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{{DOID
{{DOID
|id=DOID:201
|alt_id=
|name=connective tissue cancer
|namespace=disease_ontology
|def="A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue]
|xref=MSH:D009372;;SNOMEDCT_2010_1_31:126598008;;SNOMEDCT_2010_1_31:254821003;;UMLS_CUI:C0027656
|is_a=DOID:0060100
|synonym="connective tissue neoplasm" EXACT [CSP2005:2008-3809];;"neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008];;"Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:201
|is_a=DOID:0060100
|is_obsolete=
|located_in=
|located_in=
|name=connective tissue cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="connective tissue neoplasm" EXACT [CSP2005:2008-3809];;"neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008];;"Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003]
|union_of=
|xref=MSH:D009372;;SNOMEDCT_2010_1_31:126598008;;SNOMEDCT_2010_1_31:254821003;;UMLS_CUI:C0027656
}}
}}

Revision as of 10:33, 12 September 2014

Name:connective tissue cancer
Namespace:disease_ontology
Definition:"A musculoskeletal system cancer that is located_in connective tissue." [url:http://en.wikipedia.org/wiki/Connective_tissue]
Xrefs:
links:

MSH:D009372
SNOMEDCT_2010_1_31:126598008
SNOMEDCT_2010_1_31:254821003

UMLS_CUI:C0027656
Synonyms: "connective tissue neoplasm" EXACT [CSP2005:2008-3809]
"neoplasm of connective tissues (disorder)" EXACT [SNOMEDCT_2005_07_31:126598008]
"Tumour of connective tissue" EXACT [SNOMEDCT_2005_07_31:254821003]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060100(musculoskeletal system cancer)



