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{{DOID
{{DOID
|id=DOID:4305
|alt_id=
|name=bone giant cell tumor
|namespace=disease_ontology
|def="A giant cell tumor and bone cancer and bone tissue neoplasm that results_in the presence of multinucleated giant cells (osteoclast-like cell)." [url:http://en.wikipedia.org/wiki/Giant_cell_tumor_of_bone]
|xref=MSH:D018212;;NCI:C3738;;SNOMEDCT_2010_1_31:189891002;;SNOMEDCT_2010_1_31:57500000;;UMLS_CUI:C0206638
|is_a=DOID:200
|synonym="giant cell myeloma" RELATED [];;"Giant cell neoplasm of bone" EXACT [NCI2004_11_17:C3738];;"Giant cell tumor of bone (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:57500000];;"Giant cell tumor of bone NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189891002];;"osteoclastoma" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A giant cell tumor and bone cancer and bone tissue neoplasm that results_in the presence of multinucleated giant cells (osteoclast-like cell)." [url:http://en.wikipedia.org/wiki/Giant_cell_tumor_of_bone]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4305
|is_a=DOID:200
|is_obsolete=
|located_in=
|located_in=
|name=bone giant cell tumor
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="giant cell myeloma" RELATED [];;"Giant cell neoplasm of bone" EXACT [NCI2004_11_17:C3738];;"Giant cell tumor of bone (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:57500000];;"Giant cell tumor of bone NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189891002];;"osteoclastoma" RELATED []
|union_of=
|xref=MSH:D018212;;NCI:C3738;;SNOMEDCT_2010_1_31:189891002;;SNOMEDCT_2010_1_31:57500000;;UMLS_CUI:C0206638
}}
}}

Revision as of 10:35, 12 September 2014

Name:bone giant cell tumor
Namespace:disease_ontology
Definition:"A giant cell tumor and bone cancer and bone tissue neoplasm that results_in the presence of multinucleated giant cells (osteoclast-like cell)." [url:http://en.wikipedia.org/wiki/Giant_cell_tumor_of_bone]
Xrefs:
links:

MSH:D018212
NCI:C3738
SNOMEDCT_2010_1_31:189891002
SNOMEDCT_2010_1_31:57500000

UMLS_CUI:C0206638
Synonyms: "giant cell myeloma" RELATED []
"Giant cell neoplasm of bone" EXACT [NCI2004_11_17:C3738]
"Giant cell tumor of bone (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:57500000]
"Giant cell tumor of bone NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189891002]
"osteoclastoma" RELATED []

