Personal tools

UBERON:0002771: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 4: Line 4:
|namespace=
|namespace=
|def="Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus]
|def="Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus]
|xref=EFO:0002466;;FMA:61906;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png;;ncithesaurus:Middle_Temporal_Gyrus;;NIF_GrossAnatomy:birnlex_1653;;SCTID:279190006
|xref=EFO:0002466;;FMA:61906;;http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png;;ncithesaurus:Middle_Temporal_Gyrus;;NIF_GrossAnatomy:birnlex_1653;;SCTID:279190006
|is_a=UBERON:0000200
|is_a=UBERON:0000200
|synonym="gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653];;"intermediate temporal gyrus" EXACT [FMA:61906];;"medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus]
|synonym="gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653];;"intermediate temporal gyrus" EXACT [FMA:61906];;"medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus]
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001871
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:02, 26 June 2012

Name:middle temporal gyrus
Definition:"Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus]
Xrefs:
links:

EFO:0002466
FMA:61906
[ WOROI_60_loc.png WOROI_60_loc.png]
[ 200px-WOROI_60_loc.png 200px-WOROI_60_loc.png]
ncithesaurus:Middle_Temporal_Gyrus
NIF_GrossAnatomy:birnlex_1653

SCTID:279190006
Synonyms: "gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653]
"intermediate temporal gyrus" EXACT [FMA:61906]
"medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000200(gyrus)



Children

is a:FF:10353-105E2 (medial temporal gyrus, newborn, donor10223)
derives from:FF:0010150 (human medial temporal gyrus - adult sample),FF:0010156 (human medial temporal gyrus donor sample)
part of:FF:0010156 (human medial temporal gyrus donor sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002771 (middle temporal gyrus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.38e-99FFCP PHASE2:Hg19::chr6:110499950..110499962,-#_1c36568b57ced2db6c9974d2ce088c22p12@WASF1
9.38e-99FFCP PHASE1:Hg19::chr6:110499950..110499962,-#_1c36568b57ced2db6c9974d2ce088c22p12@WASF1
1.55e-98FFCP PHASE1:Hg19::chr8:48752748..48752755,-#_8a9c778c7b208a6503a4245e01036235p@chr8:48752748..48752755, -
1.55e-98FFCP PHASE2:Hg19::chrX:72434069..72434079,-#_8a9c778c7b208a6503a4245e01036235p9@NAP1L2
1.55e-98FFCP PHASE1:Hg19::chr4:46307645..46307654,-#_8a9c778c7b208a6503a4245e01036235p27@GABRA2
1.55e-98FFCP PHASE1:Hg19::chr5:143586373..143586390,+#_8a9c778c7b208a6503a4245e01036235p11@KCTD16
1.55e-98FFCP PHASE2:Hg19::chr5:143586373..143586390,+#_8a9c778c7b208a6503a4245e01036235p11@KCTD16
1.55e-98FFCP PHASE2:Hg19::chr5:58147206..58147213,+#_8a9c778c7b208a6503a4245e01036235p@chr5:58147206..58147213, +
1.55e-98FFCP PHASE1:Hg19::chr2:152695657..152695664,-#_8a9c778c7b208a6503a4245e01036235p@chr2:152695657..152695664, -
1.55e-98FFCP PHASE2:Hg19::chr9:93375695..93375703,-#_8a9c778c7b208a6503a4245e01036235p7@DIRAS2
1.55e-98FFCP PHASE1:Hg19::chr9:87486781..87486786,+#_8a9c778c7b208a6503a4245e01036235p@chr9:87486781..87486786, +
1.55e-98FFCP PHASE2:Hg19::chr8:24809278..24809290,-#_8a9c778c7b208a6503a4245e01036235p7@NEFL
