:82849680..82849681, - |