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:200(giant cell tumor)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4305 (bone giant cell tumor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_7ed111051ee50c8d468df346ae9ad8c4p@chr11:101742272..101742276, -
1.55e-98FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_7ed111051ee50c8d468df346ae9ad8c4p1@CU687665
1.55e-98FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_7ed111051ee50c8d468df346ae9ad8c4p1@CU687665
1.55e-98FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_7ed111051ee50c8d468df346ae9ad8c4p@chr11:101742272..101742276, -
2.74e-50FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_e0f6011b79f6ab97eaf39001b71c40d1p@chr16:51670868..51670880, -
4.52e-50FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_9ef95a30dedef4f0008d93116c9046f7p@chr3:106393655..106393659, +
4.52e-50FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_9ef95a30dedef4f0008d93116c9046f7p@chr3:106393655..106393659, +
4.52e-50FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_9ef95a30dedef4f0008d93116c9046f7p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_9ef95a30dedef4f0008d93116c9046f7p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_9ef95a30dedef4f0008d93116c9046f7p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_9ef95a30dedef4f0008d93116c9046f7p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_9ef95a30dedef4f0008d93116c9046f7p@chr4:34480309..34480321, -
4.52e-50FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_9ef95a30dedef4f0008d93116c9046f7p@chr4:34480309..34480321, -
3.61e-34FFCP PHASE2:Hg19::chr4:177796841..177796851,+#_ab62f2cc60b1de40435821172856fd1bp1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr4:177796841..177796851,+#_ab62f2cc60b1de40435821172856fd1bp1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr7:119353807..119353812,-#_ab62f2cc60b1de40435821172856fd1bp@chr7:119353807..119353812, -
3.61e-34FFCP PHASE2:Hg19::chr7:119353807..119353812,-#_ab62f2cc60b1de40435821172856fd1bp@chr7:119353807..119353812, -
5.04e-34FFCP PHASE2:Hg19::chr4:46093758..46093781,-#_f41b98629bbbd04915bd67b54a96957fp@chr4:46093758..46093781, -
5.04e-34FFCP PHASE1:Hg19::chr4:46093758..46093781,-#_f41b98629bbbd04915bd67b54a96957fp@chr4:46093758..46093781, -
5.04e-34FFCP PHASE2:Hg19::chr10:37004821..37004852,-#_f41b98629bbbd04915bd67b54a96957fp@chr10:37004821..37004852, -
5.04e-34FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_f41b98629bbbd04915bd67b54a96957fp@chr8:15939682..15939688, +
5.04e-34FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_f41b98629bbbd04915bd67b54a96957fp@chr8:15939682..15939688, +
5.04e-34FFCP PHASE2:Hg19::chrX:132231123..132231140,-#_f41b98629bbbd04915bd67b54a96957fp1@USP26
5.04e-34FFCP PHASE1:Hg19::chrX:132231123..132231140,-#_f41b98629bbbd04915bd67b54a96957fp1@USP26
5.04e-34FFCP PHASE1:Hg19::chr10:37004821..37004852,-#_f41b98629bbbd04915bd67b54a96957fp@chr10:37004821..37004852, -
7.05e-34FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_d4769f045c502929ac3c7af5f4396835p@chr6:155427848..155427862, +
7.05e-34FFCP PHASE1:Hg19::chr11:84019133..84019135,-#_d4769f045c502929ac3c7af5f4396835p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE2:Hg19::chrX:89462083..89462089,+#_d4769f045c502929ac3c7af5f4396835p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE1:Hg19::chrX:89462083..89462089,+#_d4769f045c502929ac3c7af5f4396835p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE2:Hg19::chr11:84019133..84019135,-#_d4769f045c502929ac3c7af5f4396835p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_d4769f045c502929ac3c7af5f4396835p@chr6:155427848..155427862, +
5.5e-31FFCP PHASE2:Hg19::chr3:106556598..106556609,-#_e496c2c709cd2dcf224911a87bc128acp@chr3:106556598..106556609, -
5.5e-31FFCP PHASE1:Hg19::chr3:106556598..106556609,-#_e496c2c709cd2dcf224911a87bc128acp@chr3:106556598..106556609, -
7.1e-28FFCP PHASE1:Hg19::chr6:68597008..68597030,-#_bb53379a2eb545bfdf745f2ac32e98b7p@chr6:68597008..68597030, -
7.1e-28FFCP PHASE2:Hg19::chr6:68597008..68597030,-#_bb53379a2eb545bfdf745f2ac32e98b7p@chr6:68597008..68597030, -
4.32e-26FFCP PHASE2:Hg19::chr5:27723923..27723927,-#_7deba072a8e859155596e968775af6cbp@chr5:27723923..27723927, -
4.32e-26FFCP PHASE1:Hg19::chr5:27723923..27723927,-#_7deba072a8e859155596e968775af6cbp@chr5:27723923..27723927, -
4.32e-26FFCP PHASE2:Hg19::chr11:81549961..81549965,-#_7deba072a8e859155596e968775af6cbp@chr11:81549961..81549965, -
4.32e-26FFCP PHASE1:Hg19::chr11:81549961..81549965,-#_7deba072a8e859155596e968775af6cbp@chr11:81549961..81549965, -
5.56e-26FFCP PHASE1:Hg19::chr5:153673183..153673186,+#_c80d487a6e817589c900afbb93dbfd90p@chr5:153673183..153673186, +
5.56e-26FFCP PHASE2:Hg19::chr4:189864018..189864037,+#_c80d487a6e817589c900afbb93dbfd90p@chr4:189864018..189864037, +
5.56e-26FFCP PHASE1:Hg19::chr4:189864018..189864037,+#_c80d487a6e817589c900afbb93dbfd90p@chr4:189864018..189864037, +
5.56e-26FFCP PHASE2:Hg19::chr5:167315847..167315852,+#_c80d487a6e817589c900afbb93dbfd90p@chr5:167315847..167315852, +
5.56e-26FFCP PHASE1:Hg19::chr5:167315847..167315852,+#_c80d487a6e817589c900afbb93dbfd90p@chr5:167315847..167315852, +