1.55e-98FFCP PHASE1:Hg19::chr9:23825956..23825963,-#_8a9c778c7b208a6503a4245e01036235p21@ELAVL2
1.55e-98FFCP PHASE1:Hg19::chr3:133547522..133547529,-#_8a9c778c7b208a6503a4245e01036235p@chr3:133547522..133547529, -
1.55e-98FFCP PHASE2:Hg19::chr9:23825956..23825963,-#_8a9c778c7b208a6503a4245e01036235p21@ELAVL2
1.55e-98FFCP PHASE2:Hg19::chr1:102270226..102270233,-#_8a9c778c7b208a6503a4245e01036235p@chr1:102270226..102270233, -
1.55e-98FFCP PHASE2:Hg19::chr5:88016570..88016576,-#_8a9c778c7b208a6503a4245e01036235p@chr5:88016570..88016576, -
1.55e-98FFCP PHASE2:Hg19::chr3:167507102..167507119,+#_8a9c778c7b208a6503a4245e01036235p@chr3:167507102..167507119, +
1.55e-98FFCP PHASE2:Hg19::chr2:210558105..210558113,+#_8a9c778c7b208a6503a4245e01036235p86@MAP2
1.55e-98FFCP PHASE1:Hg19::chr2:175664821..175664830,-#_8a9c778c7b208a6503a4245e01036235p@chr2:175664821..175664830, -
1.55e-98FFCP PHASE2:Hg19::chr8:48752748..48752755,-#_8a9c778c7b208a6503a4245e01036235p@chr8:48752748..48752755, -
1.55e-98FFCP PHASE1:Hg19::chrX:72434069..72434079,-#_8a9c778c7b208a6503a4245e01036235p9@NAP1L2
1.55e-98FFCP PHASE2:Hg19::chr2:166168555..166168565,+#_8a9c778c7b208a6503a4245e01036235p@chr2:166168555..166168565, +
1.55e-98FFCP PHASE1:Hg19::chr2:116066853..116066863,+#_8a9c778c7b208a6503a4245e01036235p21@DPP10
1.55e-98FFCP PHASE2:Hg19::chr4:46307645..46307654,-#_8a9c778c7b208a6503a4245e01036235p27@GABRA2
1.55e-98FFCP PHASE1:Hg19::chr4:87023078..87023086,-#_8a9c778c7b208a6503a4245e01036235p34@MAPK10
1.55e-98FFCP PHASE2:Hg19::chr9:87486781..87486786,+#_8a9c778c7b208a6503a4245e01036235p@chr9:87486781..87486786, +
1.55e-98FFCP PHASE2:Hg19::chr3:86119561..86119570,+#_8a9c778c7b208a6503a4245e01036235p16@CADM2
1.55e-98FFCP PHASE1:Hg19::chr8:24809278..24809290,-#_8a9c778c7b208a6503a4245e01036235p7@NEFL
1.55e-98FFCP PHASE1:Hg19::chr1:102270226..102270233,-#_8a9c778c7b208a6503a4245e01036235p@chr1:102270226..102270233, -
1.55e-98FFCP PHASE2:Hg19::chr6:33410974..33410976,+#_8a9c778c7b208a6503a4245e01036235p@chr6:33410974..33410976, +
1.55e-98FFCP PHASE1:Hg19::chr5:88016570..88016576,-#_8a9c778c7b208a6503a4245e01036235p@chr5:88016570..88016576, -
1.55e-98FFCP PHASE1:Hg19::chr3:167507102..167507119,+#_8a9c778c7b208a6503a4245e01036235p@chr3:167507102..167507119, +
1.55e-98FFCP PHASE2:Hg19::chr19:40854879..40854883,+#_8a9c778c7b208a6503a4245e01036235p@chr19:40854879..40854883, +
1.55e-98FFCP PHASE2:Hg19::chr1:102270265..102270271,-#_8a9c778c7b208a6503a4245e01036235p@chr1:102270265..102270271, -
1.55e-98FFCP PHASE1:Hg19::chr2:210558105..210558113,+#_8a9c778c7b208a6503a4245e01036235p86@MAP2
1.55e-98FFCP PHASE1:Hg19::chr2:166168555..166168565,+#_8a9c778c7b208a6503a4245e01036235p@chr2:166168555..166168565, +
1.55e-98FFCP PHASE1:Hg19::chr20:8719908..8719916,+#_8a9c778c7b208a6503a4245e01036235p@chr20:8719908..8719916, +
1.55e-98FFCP PHASE2:Hg19::chr2:116066853..116066863,+#_8a9c778c7b208a6503a4245e01036235p21@DPP10
1.55e-98FFCP PHASE1:Hg19::chr21:22804424..22804428,+#_8a9c778c7b208a6503a4245e01036235p@chr21:22804424..22804428, +
1.55e-98FFCP PHASE2:Hg19::chr4:87023078..87023086,-#_8a9c778c7b208a6503a4245e01036235p34@MAPK10
1.55e-98FFCP PHASE2:Hg19::chr19:49015640..49015642,-#_8a9c778c7b208a6503a4245e01036235p@chr19:49015640..49015642, -
