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{{CL
{{CL
|id=CL:0002596
|alt_id=
|name=smooth muscle cell of the carotid artery
|namespace=cell
|def="Smooth muscle cell of the carotid artery." [GOC:tfm]
|xref=
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:56Z
|def="Smooth muscle cell of the carotid artery." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002596
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the carotid artery
|namespace=cell
|obo_creation_date=2011-03-06T05:01:56Z
|part_of=UBERON:0005396
|part_of=UBERON:0005396
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:29, 12 September 2014

Name:smooth muscle cell of the carotid artery
Namespace:cell
Definition:"Smooth muscle cell of the carotid artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:56Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0005396(carotid artery segment)



Children


derives from:FF:0000171 (human smooth muscle cell of the carotid artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002596 (smooth muscle cell of the carotid artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE2:Hg19::chr1:169985638..169985652,-#_75463d8e80808552483d3c223d09534fp@chr1:169985638..169985652, -
4.52e-50FFCP PHASE1:Hg19::chr1:169985638..169985652,-#_75463d8e80808552483d3c223d09534fp@chr1:169985638..169985652, -
5.04e-34FFCP PHASE2:Hg19::chr1:25046857..25046871,+#_b716f59035711a1eac4523cd4e469b1bp@chr1:25046857..25046871, +
5.04e-34FFCP PHASE1:Hg19::chr1:25046857..25046871,+#_b716f59035711a1eac4523cd4e469b1bp@chr1:25046857..25046871, +
5.04e-34FFCP PHASE2:Hg19::chr7:120725207..120725210,+#_b716f59035711a1eac4523cd4e469b1bp@chr7:120725207..120725210, +
5.04e-34FFCP PHASE1:Hg19::chr7:120725207..120725210,+#_b716f59035711a1eac4523cd4e469b1bp@chr7:120725207..120725210, +
1.87e-31FFCP PHASE2:Hg19::chr21:30006488..30006499,+#_700c244e9670565389bc0c59f88b3d43p@chr21:30006488..30006499, +
1.87e-31FFCP PHASE1:Hg19::chr21:30006488..30006499,+#_700c244e9670565389bc0c59f88b3d43p@chr21:30006488..30006499, +
2.18e-31FFCP PHASE2:Hg19::chr17:80575169..80575172,-#_4b805a76bec7f55f1dd54a11fec4f8eap@chr17:80575169..80575172, -
2.18e-31FFCP PHASE1:Hg19::chr17:80575169..80575172,-#_4b805a76bec7f55f1dd54a11fec4f8eap@chr17:80575169..80575172, -
4.32e-26FFCP PHASE2:Hg19::chr7:82172409..82172413,+#_078b2831d13fe1892d33cc097cd655c0p@chr7:82172409..82172413, +
4.32e-26FFCP PHASE1:Hg19::chr7:82172409..82172413,+#_078b2831d13fe1892d33cc097cd655c0p@chr7:82172409..82172413, +
5.56e-26FFCP PHASE2:Hg19::chr9:114720368..114720377,-#_8c76ded36d3a1ea92a6f365f9b75e246p@chr9:114720368..114720377, -
5.56e-26FFCP PHASE1:Hg19::chr9:114720368..114720377,-#_8c76ded36d3a1ea92a6f365f9b75e246p@chr9:114720368..114720377, -
7.14e-26FFCP PHASE2:Hg19::chr11:120317216..120317220,+#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr11:120317216..120317220, +
7.14e-26FFCP PHASE1:Hg19::chr6:136397717..136397720,-#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr6:136397717..136397720, -
7.14e-26FFCP PHASE1:Hg19::chr11:120317216..120317220,+#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr11:120317216..120317220, +