Children


is a:DOID:200 (giant cell tumor),DOID:3347 (osteosarcoma),DOID:3355 (fibrosarcoma),DOID:3371 (chondrosarcoma),DOID:3939 (lipomatous cancer),DOID:4231 (histiocytoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:201 (connective tissue cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.27e-34FFCP PHASE2:Hg19::chr4:72885984..72885997,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr4:72885984..72885997, -
4.27e-34FFCP PHASE2:Hg19::chr3:2140234..2140235,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp36@CNTN4
4.27e-34FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp72@SYNE1
4.27e-34FFCP PHASE1:Hg19::chr1:154942376..154942386,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:154942376..154942386, -
4.27e-34FFCP PHASE2:Hg19::chr3:2141888..2141892,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2141888..2141892, -
4.27e-34FFCP PHASE2:Hg19::chr7:18439510..18439521,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr7:18439510..18439521, +
4.27e-34FFCP PHASE2:Hg19::chr18:74961699..74961708,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp5@GALR1
4.27e-34FFCP PHASE2:Hg19::chr10:33244345..33244348,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr10:33244345..33244348, -
4.27e-34FFCP PHASE1:Hg19::chr3:2141949..2141956,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp21@CNTN4
4.27e-34FFCP PHASE1:Hg19::chr12:70351971..70351975,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr12:70351971..70351975, +
4.27e-34FFCP PHASE2:Hg19::chr3:127441545..127441550,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp58@MGLL
4.27e-34FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr15:96181421..96181428, -
4.27e-34FFCP PHASE1:Hg19::chr7:18439523..18439524,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr7:18439523..18439524, +
4.27e-34FFCP PHASE1:Hg19::chr10:63700043..63700053,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr10:63700043..63700053, +
4.27e-34FFCP PHASE2:Hg19::chr6:152589291..152589303,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp38@SYNE1
4.27e-34FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:154942216..154942223, -
4.27e-34FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr11:30257128..30257133, -
4.27e-34FFCP PHASE1:Hg19::chr15:96181433..96181441,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr15:96181433..96181441, -
4.27e-34FFCP PHASE1:Hg19::chr13:109644091..109644095,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr13:109644091..109644095, +
4.27e-34FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr12:80818259..80818266, +
4.27e-34FFCP PHASE2:Hg19::chr2:190023542..190023552,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr2:190023542..190023552, -
4.27e-34FFCP PHASE2:Hg19::chr1:197873492..197873502,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:197873492..197873502, -
4.27e-34FFCP PHASE1:Hg19::chr3:2141746..2141758,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2141746..2141758, -
4.27e-34FFCP PHASE2:Hg19::chr3:106921055..106921063,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:106921055..106921063, -
4.27e-34FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr12:79920639..79920642, -
4.27e-34FFCP PHASE1:Hg19::chr1:228806586..228806591,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:228806586..228806591, +
4.27e-34FFCP PHASE1:Hg19::chr10:33244302..33244305,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr10:33244302..33244305, -
4.27e-34FFCP PHASE2:Hg19::chr8:107074457..107074458,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr8:107074457..107074458, +
4.27e-34FFCP PHASE1:Hg19::chr3:99508248..99508255,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:99508248..99508255, -
4.27e-34FFCP PHASE2:Hg19::chr3:177555440..177555446,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:177555440..177555446, -
4.27e-34FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr6:150735014..150735021, -
4.27e-34FFCP PHASE1:Hg19::chr1:145473286..145473295,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp5@AB464458
4.27e-34FFCP PHASE1:Hg19::chr11:30253410..30253431,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp2@FSHB
4.27e-34FFCP PHASE2:Hg19::chr12:108955070..108955084,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp16@SART3
4.27e-34FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr4:169935479..169935481, -
4.27e-34FFCP PHASE1:Hg19::chr3:1577559..1577577,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:1577559..1577577, -
4.27e-34FFCP PHASE2:Hg19::chr1:197889977..197890013,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:197889977..197890013, +
4.27e-34FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr9:79634044..79634053, -
4.27e-34FFCP PHASE1:Hg19::chr5:128083909..128083918,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr5:128083909..128083918, +
4.27e-34FFCP PHASE1:Hg19::chr1:197890538..197890548,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:197890538..197890548, +
4.27e-34FFCP PHASE1:Hg19::chr18:26425339..26425342,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr18:26425339..26425342, +
4.27e-34FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr11:101742272..101742276, -
4.27e-34FFCP PHASE1:Hg19::chr2:53436150..53436154,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr2:53436150..53436154, -
4.27e-34FFCP PHASE1:Hg19::chr14:88322648..88322655,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr14:88322648..88322655, -
4.27e-34FFCP PHASE2:Hg19::chr4:169935453..169935460,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr4:169935453..169935460, -
4.27e-34FFCP PHASE2:Hg19::chr3:1577545..1577547,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:1577545..1577547, -
4.27e-34FFCP PHASE2:Hg19::chr3:2141746..2141758,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2141746..2141758, -
4.27e-34FFCP PHASE2:Hg19::chr2:27806224..27806236,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp5@ZNF512
4.27e-34FFCP PHASE2:Hg19::chr14:83319766..83319776,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr14:83319766..83319776, -
4.27e-34FFCP PHASE1:Hg19::chr18:22251681..22251685,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr18:22251681..22251685, -