1.55e-98FFCP PHASE1:Hg19::chr3:86119561..86119570,+#_8a9c778c7b208a6503a4245e01036235p16@CADM2
1.55e-98FFCP PHASE2:Hg19::chr21:22804424..22804428,+#_8a9c778c7b208a6503a4245e01036235p@chr21:22804424..22804428, +
1.55e-98FFCP PHASE1:Hg19::chr5:161524744..161524748,+#_8a9c778c7b208a6503a4245e01036235p@chr5:161524744..161524748, +
1.55e-98FFCP PHASE1:Hg19::chr6:33410974..33410976,+#_8a9c778c7b208a6503a4245e01036235p@chr6:33410974..33410976, +
1.55e-98FFCP PHASE2:Hg19::chrX:62885800..62885809,-#_8a9c778c7b208a6503a4245e01036235p@chrX:62885800..62885809, -
1.55e-98FFCP PHASE1:Hg19::chr18:34824762..34824771,-#_8a9c778c7b208a6503a4245e01036235p@chr18:34824762..34824771, -
1.55e-98FFCP PHASE2:Hg19::chr2:187618662..187618667,+#_8a9c778c7b208a6503a4245e01036235p@chr2:187618662..187618667, +
1.55e-98FFCP PHASE1:Hg19::chr1:102270265..102270271,-#_8a9c778c7b208a6503a4245e01036235p@chr1:102270265..102270271, -
1.55e-98FFCP PHASE2:Hg19::chr20:8719908..8719916,+#_8a9c778c7b208a6503a4245e01036235p@chr20:8719908..8719916, +
1.55e-98FFCP PHASE2:Hg19::chr5:7709385..7709396,+#_8a9c778c7b208a6503a4245e01036235p@chr5:7709385..7709396, +
1.55e-98FFCP PHASE2:Hg19::chr2:175664741..175664750,-#_8a9c778c7b208a6503a4245e01036235p@chr2:175664741..175664750, -
1.55e-98FFCP PHASE1:Hg19::chr2:125672383..125672386,+#_8a9c778c7b208a6503a4245e01036235p@chr2:125672383..125672386, +
1.55e-98FFCP PHASE2:Hg19::chr19:55942972..55942977,-#_8a9c778c7b208a6503a4245e01036235p8@SHISA7
1.55e-98FFCP PHASE1:Hg19::chr19:49015640..49015642,-#_8a9c778c7b208a6503a4245e01036235p@chr19:49015640..49015642, -
1.55e-98FFCP PHASE1:Hg19::chrX:62885800..62885809,-#_8a9c778c7b208a6503a4245e01036235p@chrX:62885800..62885809, -
1.55e-98FFCP PHASE2:Hg19::chr5:161524744..161524748,+#_8a9c778c7b208a6503a4245e01036235p@chr5:161524744..161524748, +
1.55e-98FFCP PHASE1:Hg19::chr19:40854879..40854883,+#_8a9c778c7b208a6503a4245e01036235p@chr19:40854879..40854883, +
1.55e-98FFCP PHASE1:Hg19::chr8:91968295..91968306,+#_8a9c778c7b208a6503a4245e01036235p@chr8:91968295..91968306, +
1.55e-98FFCP PHASE1:Hg19::chr2:187618662..187618667,+#_8a9c778c7b208a6503a4245e01036235p@chr2:187618662..187618667, +
1.55e-98FFCP PHASE1:Hg19::chr5:7709385..7709396,+#_8a9c778c7b208a6503a4245e01036235p@chr5:7709385..7709396, +
1.55e-98FFCP PHASE2:Hg19::chr3:191860453..191860457,-#_8a9c778c7b208a6503a4245e01036235p@chr3:191860453..191860457, -
1.55e-98FFCP PHASE2:Hg19::chr2:125672383..125672386,+#_8a9c778c7b208a6503a4245e01036235p@chr2:125672383..125672386, +
1.55e-98FFCP PHASE2:Hg19::chr18:34824762..34824771,-#_8a9c778c7b208a6503a4245e01036235p@chr18:34824762..34824771, -
1.55e-98FFCP PHASE2:Hg19::chr2:175664821..175664830,-#_8a9c778c7b208a6503a4245e01036235p@chr2:175664821..175664830, -
1.55e-98FFCP PHASE1:Hg19::chr19:55942972..55942977,-#_8a9c778c7b208a6503a4245e01036235p8@SHISA7
1.55e-98FFCP PHASE1:Hg19::chr9:93375695..93375703,-#_8a9c778c7b208a6503a4245e01036235p7@DIRAS2
1.55e-98FFCP PHASE1:Hg19::chr5:58147206..58147213,+#_8a9c778c7b208a6503a4245e01036235p@chr5:58147206..58147213, +
1.55e-98FFCP PHASE2:Hg19::chr2:152695657..152695664,-#_8a9c778c7b208a6503a4245e01036235p@chr2:152695657..152695664, -
1.55e-98FFCP PHASE2:Hg19::chr8:91968295..91968306,+#_8a9c778c7b208a6503a4245e01036235p@chr8:91968295..91968306, +
