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{{DOID
{{DOID
|id=DOID:0060100
|alt_id=
|name=musculoskeletal system cancer
|namespace=disease_ontology
|def="An organ system cancer located_in the muscular and skeltal organs and characterized by uncontrolled cellular proliferation of the musculoskeletal organs." [url:http://en.wikipedia.org/wiki/Musculoskeletal_system#Diseases_and_disorders]
|xref=
|is_a=DOID:0050686
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=lschriml
|created_by=lschriml
|obo_creation_date=2011-07-15T02:30:51Z
|def="An organ system cancer located_in the muscular and skeltal organs and characterized by uncontrolled cellular proliferation of the musculoskeletal organs." [url:http://en.wikipedia.org/wiki/Musculoskeletal_system#Diseases_and_disorders]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:0060100
|is_a=DOID:0050686
|is_obsolete=
|located_in=
|located_in=
|name=musculoskeletal system cancer
|namespace=disease_ontology
|obo_creation_date=2011-07-15T02:30:51Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym=
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|xref=
}}
}}

Revision as of 10:32, 12 September 2014

Name:musculoskeletal system cancer
Namespace:disease_ontology
Definition:"An organ system cancer located_in the muscular and skeltal organs and characterized by uncontrolled cellular proliferation of the musculoskeletal organs." [url:http://en.wikipedia.org/wiki/Musculoskeletal_system#Diseases_and_disorders]
Created by:lschriml
Creation date:2011-07-15T02:30:51Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060124 (skeletal system cancer),DOID:201 (connective tissue cancer),DOID:4045 (muscle cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060100 (musculoskeletal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr1:180919481..180919491,-#_8adaab70658388b16170ca9a132102d5p4@Smyd3
1.58e-86FFCP PHASE1:Mm9::chr1:180919481..180919491,-#_8adaab70658388b16170ca9a132102d5p4@Smyd3
6.04e-65FFCP PHASE1:Mm9::chr12:32681792..32681797,-#_70f1397c001c45dbb9de9ecbb15f2c98p@chr12:32681792..32681797, -
6.04e-65FFCP PHASE2:Mm9::chr10:94309614..94309618,+#_70f1397c001c45dbb9de9ecbb15f2c98p@chr10:94309614..94309618, +
6.04e-65FFCP PHASE1:Mm9::chr10:94309614..94309618,+#_70f1397c001c45dbb9de9ecbb15f2c98p@chr10:94309614..94309618, +
6.04e-65FFCP PHASE2:Mm9::chr12:32681792..32681797,-#_70f1397c001c45dbb9de9ecbb15f2c98p@chr12:32681792..32681797, -
1.1e-52FFCP PHASE1:Mm9::chr18:42389517..42389526,-#_f9956c921ac7e5e607b07e9666c603b4p@chr18:42389517..42389526, -
1.1e-52FFCP PHASE2:Mm9::chr18:42389517..42389526,-#_f9956c921ac7e5e607b07e9666c603b4p@chr18:42389517..42389526, -
1.65e-52FFCP PHASE2:Mm9::chr2:65027620..65027631,+#_17a212d7b3b6e250de2627a0a68aff12p@chr2:65027620..65027631, +
1.65e-52FFCP PHASE2:Mm9::chr12:109999540..109999552,-#_17a212d7b3b6e250de2627a0a68aff12p@chr12:109999540..109999552, -
1.65e-52FFCP PHASE1:Mm9::chr4:95407927..95407931,-#_17a212d7b3b6e250de2627a0a68aff12p@chr4:95407927..95407931, -
1.65e-52FFCP PHASE2:Mm9::chr4:95407927..95407931,-#_17a212d7b3b6e250de2627a0a68aff12p@chr4:95407927..95407931, -
1.65e-52FFCP PHASE1:Mm9::chr12:109999540..109999552,-#_17a212d7b3b6e250de2627a0a68aff12p@chr12:109999540..109999552, -
1.65e-52FFCP PHASE2:Mm9::chr17:73986396..73986402,-#_17a212d7b3b6e250de2627a0a68aff12p@chr17:73986396..73986402, -
