CL:0002625: Difference between revisions
From FANTOM5_SSTAR
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|subset= | |subset= | ||
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|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
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Revision as of 17:28, 26 June 2012
| Name: | seminiferous tubule epithelial cell |
|---|---|
| Namespace: | cell |
| Definition: | "A cell of the seminiferous tubule epithelium." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-15T11:59:23Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000077(mesothelial cell) |
|---|
Children
| is a: | CL:0000216 (Sertoli cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
Mouse (Mus musculus)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002625 (seminiferous tubule epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369 | p26@BDNF |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_7e759df653f21cf5931b340830acd369 | p26@BDNF |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23 | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23 | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_61979be5003f3a44b1fbb50a48ef9d23 | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_61979be5003f3a44b1fbb50a48ef9d23 | p9@RARRES1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cb | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_5e35336ec2bcd2c38ed9e846853f13cb | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_5e35336ec2bcd2c38ed9e846853f13cb | p@chr19:54600897..54600899, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6c | p@chr2:19551668..19551679, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_9cbb88826ea56e9192bea92c6749de6c | p@chr2:19551668..19551679, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518 | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_28574594d2f2813a9fb8aaeeaf491518 | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518 | p21@EPS8 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_28574594d2f2813a9fb8aaeeaf491518 | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_28574594d2f2813a9fb8aaeeaf491518 | p21@EPS8 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_28574594d2f2813a9fb8aaeeaf491518 | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_28574594d2f2813a9fb8aaeeaf491518 | p22@TMEM130 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_8549e3b66b5f4a4199b4700e34b76099 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_8549e3b66b5f4a4199b4700e34b76099 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_8549e3b66b5f4a4199b4700e34b76099 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_8549e3b66b5f4a4199b4700e34b76099 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_8549e3b66b5f4a4199b4700e34b76099 | p@chr3:170916991..170916995, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74ef | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74ef | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_1afa7bd3853d43a79dc740fc365e74ef | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_1afa7bd3853d43a79dc740fc365e74ef | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74ef | p8@TCF21 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_1afa7bd3853d43a79dc740fc365e74ef | p8@TCF21 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_581e80a2eba07275caaf4a53b55328f1 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_581e80a2eba07275caaf4a53b55328f1 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_581e80a2eba07275caaf4a53b55328f1 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_581e80a2eba07275caaf4a53b55328f1 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_581e80a2eba07275caaf4a53b55328f1 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_581e80a2eba07275caaf4a53b55328f1 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_581e80a2eba07275caaf4a53b55328f1 | p6@C2orf63 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1ce | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_0a809deb07e4bad34171e8bab09ff1ce | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1ce | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1ce | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1ce | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1ce | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_0a809deb07e4bad34171e8bab09ff1ce | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:829412..829430,+#_0a809deb07e4bad34171e8bab09ff1ce | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_0a809deb07e4bad34171e8bab09ff1ce | p10@ESR2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_0a809deb07e4bad34171e8bab09ff1ce | p@chr15:39420650..39420666, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224 | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224 | p13@SOS2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_bdd864286a792d39ce8123f734123224 | p13@SOS2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_bdd864286a792d39ce8123f734123224 | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224 | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_bdd864286a792d39ce8123f734123224 | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_bdd864286a792d39ce8123f734123224 | p51@CDK6 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08 | p@chr3:194214959..194214968, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_2da1c9aaf17abe809b574175f1d67b08 | p@chr3:194214959..194214968, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_4903c84de54083760717d12debdf262e | p8@ENDOD1 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr13:49549473..49549480,+#_4903c84de54083760717d12debdf262e | p@chr13:49549473..49549480, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:77282391..77282402,+#_4903c84de54083760717d12debdf262e | p@chr11:77282391..77282402, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr8:125193673..125193689,-#_4903c84de54083760717d12debdf262e | p@chr8:125193673..125193689, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr3:49139102..49139119,-#_4903c84de54083760717d12debdf262e | p@chr3:49139102..49139119, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr15:34522001..34522013,+#_4903c84de54083760717d12debdf262e | p@chr15:34522001..34522013, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:94822746..94822757,+#_4903c84de54083760717d12debdf262e | p8@ENDOD1 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr8:125193673..125193689,-#_4903c84de54083760717d12debdf262e | p@chr8:125193673..125193689, - |