1.55e-98FFCP PHASE2:Hg19::chr3:133547522..133547529,-#_8a9c778c7b208a6503a4245e01036235p@chr3:133547522..133547529, -
1.55e-98FFCP PHASE1:Hg19::chr2:175664741..175664750,-#_8a9c778c7b208a6503a4245e01036235p@chr2:175664741..175664750, -
1.55e-98FFCP PHASE1:Hg19::chr3:191860453..191860457,-#_8a9c778c7b208a6503a4245e01036235p@chr3:191860453..191860457, -
4.22e-98FFCP PHASE1:Hg19::chr8:82945999..82946010,+#_db3514cd49a6afcf241102de838a35f0p@chr8:82945999..82946010, +
4.22e-98FFCP PHASE2:Hg19::chr8:82945999..82946010,+#_db3514cd49a6afcf241102de838a35f0p@chr8:82945999..82946010, +
1.56e-79FFCP PHASE1:Hg19::chr17:29623072..29623083,-#_0783024ceaec0249d0a59d1ba2d0821cp4@OMG
1.56e-79FFCP PHASE2:Hg19::chr17:29623072..29623083,-#_0783024ceaec0249d0a59d1ba2d0821cp4@OMG
3.49e-79FFCP PHASE2:Hg19::chr12:79845142..79845155,+#_2048bc984642287599c931da17fb4c52p22@SYT1
3.49e-79FFCP PHASE1:Hg19::chr12:79845142..79845155,+#_2048bc984642287599c931da17fb4c52p22@SYT1
5.22e-79FFCP PHASE2:Hg19::chr4:118292669..118292678,+#_decada432782fdb7289e25c5c18da7a9p@chr4:118292669..118292678, +
5.22e-79FFCP PHASE1:Hg19::chr4:118292669..118292678,+#_decada432782fdb7289e25c5c18da7a9p@chr4:118292669..118292678, +
7.41e-67FFCP PHASE2:Hg19::chr3:179342188..179342199,+#_ead869929b2e425c1598f859c8550b2ap@chr3:179342188..179342199, +
7.41e-67FFCP PHASE1:Hg19::chr3:179342188..179342199,+#_ead869929b2e425c1598f859c8550b2ap@chr3:179342188..179342199, +
1.45e-66FFCP PHASE1:Hg19::chr10:102089952..102089973,-#_0d768699424badc4723d9872bc054647p2@PKD2L1
1.45e-66FFCP PHASE2:Hg19::chr12:57979967..57979978,+#_0d768699424badc4723d9872bc054647p13@KIF5A
1.45e-66FFCP PHASE1:Hg19::chr12:57979967..57979978,+#_0d768699424badc4723d9872bc054647p13@KIF5A
1.45e-66FFCP PHASE2:Hg19::chr10:102089952..102089973,-#_0d768699424badc4723d9872bc054647p2@PKD2L1
1.45e-66FFCP PHASE1:Hg19::chr9:93374840..93374853,-#_0d768699424badc4723d9872bc054647p5@DIRAS2
1.45e-66FFCP PHASE2:Hg19::chr9:93374840..93374853,-#_0d768699424badc4723d9872bc054647p5@DIRAS2
2.84e-66FFCP PHASE2:Hg19::chr13:53938493..53938506,+#_9de7d5d428954e577bc7f166fbca3b32p@chr13:53938493..53938506, +
2.84e-66FFCP PHASE1:Hg19::chr13:53938493..53938506,+#_9de7d5d428954e577bc7f166fbca3b32p@chr13:53938493..53938506, +
3.96e-66FFCP PHASE2:Hg19::chr8:143271384..143271387,+#_53d44af3495edc87169a8540fc06522ep@chr8:143271384..143271387, +
3.96e-66FFCP PHASE1:Hg19::chr8:143271384..143271387,+#_53d44af3495edc87169a8540fc06522ep@chr8:143271384..143271387, +
1.51e-57FFCP PHASE1:Hg19::chr12:57969424..57969435,+#_8391ac4c568c40c923b636f087507b87p@chr12:57969424..57969435, +
1.51e-57FFCP PHASE2:Hg19::chr1:183219137..183219155,-#_8391ac4c568c40c923b636f087507b87p11@NMNAT2
1.51e-57FFCP PHASE2:Hg19::chr3:133100631..133100639,-#_8391ac4c568c40c923b636f087507b87p@chr3:133100631..133100639, -
1.51e-57FFCP PHASE1:Hg19::chr1:183219137..183219155,-#_8391ac4c568c40c923b636f087507b87p11@NMNAT2
1.51e-57FFCP PHASE1:Hg19::chr3:133100631..133100639,-#_8391ac4c568c40c923b636f087507b87p@chr3:133100631..133100639, -
1.51e-57FFCP PHASE2:Hg19::chr12:57969424..57969435,+#_8391ac4c568c40c923b636f087507b87p@chr12:57969424..57969435, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002771&oldid=1835802"