1.65e-52FFCP PHASE1:Mm9::chr17:18027312..18027316,+#_17a212d7b3b6e250de2627a0a68aff12p@chr17:18027312..18027316, +
1.65e-52FFCP PHASE1:Mm9::chr17:73986396..73986402,-#_17a212d7b3b6e250de2627a0a68aff12p@chr17:73986396..73986402, -
1.65e-52FFCP PHASE1:Mm9::chr1:93945098..93945105,-#_17a212d7b3b6e250de2627a0a68aff12p@chr1:93945098..93945105, -
1.65e-52FFCP PHASE2:Mm9::chr17:18027312..18027316,+#_17a212d7b3b6e250de2627a0a68aff12p@chr17:18027312..18027316, +
1.65e-52FFCP PHASE2:Mm9::chr1:93945098..93945105,-#_17a212d7b3b6e250de2627a0a68aff12p@chr1:93945098..93945105, -
1.65e-52FFCP PHASE1:Mm9::chr2:65027620..65027631,+#_17a212d7b3b6e250de2627a0a68aff12p@chr2:65027620..65027631, +
2.47e-52FFCP PHASE1:Mm9::chr3:51015481..51015493,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr3:51015481..51015493, -
2.47e-52FFCP PHASE1:Mm9::chr5:91125117..91125120,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr5:91125117..91125120, -
2.47e-52FFCP PHASE1:Mm9::chr9:96519592..96519622,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr9:96519592..96519622, +
2.47e-52FFCP PHASE1:Mm9::chr10:84019204..84019209,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr10:84019204..84019209, +
2.47e-52FFCP PHASE2:Mm9::chr9:96519592..96519622,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr9:96519592..96519622, +
2.47e-52FFCP PHASE2:Mm9::chr5:91125117..91125120,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr5:91125117..91125120, -
2.47e-52FFCP PHASE2:Mm9::chr14:34007222..34007226,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr14:34007222..34007226, +
2.47e-52FFCP PHASE1:Mm9::chr17:48322531..48322538,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr17:48322531..48322538, +
2.47e-52FFCP PHASE2:Mm9::chr10:84019204..84019209,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr10:84019204..84019209, +
2.47e-52FFCP PHASE2:Mm9::chr19:21545650..21545664,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr19:21545650..21545664, -
2.47e-52FFCP PHASE1:Mm9::chr14:34007222..34007226,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr14:34007222..34007226, +
2.47e-52FFCP PHASE1:Mm9::chr19:21545650..21545664,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr19:21545650..21545664, -
2.47e-52FFCP PHASE2:Mm9::chr17:48322531..48322538,+#_c27bcdf4ec0ac2b792aecbe0679712dep@chr17:48322531..48322538, +
2.47e-52FFCP PHASE2:Mm9::chr3:51015481..51015493,-#_c27bcdf4ec0ac2b792aecbe0679712dep@chr3:51015481..51015493, -
3.69e-52FFCP PHASE2:Mm9::chr17:70883915..70883925,+#_9ecb0cd683c5dc0d9476e8f25b302facp@chr17:70883915..70883925, +
3.69e-52FFCP PHASE1:Mm9::chr17:70883915..70883925,+#_9ecb0cd683c5dc0d9476e8f25b302facp@chr17:70883915..70883925, +
3.69e-52FFCP PHASE2:Mm9::chr10:4797822..4797824,-#_9ecb0cd683c5dc0d9476e8f25b302facp@chr10:4797822..4797824, -
3.69e-52FFCP PHASE2:Mm9::chr13:83089547..83089553,-#_9ecb0cd683c5dc0d9476e8f25b302facp@chr13:83089547..83089553, -
3.69e-52FFCP PHASE1:Mm9::chr10:4797822..4797824,-#_9ecb0cd683c5dc0d9476e8f25b302facp@chr10:4797822..4797824, -
3.69e-52FFCP PHASE1:Mm9::chr13:83089547..83089553,-#_9ecb0cd683c5dc0d9476e8f25b302facp@chr13:83089547..83089553, -
5.51e-52FFCP PHASE2:Mm9::chr7:75278691..75278698,+#_fa25c57217a4869499ce68f77e85bc9ep@chr7:75278691..75278698, +
5.51e-52FFCP PHASE1:Mm9::chr7:108511327..108511332,-#_fa25c57217a4869499ce68f77e85bc9ep@chr7:108511327..108511332, -
