Personal tools

UBERON:0003099: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|def="The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
|def="The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
|xref=AAO:0010580;;EFO:0003645;;EHDAA2:0004420;;EMAPA:16091;;TAO:0001194;;VHOG:0000063;;XAO:0001001;;ZFA:0001194
|xref=AAO:0010580;;EFO:0003645;;EHDAA2:0004420;;EMAPA:16091;;TAO:0001194;;VHOG:0000063;;XAO:0001001;;ZFA:0001194
|is_a=UBERON:0000479;;UBERON:0004121;;UBERON:0005291
|is_a=UBERON:0004121;;UBERON:0005291
|synonym="cephalic neural crest" RELATED [EMAPA:16091];;"head crest" RELATED [];;"head neural crest" RELATED []
|synonym="cephalic neural crest" RELATED [EMAPA:16091];;"crista neuralis cranialis" RELATED LATIN [Wikipedia:Cranial_neural_crest];;"head crest" RELATED [];;"head neural crest" RELATED []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:XAO_0001001-ZFA_0001194
|alt_id=UBERON:XAO_0001001-ZFA_0001194
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002342
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anterior most portion of the neural crest. Migrates in three highly conserved streams: mandibular, hyoid and branchial.[AAO]" xsd:string;;UBPROP:0000001 "Neural crest that is part of the head.[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:03, 26 June 2012

Name:cranial neural crest
Definition:"The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
Xrefs:
links:

AAO:0010580
EFO:0003645
EHDAA2:0004420
EMAPA:16091
TAO:0001194
VHOG:0000063
XAO:0001001

ZFA:0001194
Synonyms: "cephalic neural crest" RELATED [EMAPA:16091]
"crista neuralis cranialis" RELATED LATIN [Wikipedia:Cranial_neural_crest]
"head crest" RELATED []
"head neural crest" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:XAO_0001001-ZFA_0001194
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)



Children

is a:UBERON:0003849 (mesencephalic neural crest),UBERON:0003852 (rhombencephalon neural crest),UBERON:0005565 (facio-acoustic neural crest)
develops from:UBERON:0007213 (mesenchyme derived from head neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003099 (cranial neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_46a1de3b034d8ac104db806730ffa12bp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_46a1de3b034d8ac104db806730ffa12bp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_e90aa0e6f4d535799c52baae3511d780p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_e90aa0e6f4d535799c52baae3511d780p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_e90aa0e6f4d535799c52baae3511d780p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_e90aa0e6f4d535799c52baae3511d780p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_e90aa0e6f4d535799c52baae3511d780p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_e90aa0e6f4d535799c52baae3511d780p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_e90aa0e6f4d535799c52baae3511d780p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_e90aa0e6f4d535799c52baae3511d780p@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_ad74e28132eca1880239785893f812e8p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_ad74e28132eca1880239785893f812e8p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_ad74e28132eca1880239785893f812e8p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_ad74e28132eca1880239785893f812e8p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_4f4681b0cb8f7ada521ad0508d74fe47p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_4f4681b0cb8f7ada521ad0508d74fe47p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_ffacbad1e0d41d92df8307a21fbfcc20p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_ffacbad1e0d41d92df8307a21fbfcc20p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_ffacbad1e0d41d92df8307a21fbfcc20p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_ffacbad1e0d41d92df8307a21fbfcc20p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_ffacbad1e0d41d92df8307a21fbfcc20p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_ffacbad1e0d41d92df8307a21fbfcc20p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_cc47877f38ef60ef5466e278f7e1ef23p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_cc47877f38ef60ef5466e278f7e1ef23p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_6102483e4ed8d64c9633e27dda7e2e1ep1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_6102483e4ed8d64c9633e27dda7e2e1ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_6102483e4ed8d64c9633e27dda7e2e1ep1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_6102483e4ed8d64c9633e27dda7e2e1ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_6102483e4ed8d64c9633e27dda7e2e1ep7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_6102483e4ed8d64c9633e27dda7e2e1ep7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_de1216d24d90d9214dab7c4c1e9a2998p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_de1216d24d90d9214dab7c4c1e9a2998p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_de1216d24d90d9214dab7c4c1e9a2998p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_de1216d24d90d9214dab7c4c1e9a2998p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_c799d52fd5ae22eee0111a08d60b1f2fp@chr8:57353779..57353790, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_b3472fc033383b7552f9fd817f6f9ad0p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_b3472fc033383b7552f9fd817f6f9ad0p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_b3472fc033383b7552f9fd817f6f9ad0p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_b3472fc033383b7552f9fd817f6f9ad0p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_b3472fc033383b7552f9fd817f6f9ad0p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_b3472fc033383b7552f9fd817f6f9ad0p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_84a2235c76e29c17e2130c10f1c42378p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_84a2235c76e29c17e2130c10f1c42378p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_84a2235c76e29c17e2130c10f1c42378p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_84a2235c76e29c17e2130c10f1c42378p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_f9a9e963b3adcb2e502d9e9b3abe88dbp@chr6:46190219..46190230, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_75e7e95384083b97dbd96e9abab4fb00p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_75e7e95384083b97dbd96e9abab4fb00p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_75e7e95384083b97dbd96e9abab4fb00p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_75e7e95384083b97dbd96e9abab4fb00p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_75e7e95384083b97dbd96e9abab4fb00p5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_75e7e95384083b97dbd96e9abab4fb00p4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_79fa4f6f580d0c7a62de77c403004d4bp9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_79fa4f6f580d0c7a62de77c403004d4bp9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_e1455b68b6d09f1837fe4b81a02a336ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_e1455b68b6d09f1837fe4b81a02a336ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_7124d92e1e06c1955ff6f71b108ecce9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_7124d92e1e06c1955ff6f71b108ecce9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_7124d92e1e06c1955ff6f71b108ecce9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_7124d92e1e06c1955ff6f71b108ecce9p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_055b758cfbded20170e848b851c73ed2p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_055b758cfbded20170e848b851c73ed2p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_055b758cfbded20170e848b851c73ed2p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_055b758cfbded20170e848b851c73ed2p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_055b758cfbded20170e848b851c73ed2p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_055b758cfbded20170e848b851c73ed2p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_297640b28d1bcb0c639cdba3f06f7c09p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_109e9a8648a226eca7d99f4071cbff4ep7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_109e9a8648a226eca7d99f4071cbff4ep10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_109e9a8648a226eca7d99f4071cbff4ep10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_109e9a8648a226eca7d99f4071cbff4ep7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_e50fe49600b3c3855bdce5efd3c8a3fdp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_a2dc04693305706e2bcacfbd49930e86p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_a2dc04693305706e2bcacfbd49930e86p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_ca9f4b8669898df264db249505fd46b3p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_ca9f4b8669898df264db249505fd46b3p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_ca9f4b8669898df264db249505fd46b3p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_ca9f4b8669898df264db249505fd46b3p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_ca9f4b8669898df264db249505fd46b3p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_ca9f4b8669898df264db249505fd46b3p@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_82b2166c7c3fe31a05e36be88246e87cp@chr15:52606315..52606320, -
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_82b2166c7c3fe31a05e36be88246e87cp@chr10:28033565..28033575, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anterior most portion of the neural crest. Migrates in three highly conserved streams: mandibular, hyoid and branchial.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Neural crest that is part of the head.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003099&oldid=1835834"