UBERON:0009616: Difference between revisions
From FANTOM5_SSTAR
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003080;;UBERON:0010286 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0006238 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:44, 27 June 2012
| Name: | presumptive midbrain | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: | "presumptive mesencephalon" EXACT [ZFA:0000148] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006598(presumptive structure) |
|---|---|
| develops_from: | UBERON:0003080(anterior neural tube),UBERON:0010286(midbrain neural tube) |
| part_of: | UBERON:0006238(future brain) |
Children
| develops from: | UBERON:0001891 (midbrain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009616 (presumptive midbrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1b | p5@C1orf130 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr4:56229918..56229919, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr9:139916913..139916917, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr4:56229918..56229919, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1b | p59@ANK3 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_baabf0186a421fdcb44ed6f1327e3b1b | p59@ANK3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_baabf0186a421fdcb44ed6f1327e3b1b | p@chr10:68718064..68718067, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_baabf0186a421fdcb44ed6f1327e3b1b | p5@C1orf130 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681 | p@chr18:74702556..74702558, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681 | p@chr1:65776926..65776928, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681 | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_4a9ed77780e042663876961ce40f7681 | p@chr5:57935348..57935354, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_4a9ed77780e042663876961ce40f7681 | p@chr18:74702556..74702558, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_4a9ed77780e042663876961ce40f7681 | p@chr1:65776926..65776928, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr8:53312058..53312067, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1 | p6@PKD1L2 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr10:22967066..22967069, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_fd15e9aaad25228b490d3fa3283124f1 | p6@PKD1L2 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr16:57309513..57309516, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_fd15e9aaad25228b490d3fa3283124f1 | p@chr8:53312058..53312067, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8 | p@chr1:44956567..44956571, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8 | p@chr11:7340444..7340448, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_254456d6fbe823ff210112ff47d89db8 | p@chr1:44956567..44956571, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_254456d6fbe823ff210112ff47d89db8 | p@chr11:7340444..7340448, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8 | p@chr14:95727527..95727529, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_254456d6fbe823ff210112ff47d89db8 | p@chr14:95727527..95727529, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p8@OMG |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr13:34922094..34922105, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr9:79516011..79516022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr14:105166013..105166017, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p8@OMG |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr13:43872447..43872452, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr13:43872447..43872452, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_8c3dd27703dc4ece4fe2acfddebe88b3 | p@chr13:34922094..34922105, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_ff95a1f8bb0937ba3280c131f5cb7751 | p@chrX:28627633..28627642, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751 | p@chr9:108178201..108178203, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_ff95a1f8bb0937ba3280c131f5cb7751 | p@chr9:108178201..108178203, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3 | p@chr3:50717966..50717971, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3 | p@chr20:52570026..52570037, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_7547c220bade4025ad634ea0d90eafe3 | p@chr6:134626498..134626502, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_7547c220bade4025ad634ea0d90eafe3 | p@chr3:50717966..50717971, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_7547c220bade4025ad634ea0d90eafe3 | p@chr6:89803656..89803659, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_7547c220bade4025ad634ea0d90eafe3 | p@chr20:52570026..52570037, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cba | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cba | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cba | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cba | p10@KCNJ10 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cba | p@chr17:70910145..70910148, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cba | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cba | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_436031363aab94f31bc1cde892493cba | p@chr9:19515907..19515918, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_436031363aab94f31bc1cde892493cba | p@chr18:26665245..26665249, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cba | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cba | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_436031363aab94f31bc1cde892493cba | p@chr17:70910145..70910148, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cba | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_436031363aab94f31bc1cde892493cba | p@chr17:3479944..3479947, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_436031363aab94f31bc1cde892493cba | p2@LOC285796 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_436031363aab94f31bc1cde892493cba | p21@PLEKHG1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_436031363aab94f31bc1cde892493cba | p@chr1:161275096..161275109, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_436031363aab94f31bc1cde892493cba | p@chr9:137240632..137240635, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_436031363aab94f31bc1cde892493cba | p@chr22:48980473..48980481, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_436031363aab94f31bc1cde892493cba | p10@KCNJ10 |
| 2.38e-43 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5 | p@chr19:40804786..40804795, - |
| 2.38e-43 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_667cd3f3268da96b304f83b7938ea2c5 | p@chr19:40804786..40804795, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274 | p@chr4:139891920..139891924, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274 | p4@C5orf64 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d6377f7a9b81a3747339baaa4db52274 | p4@C5orf64 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d6377f7a9b81a3747339baaa4db52274 | p@chr4:139891920..139891924, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chrX:13792462..13792477, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chrX:13792462..13792477, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chr5:152017019..152017026, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chr13:21100208..21100214, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_e13d96404ea38d08a9c831fa3c0bbea8 | p@chr13:21100208..21100214, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66e | p@chr2:135170207..135170218, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66e | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66e | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_be5a84b172489f72980baf05cce6c66e | p@chr1:161275238..161275250, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_be5a84b172489f72980baf05cce6c66e | p@chr2:135170207..135170218, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66e | p10@CELSR2 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66e | p@chr9:139911084..139911102, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_be5a84b172489f72980baf05cce6c66e | p10@CELSR2 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_be5a84b172489f72980baf05cce6c66e | p@chr17:71046459..71046462, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_be5a84b172489f72980baf05cce6c66e | p@chr9:139911084..139911102, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_3fcf60a9ff42833eea5c7b1c18a0982a | p19@ADARB2 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_3fcf60a9ff42833eea5c7b1c18a0982a | p@chr8:27522642..27522647, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_3fcf60a9ff42833eea5c7b1c18a0982a | p19@ADARB2 |
| 2.21e-40 | FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_3fcf60a9ff42833eea5c7b1c18a0982a | p@chrX:103046993..103046994, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_3fcf60a9ff42833eea5c7b1c18a0982a | p20@ADARB2 |
| 2.21e-40 | FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_3fcf60a9ff42833eea5c7b1c18a0982a | p@chrX:103046993..103046994, + |