5.51e-52FFCP PHASE1:Mm9::chr6:88787436..88787445,-#_fa25c57217a4869499ce68f77e85bc9ep@chr6:88787436..88787445, -
5.51e-52FFCP PHASE1:Mm9::chr19:24603529..24603552,-#_fa25c57217a4869499ce68f77e85bc9ep@chr19:24603529..24603552, -
5.51e-52FFCP PHASE1:Mm9::chr5:54445170..54445183,+#_fa25c57217a4869499ce68f77e85bc9ep@chr5:54445170..54445183, +
5.51e-52FFCP PHASE1:Mm9::chr1:93945286..93945297,+#_fa25c57217a4869499ce68f77e85bc9ep@chr1:93945286..93945297, +
5.51e-52FFCP PHASE2:Mm9::chr1:93945286..93945297,+#_fa25c57217a4869499ce68f77e85bc9ep@chr1:93945286..93945297, +
5.51e-52FFCP PHASE1:Mm9::chr1:182778780..182778789,-#_fa25c57217a4869499ce68f77e85bc9ep@chr1:182778780..182778789, -
5.51e-52FFCP PHASE1:Mm9::chr13:55997174..55997188,+#_fa25c57217a4869499ce68f77e85bc9ep@chr13:55997174..55997188, +
5.51e-52FFCP PHASE2:Mm9::chr2:134314492..134314494,-#_fa25c57217a4869499ce68f77e85bc9ep@chr2:134314492..134314494, -
5.51e-52FFCP PHASE2:Mm9::chr5:54445170..54445183,+#_fa25c57217a4869499ce68f77e85bc9ep@chr5:54445170..54445183, +
5.51e-52FFCP PHASE2:Mm9::chr1:182778780..182778789,-#_fa25c57217a4869499ce68f77e85bc9ep@chr1:182778780..182778789, -
5.51e-52FFCP PHASE1:Mm9::chr8:109293163..109293169,-#_fa25c57217a4869499ce68f77e85bc9ep@chr8:109293163..109293169, -
5.51e-52FFCP PHASE2:Mm9::chr19:24603529..24603552,-#_fa25c57217a4869499ce68f77e85bc9ep@chr19:24603529..24603552, -
5.51e-52FFCP PHASE2:Mm9::chr13:55997174..55997188,+#_fa25c57217a4869499ce68f77e85bc9ep@chr13:55997174..55997188, +
5.51e-52FFCP PHASE2:Mm9::chr7:108511327..108511332,-#_fa25c57217a4869499ce68f77e85bc9ep@chr7:108511327..108511332, -
5.51e-52FFCP PHASE1:Mm9::chr7:75278691..75278698,+#_fa25c57217a4869499ce68f77e85bc9ep@chr7:75278691..75278698, +
5.51e-52FFCP PHASE1:Mm9::chr8:124094361..124094366,-#_fa25c57217a4869499ce68f77e85bc9ep@chr8:124094361..124094366, -
5.51e-52FFCP PHASE2:Mm9::chr18:56664094..56664101,-#_fa25c57217a4869499ce68f77e85bc9ep@chr18:56664094..56664101, -
5.51e-52FFCP PHASE2:Mm9::chr6:88787436..88787445,-#_fa25c57217a4869499ce68f77e85bc9ep@chr6:88787436..88787445, -
5.51e-52FFCP PHASE2:Mm9::chr8:109293163..109293169,-#_fa25c57217a4869499ce68f77e85bc9ep@chr8:109293163..109293169, -
5.51e-52FFCP PHASE2:Mm9::chr3:51015411..51015416,-#_fa25c57217a4869499ce68f77e85bc9ep@chr3:51015411..51015416, -
5.51e-52FFCP PHASE2:Mm9::chr8:124094361..124094366,-#_fa25c57217a4869499ce68f77e85bc9ep@chr8:124094361..124094366, -
5.51e-52FFCP PHASE1:Mm9::chr3:51015411..51015416,-#_fa25c57217a4869499ce68f77e85bc9ep@chr3:51015411..51015416, -
5.51e-52FFCP PHASE1:Mm9::chr2:134314492..134314494,-#_fa25c57217a4869499ce68f77e85bc9ep@chr2:134314492..134314494, -
5.51e-52FFCP PHASE1:Mm9::chr18:56664094..56664101,-#_fa25c57217a4869499ce68f77e85bc9ep@chr18:56664094..56664101, -
1.18e-44FFCP PHASE2:Mm9::chr8:59915282..59915287,+#_132cdd6cfe224955e4c31f91c9d51651p@chr8:59915282..59915287, +
1.18e-44FFCP PHASE1:Mm9::chr2:152521243..152521254,+#_132cdd6cfe224955e4c31f91c9d51651p@chr2:152521243..152521254, +
1.18e-44FFCP PHASE2:Mm9::chr5:150046846..150046863,+#_132cdd6cfe224955e4c31f91c9d51651p@chr5:150046846..150046863, +
1.18e-44FFCP PHASE1:Mm9::chr5:150056307..150056318,-#_132cdd6cfe224955e4c31f91c9d51651p@chr5:150056307..150056318, -
1.18e-44FFCP PHASE2:Mm9::chr11:70250817..70250828,+#_132cdd6cfe224955e4c31f91c9d51651p8@Arrb2