7.14e-26FFCP PHASE2:Hg19::chr12:6806552..6806592,-#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr12:6806552..6806592, -
7.14e-26FFCP PHASE1:Hg19::chr12:6806552..6806592,-#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr12:6806552..6806592, -
7.14e-26FFCP PHASE2:Hg19::chr6:136397717..136397720,-#_d95a51b53668f5f5ec76ab3ab2c9cdbbp@chr6:136397717..136397720, -
3.53e-22FFCP PHASE2:Hg19::chr19:42724302..42724313,-#_8a505513da43f8f7700126ad9fb17dcbp4@DEDD2
3.53e-22FFCP PHASE1:Hg19::chr19:42724302..42724313,-#_8a505513da43f8f7700126ad9fb17dcbp4@DEDD2
1.01e-21FFCP PHASE2:Hg19::chr21:47539028..47539037,+#_9e242f4f2486fe93c6209f0013ceaf62p@chr21:47539028..47539037, +
1.01e-21FFCP PHASE1:Hg19::chr21:47539028..47539037,+#_9e242f4f2486fe93c6209f0013ceaf62p@chr21:47539028..47539037, +
3.81e-21FFCP PHASE1:Hg19::chr2:216578345..216578377,+#_4f62ad6cd8818702ff8d22faf3518456p@chr2:216578345..216578377, +
3.81e-21FFCP PHASE1:Hg19::chr3:51429598..51429609,+#_4f62ad6cd8818702ff8d22faf3518456p12@RBM15B
3.81e-21FFCP PHASE2:Hg19::chr22:36727653..36727660,-#_4f62ad6cd8818702ff8d22faf3518456p@chr22:36727653..36727660, -
3.81e-21FFCP PHASE2:Hg19::chr2:216578345..216578377,+#_4f62ad6cd8818702ff8d22faf3518456p@chr2:216578345..216578377, +
3.81e-21FFCP PHASE1:Hg19::chr22:36727653..36727660,-#_4f62ad6cd8818702ff8d22faf3518456p@chr22:36727653..36727660, -
3.81e-21FFCP PHASE2:Hg19::chr3:51429598..51429609,+#_4f62ad6cd8818702ff8d22faf3518456p12@RBM15B
4.66e-21FFCP PHASE2:Hg19::chr1:25046892..25046903,+#_5f1bd78ebf69a345f9c838828e007b89p@chr1:25046892..25046903, +
4.66e-21FFCP PHASE1:Hg19::chr1:25046892..25046903,+#_5f1bd78ebf69a345f9c838828e007b89p@chr1:25046892..25046903, +
5.7e-21FFCP PHASE2:Hg19::chr12:57628774..57628785,-#_8196b71f57a3823dadb2571665e51d5ap@chr12:57628774..57628785, -
5.7e-21FFCP PHASE2:Hg19::chr1:43917566..43917577,-#_8196b71f57a3823dadb2571665e51d5ap6@HYI
5.7e-21FFCP PHASE1:Hg19::chr12:65959570..65959573,-#_8196b71f57a3823dadb2571665e51d5ap@chr12:65959570..65959573, -
5.7e-21FFCP PHASE1:Hg19::chr1:43917566..43917577,-#_8196b71f57a3823dadb2571665e51d5ap6@HYI
5.7e-21FFCP PHASE1:Hg19::chr12:57628774..57628785,-#_8196b71f57a3823dadb2571665e51d5ap@chr12:57628774..57628785, -
5.7e-21FFCP PHASE2:Hg19::chr12:65959570..65959573,-#_8196b71f57a3823dadb2571665e51d5ap@chr12:65959570..65959573, -
2.26e-20FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_376259a5b8bbb174d9ad4d824d219db2p@chr2:134548872..134548879, -
2.26e-20FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_376259a5b8bbb174d9ad4d824d219db2p@chr2:134548872..134548879, -
1.24e-19FFCP PHASE2:Hg19::chr12:122261654..122261658,+#_0bd34687c431f28a52905cbfed657563p@chr12:122261654..122261658, +
1.24e-19FFCP PHASE1:Hg19::chr12:122261654..122261658,+#_0bd34687c431f28a52905cbfed657563p@chr12:122261654..122261658, +
8.4e-19FFCP PHASE1:Hg19::chr12:12939901..12939915,-#_b9ddbd76ff361fa2cc7b50bcd509d9adp@chr12:12939901..12939915, -
8.4e-19FFCP PHASE2:Hg19::chr12:12939901..12939915,-#_b9ddbd76ff361fa2cc7b50bcd509d9adp@chr12:12939901..12939915, -
3.16e-18FFCP PHASE1:Hg19::chr11:122073019..122073034,-#_8586553cbc7a3742efc4704285711ce8p@chr11:122073019..122073034, -