4.27e-34FFCP PHASE2:Hg19::chr5:39548606..39548614,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr5:39548606..39548614, -
4.27e-34FFCP PHASE2:Hg19::chr19:41281630..41281644,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp6@RAB4B
4.27e-34FFCP PHASE2:Hg19::chr10:54786954..54786965,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr10:54786954..54786965, -
4.27e-34FFCP PHASE1:Hg19::chr9:18993581..18993586,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr9:18993581..18993586, -
4.27e-34FFCP PHASE1:Hg19::chr3:30442082..30442087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:30442082..30442087, -
4.27e-34FFCP PHASE2:Hg19::chr3:157206082..157206087,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:157206082..157206087, -
4.27e-34FFCP PHASE2:Hg19::chr13:23027882..23027888,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr13:23027882..23027888, +
4.27e-34FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp43@SYNE1
4.27e-34FFCP PHASE2:Hg19::chr1:158989981..158989988,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:158989981..158989988, +
4.27e-34FFCP PHASE1:Hg19::chr4:145101707..145101712,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr4:145101707..145101712, +
4.27e-34FFCP PHASE2:Hg19::chr9:12848028..12848033,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr9:12848028..12848033, -
4.27e-34FFCP PHASE2:Hg19::chr3:2141813..2141822,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2141813..2141822, -
4.27e-34FFCP PHASE1:Hg19::chr9:13005000..13005036,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr9:13005000..13005036, -
4.27e-34FFCP PHASE1:Hg19::chr2:206927652..206927658,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr2:206927652..206927658, -
4.27e-34FFCP PHASE2:Hg19::chrX:135338329..135338337,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chrX:135338329..135338337, -
4.27e-34FFCP PHASE2:Hg19::chr21:38309134..38309135,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr21:38309134..38309135, -
4.27e-34FFCP PHASE2:Hg19::chr3:2139856..2139863,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2139856..2139863, +
4.27e-34FFCP PHASE2:Hg19::chr2:188420470..188420480,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr2:188420470..188420480, +
4.27e-34FFCP PHASE2:Hg19::chr1:192408018..192408032,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:192408018..192408032, -
4.27e-34FFCP PHASE2:Hg19::chr12:46660412..46660420,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp38@SLC38A1
4.27e-34FFCP PHASE2:Hg19::chr1:198595872..198595878,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:198595872..198595878, +
4.27e-34FFCP PHASE2:Hg19::chr2:74780643..74780673,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp30@LOXL3
4.27e-34FFCP PHASE1:Hg19::chr1:198595896..198595910,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:198595896..198595910, +
4.27e-34FFCP PHASE2:Hg19::chr6:142987388..142987398,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr6:142987388..142987398, -
4.27e-34FFCP PHASE2:Hg19::chr1:112916133..112916138,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:112916133..112916138, -
4.27e-34FFCP PHASE2:Hg19::chr3:163194047..163194081,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:163194047..163194081, -
4.27e-34FFCP PHASE1:Hg19::chr6:142993137..142993142,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr6:142993137..142993142, +
4.27e-34FFCP PHASE1:Hg19::chr1:113250450..113250457,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp18@RHOC
4.27e-34FFCP PHASE1:Hg19::chr13:23368370..23368374,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr13:23368370..23368374, +
4.27e-34FFCP PHASE1:Hg19::chr2:175614951..175614956,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr2:175614951..175614956, -
4.27e-34FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp7@LHX9
4.27e-34FFCP PHASE1:Hg19::chr18:22253588..22253590,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr18:22253588..22253590, +
4.27e-34FFCP PHASE1:Hg19::chr14:88220703..88220709,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr14:88220703..88220709, -
4.27e-34FFCP PHASE1:Hg19::chr12:71031325..71031332,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp19@PTPRB
4.27e-34FFCP PHASE2:Hg19::chr3:157230582..157230593,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:157230582..157230593, +
4.27e-34FFCP PHASE1:Hg19::chr19:56047661..56047668,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp4@SBK2
4.27e-34FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr6:152592460..152592465, -
4.27e-34FFCP PHASE1:Hg19::chr3:157230599..157230604,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:157230599..157230604, +
4.27e-34FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp63@SYNE1
4.27e-34FFCP PHASE2:Hg19::chr3:2141949..2141956,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp21@CNTN4
4.27e-34FFCP PHASE2:Hg19::chr7:18439523..18439524,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr7:18439523..18439524, +
4.27e-34FFCP PHASE1:Hg19::chr3:2141982..2141990,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp16@CNTN4
4.27e-34FFCP PHASE2:Hg19::chr15:96181433..96181441,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr15:96181433..96181441, -
4.27e-34FFCP PHASE2:Hg19::chr13:109644091..109644095,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr13:109644091..109644095, +
4.27e-34FFCP PHASE1:Hg19::chr10:63700076..63700086,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr10:63700076..63700086, +
4.27e-34FFCP PHASE2:Hg19::chr6:152589315..152589320,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp72@SYNE1
4.27e-34FFCP PHASE2:Hg19::chr1:154942376..154942386,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:154942376..154942386, -
4.27e-34FFCP PHASE2:Hg19::chr1:197886803..197886812,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp7@LHX9
4.27e-34FFCP PHASE2:Hg19::chr1:228806586..228806591,+#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr1:228806586..228806591, +
4.27e-34FFCP PHASE1:Hg19::chr3:2141759..2141771,-#_8ecbf1d24e09ee5b2b3545dd0b85df3dp@chr3:2141759..2141771, -

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