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{{CL
{{CL
|id=CL:0002368
|id=CL:0002368
|name=respiratory epithelial cell
|name=airway epithelial cell;;respiratory epithelial cell
|namespace=efo
|namespace=cell;;efo
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm]
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm]
|xref=BTO:0004533
|xref=BTO:0004533
|is_a=CL:0000066;;CL:0002076
|is_a=CL:0002076
|synonym="airway epithelial cell" EXACT []
|synonym="airway epithelial cell" EXACT []
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=2010-09-23T04:38:49Z
|obo_creation_date=2010-09-23T04:38:49Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0000065
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:27, 26 June 2012

Name:airway epithelial cell;;respiratory epithelial cell
Namespace:cell;;efo
Definition:"An endo-epithelial cell of the respiratory tract." [GOC:tfm]
Xrefs:
links:
BTO:0004533
Synonyms: "airway epithelial cell" EXACT []
Created by:tmeehan
Creation date:2010-09-23T04:38:49Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002076(endo-epithelial cell)



Children


is a:CL:0002632 (epithelial cell of lower respiratory tract)
derives from:FF:0000166 (human small airway epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002368 (airway epithelial cell;;respiratory epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data