Personal tools

UBERON:0001171: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def="the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
|def="the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
|xref=FMA:14653;;MA:0002498;;ncithesaurus:Portal_Lobule
|xref=FMA:14653;;MA:0002498;;ncithesaurus:Portal_Lobule
|is_a=UBERON:0000064;;UBERON:0000077
|is_a=UBERON:0000064;;UBERON:0004119
|synonym=
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001280
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:58, 26 June 2012

Name:portal lobule
Definition:"the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
Xrefs:
links:

FMA:14653
MA:0002498

ncithesaurus:Portal_Lobule
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_14653-MA_0002498

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004119(endoderm-derived structure)



Children

part of:UBERON:0001172 (hepatic acinus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001171 (portal lobule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_e588f4566a83135924b10c3cee148352p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_e588f4566a83135924b10c3cee148352p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_e588f4566a83135924b10c3cee148352p9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_e588f4566a83135924b10c3cee148352p9@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_e588f4566a83135924b10c3cee148352p4@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_e588f4566a83135924b10c3cee148352p4@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_e588f4566a83135924b10c3cee148352p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_e588f4566a83135924b10c3cee148352p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_e588f4566a83135924b10c3cee148352p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_e588f4566a83135924b10c3cee148352p5@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_e588f4566a83135924b10c3cee148352p5@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_e588f4566a83135924b10c3cee148352p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_e588f4566a83135924b10c3cee148352p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_e588f4566a83135924b10c3cee148352p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_e588f4566a83135924b10c3cee148352p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_e588f4566a83135924b10c3cee148352p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_e588f4566a83135924b10c3cee148352p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_e588f4566a83135924b10c3cee148352p@chr4:166513744..166513789, +
9.37e-99FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_04a1ddffbd0ab233d449829b951c3caep@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_04a1ddffbd0ab233d449829b951c3caep@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_04a1ddffbd0ab233d449829b951c3caep34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_04a1ddffbd0ab233d449829b951c3caep@chr6:32522832..32522842, -
9.37e-99FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_04a1ddffbd0ab233d449829b951c3caep@chr6:32522832..32522842, -
9.37e-99FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_04a1ddffbd0ab233d449829b951c3caep3@ENST00000410472
9.37e-99FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_04a1ddffbd0ab233d449829b951c3caep3@ENST00000410472
9.37e-99FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_04a1ddffbd0ab233d449829b951c3caep@chr11:73874637..73874639, +
9.37e-99FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_04a1ddffbd0ab233d449829b951c3caep@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_04a1ddffbd0ab233d449829b951c3caep34@IPO5
2.55e-98FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_5e234c6b5728c9167b27d853debda992p1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_5e234c6b5728c9167b27d853debda992p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_5e234c6b5728c9167b27d853debda992p@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_5e234c6b5728c9167b27d853debda992p1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_5e234c6b5728c9167b27d853debda992p@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_5e234c6b5728c9167b27d853debda992p@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_5e234c6b5728c9167b27d853debda992p3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_5e234c6b5728c9167b27d853debda992p3@FMR1NB
1.23e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_d38bdd40c0bdccf3546e0e082c8459bfp3@UGT1A10
1.23e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_d38bdd40c0bdccf3546e0e082c8459bfp3@UGT1A10
1.23e-66FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_d38bdd40c0bdccf3546e0e082c8459bfp14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_d38bdd40c0bdccf3546e0e082c8459bfp@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_d38bdd40c0bdccf3546e0e082c8459bfp@chr4:33469231..33469240, +
1.23e-66FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_d38bdd40c0bdccf3546e0e082c8459bfp14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_d38bdd40c0bdccf3546e0e082c8459bfp9@ROS1
1.23e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_d38bdd40c0bdccf3546e0e082c8459bfp9@ROS1
