UBERON:0005181: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
| Name: | thoracic segment organ | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: | "upper body organ" RELATED [MA:0000563] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005177(trunk region element) |
|---|
Children
| is a: | UBERON:0000948 (heart),UBERON:0001103 (diaphragm),UBERON:0003830 (thoracic segment muscle),UBERON:0005175 (chest organ),UBERON:0005178 (thoracic cavity element) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005181 (thoracic segment organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_4e1bef4ae1b2f454560a0ca25b16ba83 | p4@Tbx4 |
| 1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_4e1bef4ae1b2f454560a0ca25b16ba83 | p4@Tbx4 |
| 4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_0bfc5fab404c9c5caa5fe20943753f04 | p@chr9:20829911..20829920, + |
| 4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_0bfc5fab404c9c5caa5fe20943753f04 | p@chr9:20829911..20829920, + |
| 1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2b82c9add331232314c0ae9c1c1b15c8 | p1@ENSMUST00000134305 |
| 1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2b82c9add331232314c0ae9c1c1b15c8 | p1@ENSMUST00000134305 |
| 1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_9d83db7942f101c424606d38ddf4541b | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_9d83db7942f101c424606d38ddf4541b | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_54e8413390cb91864a299d7441b96a24 | p6@Tbx4 |
| 1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_54e8413390cb91864a299d7441b96a24 | p6@Tbx4 |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_35cf7f8751b03a64e912e4d455b8682e | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_35cf7f8751b03a64e912e4d455b8682e | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_35cf7f8751b03a64e912e4d455b8682e | p@chr11:59457994..59457997, - |
| 1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_f4769f39a5ad703f940815e72743468a | p9@Nav2 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_f4769f39a5ad703f940815e72743468a | p9@Nav2 |
| 2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_771c9473274abb7d8eaac98b57efdd96 | p@chr12:57633887..57633899, - |
| 2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_771c9473274abb7d8eaac98b57efdd96 | p@chr12:57633887..57633899, - |
| 1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_2362df89548a3d6f46b77e8aac4361b9 | p8@Nkx2-1 |
| 1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_2362df89548a3d6f46b77e8aac4361b9 | p8@Nkx2-1 |
| 1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_17273352d12a1bdf75235acd77fa05a0 | p2@E030019B13Rik |
| 1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_17273352d12a1bdf75235acd77fa05a0 | p2@E030019B13Rik |
| 1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_88a18127a11a6c2fcbe6d046248675a3 | p10@Nebl |
| 1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_88a18127a11a6c2fcbe6d046248675a3 | p10@Nebl |
| 1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_fdf767189e63912a45c46a3c7fe4f969 | p9@Nkx2-1 |
| 1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_fdf767189e63912a45c46a3c7fe4f969 | p9@Nkx2-1 |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_7b4164ab870591aa36788954b560b073 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_7b4164ab870591aa36788954b560b073 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_7b4164ab870591aa36788954b560b073 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_7b4164ab870591aa36788954b560b073 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_7b4164ab870591aa36788954b560b073 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_7b4164ab870591aa36788954b560b073 | p3@Trpm6 |
| 2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_021933f4d07ee6194439749d66105c8c | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_021933f4d07ee6194439749d66105c8c | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_021933f4d07ee6194439749d66105c8c | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_021933f4d07ee6194439749d66105c8c | p@chr14:115241755..115241762, - |
| 2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_61405b3fb0127db03ed5b001b405047a | p@chr4:138812999..138813015, + |
| 2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_61405b3fb0127db03ed5b001b405047a | p@chr4:138812999..138813015, + |
| 3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_7cbaebeb98f070759f26e2473759a6d4 | p7@Il18r1 |
| 3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_7cbaebeb98f070759f26e2473759a6d4 | p7@Il18r1 |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_6ba98f685d377d510e8d1f5f7deaba70 | p3@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_6ba98f685d377d510e8d1f5f7deaba70 | p3@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_6ba98f685d377d510e8d1f5f7deaba70 | p4@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_6ba98f685d377d510e8d1f5f7deaba70 | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_6ba98f685d377d510e8d1f5f7deaba70 | p@chr1:184610062..184610074, + |
| 9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_19a8ee71a37d1c4526713aebb09b1609 | p@chr5:120282691..120282701, + |
| 9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_19a8ee71a37d1c4526713aebb09b1609 | p@chr5:120282691..120282701, + |
| 1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_f09c9d9b97bdd551158b9cdfdf3bb3b5 | p@chr12:57636911..57636924, - |
| 1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_f09c9d9b97bdd551158b9cdfdf3bb3b5 | p@chr12:57636911..57636924, - |
| 3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_386b14ec90eda89f9355f7555f99eaab | p4@E030019B13Rik |
| 3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_386b14ec90eda89f9355f7555f99eaab | p4@E030019B13Rik |
| 1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_3f7a0c0387c0275bcf19f87c90aae015 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_3f7a0c0387c0275bcf19f87c90aae015 | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_3f7a0c0387c0275bcf19f87c90aae015 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_3f7a0c0387c0275bcf19f87c90aae015 | p@chr12:57623172..57623185, - |
| 1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_2c0a399873ad12480828fa0f93395398 | p@chr5:28785436..28785450, - |
| 1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_2c0a399873ad12480828fa0f93395398 | p@chr5:28785436..28785450, - |
| 1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_12d2597a5ef215e1f0af2b18a9821296 | p@chr14:70922459..70922482, - |
| 1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_12d2597a5ef215e1f0af2b18a9821296 | p@chr14:70922459..70922482, - |
| 5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_64996d9422471b4c57a5ac3dfdd2035b | p4@Etv5 |
| 5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_64996d9422471b4c57a5ac3dfdd2035b | p4@Etv5 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_14dce0b9ea4a0541952e9d0d8eb614eb | p@chr6:72263977..72263993, + |
| 2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_1ac9caa72f38e9ed46902b7273977ecd | p@chr6:72264609..72264653, - |
| 2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_1ac9caa72f38e9ed46902b7273977ecd | p@chr6:72264609..72264653, - |
| 2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_de294655de0b5b8e75306ea813385cf8 | p@chr6:129378567..129378573, - |
| 2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_de294655de0b5b8e75306ea813385cf8 | p@chr6:129378567..129378573, - |
| 3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_4c16150a92cc628817a1372b7f8c8d67 | p16@Pde5a |
| 3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_4c16150a92cc628817a1372b7f8c8d67 | p16@Pde5a |
| 5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_a9bff01945f9a715e466ed506cab304c | p7@Nkx2-1 |
| 5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_a9bff01945f9a715e466ed506cab304c | p7@Nkx2-1 |