5.56e-26FFCP PHASE2:Hg19::chrX:89176902..89176913,+#_c80d487a6e817589c900afbb93dbfd90p1@TGIF2LX
5.56e-26FFCP PHASE1:Hg19::chrX:89176902..89176913,+#_c80d487a6e817589c900afbb93dbfd90p1@TGIF2LX
5.56e-26FFCP PHASE2:Hg19::chrX:124347061..124347063,-#_c80d487a6e817589c900afbb93dbfd90p@chrX:124347061..124347063, -
5.56e-26FFCP PHASE1:Hg19::chrX:124347061..124347063,-#_c80d487a6e817589c900afbb93dbfd90p@chrX:124347061..124347063, -
5.56e-26FFCP PHASE2:Hg19::chrX:132352373..132352384,-#_c80d487a6e817589c900afbb93dbfd90p1@TFDP3
5.56e-26FFCP PHASE1:Hg19::chrX:132352373..132352384,-#_c80d487a6e817589c900afbb93dbfd90p1@TFDP3
5.56e-26FFCP PHASE2:Hg19::chr5:153673183..153673186,+#_c80d487a6e817589c900afbb93dbfd90p@chr5:153673183..153673186, +
9.18e-26FFCP PHASE2:Hg19::chr18:14946224..14946236,+#_7cb554a3be6f1e1f1750765ed49edd61p1@FLJ44255
9.18e-26FFCP PHASE1:Hg19::chr18:14946224..14946236,+#_7cb554a3be6f1e1f1750765ed49edd61p1@FLJ44255
9.18e-26FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_7cb554a3be6f1e1f1750765ed49edd61p@chr7:12997533..12997536, +
9.18e-26FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_7cb554a3be6f1e1f1750765ed49edd61p@chr7:12997533..12997536, +
1.12e-25FFCP PHASE2:Hg19::chrX:55246809..55246816,+#_ea35632256d617fc4aa7782b62ea6c01p3@PAGE5
1.12e-25FFCP PHASE1:Hg19::chrX:55246809..55246816,+#_ea35632256d617fc4aa7782b62ea6c01p3@PAGE5
4.89e-23FFCP PHASE2:Hg19::chrX:55246818..55246829,+#_2ff1d85f571b4c90c88d903f14890bf9p2@PAGE5
4.89e-23FFCP PHASE1:Hg19::chrX:55246818..55246829,+#_2ff1d85f571b4c90c88d903f14890bf9p2@PAGE5
3.11e-21FFCP PHASE2:Hg19::chr8:119905427..119905438,-#_750b580536651862c4b550d01876a709p@chr8:119905427..119905438, -
3.11e-21FFCP PHASE2:Hg19::chr5:27742047..27742052,-#_750b580536651862c4b550d01876a709p@chr5:27742047..27742052, -
3.11e-21FFCP PHASE1:Hg19::chr5:27742047..27742052,-#_750b580536651862c4b550d01876a709p@chr5:27742047..27742052, -
3.11e-21FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_750b580536651862c4b550d01876a709p@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_750b580536651862c4b550d01876a709p@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr8:119905427..119905438,-#_750b580536651862c4b550d01876a709p@chr8:119905427..119905438, -
3.81e-21FFCP PHASE2:Hg19::chr13:87732242..87732246,-#_0b51979573f15edf592b0c0e5ff92a47p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE2:Hg19::chr19:9811101..9811112,-#_0b51979573f15edf592b0c0e5ff92a47p3@ZNF812
3.81e-21FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_0b51979573f15edf592b0c0e5ff92a47p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_0b51979573f15edf592b0c0e5ff92a47p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE1:Hg19::chr13:87732242..87732246,-#_0b51979573f15edf592b0c0e5ff92a47p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr19:9811101..9811112,-#_0b51979573f15edf592b0c0e5ff92a47p3@ZNF812
3.81e-21FFCP PHASE2:Hg19::chr5:135378750..135378757,+#_0b51979573f15edf592b0c0e5ff92a47p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE1:Hg19::chr5:135378750..135378757,+#_0b51979573f15edf592b0c0e5ff92a47p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE2:Hg19::chr2:145815206..145815208,+#_0b51979573f15edf592b0c0e5ff92a47p@chr2:145815206..145815208, +
3.81e-21FFCP PHASE1:Hg19::chr2:145815206..145815208,+#_0b51979573f15edf592b0c0e5ff92a47p@chr2:145815206..145815208, +
4.66e-21FFCP PHASE2:Hg19::chrX:140336680..140336697,-#_6cb1b3b1294637a4dfae3a283113a6fbp2@SPANXC
4.66e-21FFCP PHASE1:Hg19::chrX:140336680..140336697,-#_6cb1b3b1294637a4dfae3a283113a6fbp2@SPANXC
5.7e-21FFCP PHASE2:Hg19::chr2:33171944..33171945,+#_c2d5abe31e307e7978eaf7549d19dbfbp15@LTBP1
5.7e-21FFCP PHASE1:Hg19::chr2:33171944..33171945,+#_c2d5abe31e307e7978eaf7549d19dbfbp15@LTBP1
5.7e-21FFCP PHASE2:Hg19::chr5:142000787..142000807,-#_c2d5abe31e307e7978eaf7549d19dbfbp@chr5:142000787..142000807, -
5.7e-21FFCP PHASE1:Hg19::chr5:142000787..142000807,-#_c2d5abe31e307e7978eaf7549d19dbfbp@chr5:142000787..142000807, -
6.96e-21FFCP PHASE2:Hg19::chr5:81611412..81611423,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr18:63273310..63273317,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr5:81611412..81611423,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr11:28792916..28792929,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr11:28792916..28792929, +
6.96e-21FFCP PHASE1:Hg19::chr18:63273310..63273317,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr11:12061317..12061323,-#_7d29bb6144fa86059a7c4591caf2c2ddp@chr11:12061317..12061323, -
6.96e-21FFCP PHASE1:Hg19::chr11:28792916..28792929,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr11:28792916..28792929, +
6.96e-21FFCP PHASE2:Hg19::chr3:60761167..60761179,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr3:60761167..60761179,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr8:76774227..76774234,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr8:76774227..76774234, +
6.96e-21FFCP PHASE2:Hg19::chr8:76774227..76774234,+#_7d29bb6144fa86059a7c4591caf2c2ddp@chr8:76774227..76774234, +
6.96e-21FFCP PHASE2:Hg19::chr11:12061317..12061323,-#_7d29bb6144fa86059a7c4591caf2c2ddp@chr11:12061317..12061323, -

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