2.39e-66FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_7db76df55b891302e8534143dfd7ccd2p@chr4:33469257..33469268, +
2.39e-66FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_7db76df55b891302e8534143dfd7ccd2p@chr4:33469257..33469268, +
4.66e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_f91f208eb17ded540bb69caf71e3288ap@chr22:49769903..49769910, +
4.66e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_f91f208eb17ded540bb69caf71e3288ap@chr22:49769903..49769910, +
1.46e-50FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_5f35b44db3b9d8b91bb410020f44b8b3p@chr3:106556772..106556810, -
1.46e-50FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_5f35b44db3b9d8b91bb410020f44b8b3p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE1:Hg19::chr18:514455..514467,+#_5f35b44db3b9d8b91bb410020f44b8b3p@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_5f35b44db3b9d8b91bb410020f44b8b3p@chr3:106556772..106556810, -
1.46e-50FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_5f35b44db3b9d8b91bb410020f44b8b3p@chr6:32522809..32522827, -
1.46e-50FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_5f35b44db3b9d8b91bb410020f44b8b3p@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr18:514455..514467,+#_5f35b44db3b9d8b91bb410020f44b8b3p@chr18:514455..514467, +
1.46e-50FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_5f35b44db3b9d8b91bb410020f44b8b3p@chr6:72255927..72255937, +
2.42e-50FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_d555018f248507d1e5a5e09b99f32052p1@ENST00000453517
2.42e-50FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_d555018f248507d1e5a5e09b99f32052p1@ENST00000453517
2.42e-50FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_d555018f248507d1e5a5e09b99f32052p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_d555018f248507d1e5a5e09b99f32052p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_d555018f248507d1e5a5e09b99f32052p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_d555018f248507d1e5a5e09b99f32052p@chr4:5526611..5526614, -
3.99e-50FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_572cff185fcf7d537b336a47c990fd1bp@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_572cff185fcf7d537b336a47c990fd1bp@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_572cff185fcf7d537b336a47c990fd1bp2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_572cff185fcf7d537b336a47c990fd1bp2@ENST00000438154
3.99e-50FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_572cff185fcf7d537b336a47c990fd1bp@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_572cff185fcf7d537b336a47c990fd1bp@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_572cff185fcf7d537b336a47c990fd1bp@chr22:49769966..49769971, +
3.99e-50FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_572cff185fcf7d537b336a47c990fd1bp@chr22:49769966..49769971, +
3.99e-50FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_572cff185fcf7d537b336a47c990fd1bp2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_572cff185fcf7d537b336a47c990fd1bp2@uc011abv.1
6.58e-50FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_8291670e5be0f55c66a64ce991b47165p7@ADAMTS16
6.58e-50FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_8291670e5be0f55c66a64ce991b47165p7@ADAMTS16
6.58e-50FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_8291670e5be0f55c66a64ce991b47165p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_8291670e5be0f55c66a64ce991b47165p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_8291670e5be0f55c66a64ce991b47165p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_8291670e5be0f55c66a64ce991b47165p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_8291670e5be0f55c66a64ce991b47165p1@ACRC
6.58e-50FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_8291670e5be0f55c66a64ce991b47165p1@ACRC
6.62e-41FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE1:Hg19::chr18:514484..514495,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr18:514484..514495, +
6.62e-41FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p2@FMR1NB
6.62e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p25@COL12A1
6.62e-41FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr18:514484..514495,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr18:514484..514495, +
6.62e-41FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_7300ed0d2a5cec3a2f25f2d7a3f27594p1@ENST00000410472
6.62e-41FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr2:38402050..38402059, +
6.62e-41FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_7300ed0d2a5cec3a2f25f2d7a3f27594p@chr2:38402050..38402059, +
9.91e-41FFCP PHASE2:Hg19::chr1:75600333..75600348,+#_a100a0247c212110b8c7ab9688f2304ap5@LHX8
9.91e-41FFCP PHASE1:Hg19::chr1:75600333..75600348,+#_a100a0247c212110b8c7ab9688f2304ap5@LHX8
9.91e-41FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_a100a0247c212110b8c7ab9688f2304ap@chr12:127737083..127737103, -
9.91e-41FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_a100a0247c212110b8c7ab9688f2304ap@chr12:127737083..127737103, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001171&oldid=1835488"