1.18e-44FFCP PHASE1:Mm9::chr11:70250817..70250828,+#_132cdd6cfe224955e4c31f91c9d51651p8@Arrb2
1.18e-44FFCP PHASE1:Mm9::chrX:45628107..45628118,+#_132cdd6cfe224955e4c31f91c9d51651p@chrX:45628107..45628118, +
1.18e-44FFCP PHASE2:Mm9::chr2:152521243..152521254,+#_132cdd6cfe224955e4c31f91c9d51651p@chr2:152521243..152521254, +
1.18e-44FFCP PHASE2:Mm9::chrX:45628107..45628118,+#_132cdd6cfe224955e4c31f91c9d51651p@chrX:45628107..45628118, +
1.18e-44FFCP PHASE2:Mm9::chr5:150056307..150056318,-#_132cdd6cfe224955e4c31f91c9d51651p@chr5:150056307..150056318, -
1.18e-44FFCP PHASE1:Mm9::chr8:59915282..59915287,+#_132cdd6cfe224955e4c31f91c9d51651p@chr8:59915282..59915287, +
1.18e-44FFCP PHASE1:Mm9::chr10:12649672..12649677,-#_132cdd6cfe224955e4c31f91c9d51651p@chr10:12649672..12649677, -
1.18e-44FFCP PHASE2:Mm9::chr13:55629806..55629810,-#_132cdd6cfe224955e4c31f91c9d51651p3@Dok3
1.18e-44FFCP PHASE1:Mm9::chr5:150046846..150046863,+#_132cdd6cfe224955e4c31f91c9d51651p@chr5:150046846..150046863, +
1.18e-44FFCP PHASE1:Mm9::chr13:55629806..55629810,-#_132cdd6cfe224955e4c31f91c9d51651p3@Dok3
1.18e-44FFCP PHASE2:Mm9::chr2:122388084..122388093,-#_132cdd6cfe224955e4c31f91c9d51651p@chr2:122388084..122388093, -
1.18e-44FFCP PHASE1:Mm9::chr2:122388084..122388093,-#_132cdd6cfe224955e4c31f91c9d51651p@chr2:122388084..122388093, -
1.18e-44FFCP PHASE2:Mm9::chr10:12649672..12649677,-#_132cdd6cfe224955e4c31f91c9d51651p@chr10:12649672..12649677, -
1.66e-44FFCP PHASE1:Mm9::chr2:157619996..157620003,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr2:157619996..157620003, -
1.66e-44FFCP PHASE2:Mm9::chr7:148203451..148203468,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr7:148203451..148203468, -
1.66e-44FFCP PHASE1:Mm9::chr7:148203451..148203468,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr7:148203451..148203468, -
1.66e-44FFCP PHASE1:Mm9::chr13:41703140..41703184,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr13:41703140..41703184, -
1.66e-44FFCP PHASE1:Mm9::chr14:79050736..79050745,+#_f2851acdbf3eb0b7b92a238b7af66f80p@chr14:79050736..79050745, +
1.66e-44FFCP PHASE2:Mm9::chr13:41703140..41703184,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr13:41703140..41703184, -
1.66e-44FFCP PHASE2:Mm9::chr2:157619996..157620003,-#_f2851acdbf3eb0b7b92a238b7af66f80p@chr2:157619996..157620003, -
1.66e-44FFCP PHASE2:Mm9::chr14:79050736..79050745,+#_f2851acdbf3eb0b7b92a238b7af66f80p@chr14:79050736..79050745, +
2.33e-44FFCP PHASE1:Mm9::chr17:29773950..29773992,+#_d2f4bb10377a8c04899dc8e004642a98p@chr17:29773950..29773992, +
2.33e-44FFCP PHASE2:Mm9::chr14:61928697..61928708,+#_d2f4bb10377a8c04899dc8e004642a98p3@Arl11
2.33e-44FFCP PHASE2:Mm9::chr17:29773950..29773992,+#_d2f4bb10377a8c04899dc8e004642a98p@chr17:29773950..29773992, +
2.33e-44FFCP PHASE1:Mm9::chr4:46178925..46178936,+#_d2f4bb10377a8c04899dc8e004642a98p@chr4:46178925..46178936, +
2.33e-44FFCP PHASE1:Mm9::chr2:167402678..167402682,-#_d2f4bb10377a8c04899dc8e004642a98p@chr2:167402678..167402682, -
2.33e-44FFCP PHASE1:Mm9::chr7:50912014..50912019,-#_d2f4bb10377a8c04899dc8e004642a98p@chr7:50912014..50912019, -
2.33e-44FFCP PHASE2:Mm9::chr4:46178925..46178936,+#_d2f4bb10377a8c04899dc8e004642a98p@chr4:46178925..46178936, +
2.33e-44FFCP PHASE1:Mm9::chr14:61928697..61928708,+#_d2f4bb10377a8c04899dc8e004642a98p3@Arl11

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