3.16e-18FFCP PHASE2:Hg19::chr11:122073019..122073034,-#_8586553cbc7a3742efc4704285711ce8p@chr11:122073019..122073034, -
5.48e-18FFCP PHASE2:Hg19::chr4:169022528..169022531,+#_90911976f32ceab6907a9cd7be098c7bp@chr4:169022528..169022531, +
5.48e-18FFCP PHASE1:Hg19::chr4:169022528..169022531,+#_90911976f32ceab6907a9cd7be098c7bp@chr4:169022528..169022531, +
6.27e-18FFCP PHASE1:Hg19::chr2:47109897..47109901,+#_9f78866de79316c0bb4ce935bbe90731p@chr2:47109897..47109901, +
6.27e-18FFCP PHASE2:Hg19::chr2:47109897..47109901,+#_9f78866de79316c0bb4ce935bbe90731p@chr2:47109897..47109901, +
6.48e-18FFCP PHASE2:Hg19::chr6:27198375..27198387,-#_330350b9fbd75df5b479347ffa3dde3dp@chr6:27198375..27198387, -
6.48e-18FFCP PHASE1:Hg19::chr6:27198375..27198387,-#_330350b9fbd75df5b479347ffa3dde3dp@chr6:27198375..27198387, -
6.48e-18FFCP PHASE2:Hg19::chr2:85173188..85173189,-#_330350b9fbd75df5b479347ffa3dde3dp@chr2:85173188..85173189, -
6.48e-18FFCP PHASE1:Hg19::chr2:85173188..85173189,-#_330350b9fbd75df5b479347ffa3dde3dp@chr2:85173188..85173189, -
7.67e-18FFCP PHASE2:Hg19::chr9:33797953..33797969,+#_8f1ee1008c151b591a311b08a46c7275p@chr9:33797953..33797969, +
7.67e-18FFCP PHASE1:Hg19::chr9:33797953..33797969,+#_8f1ee1008c151b591a311b08a46c7275p@chr9:33797953..33797969, +
1.62e-17FFCP PHASE1:Hg19::chr16:89595986..89595990,+#_7ba0b23ad513272f28026d93e5e519dap@chr16:89595986..89595990, +
1.62e-17FFCP PHASE2:Hg19::chr16:89595986..89595990,+#_7ba0b23ad513272f28026d93e5e519dap@chr16:89595986..89595990, +
2.99e-16FFCP PHASE2:Hg19::chr17:40672344..40672359,+#_347d940cbbcbd2351ec1ee2b205044edp4@ATP6V0A1
2.99e-16FFCP PHASE1:Hg19::chr17:40672344..40672359,+#_347d940cbbcbd2351ec1ee2b205044edp4@ATP6V0A1
4.79e-16FFCP PHASE1:Hg19::chr12:127768750..127768765,+#_c55453aede99117d5555280369eba02fp@chr12:127768750..127768765, +
4.79e-16FFCP PHASE2:Hg19::chr12:127768750..127768765,+#_c55453aede99117d5555280369eba02fp@chr12:127768750..127768765, +
1.15e-15FFCP PHASE2:Hg19::chr1:155932380..155932384,-#_c6f5745f8edd89363101d45d792ad0f7p45@ARHGEF2
1.15e-15FFCP PHASE1:Hg19::chr1:155932380..155932384,-#_c6f5745f8edd89363101d45d792ad0f7p45@ARHGEF2
1.33e-15FFCP PHASE2:Hg19::chr15:80841630..80841633,-#_5f2bb87e6787e55a24f0096c6d09389cp@chr15:80841630..80841633, -
1.33e-15FFCP PHASE1:Hg19::chr15:80841630..80841633,-#_5f2bb87e6787e55a24f0096c6d09389cp@chr15:80841630..80841633, -
1.54e-15FFCP PHASE2:Hg19::chr9:118431048..118431059,+#_9e930b727aad6c61e22cbf6ad1c05bcbp@chr9:118431048..118431059, +
1.54e-15FFCP PHASE2:Hg19::chr21:26713474..26713508,-#_9e930b727aad6c61e22cbf6ad1c05bcbp@chr21:26713474..26713508, -
1.54e-15FFCP PHASE1:Hg19::chr9:118431048..118431059,+#_9e930b727aad6c61e22cbf6ad1c05bcbp@chr9:118431048..118431059, +
1.54e-15FFCP PHASE1:Hg19::chr21:26713474..26713508,-#_9e930b727aad6c61e22cbf6ad1c05bcbp@chr21:26713474..26713508, -
1.78e-15FFCP PHASE2:Hg19::chr12:65959975..65959997,+#_fe76c0f306dd10764561b1120c1239ffp@chr12:65959975..65959997, +
1.78e-15FFCP PHASE1:Hg19::chr12:65959975..65959997,+#_fe76c0f306dd10764561b1120c1239ffp@chr12:65959975..65959997, +
2.05e-15FFCP PHASE2:Hg19::chr18:52495549..52495589,-#_26bbdd3fd81b49aef8b6759e6312fc96p@chr18:52495549..52495589, -
2.05e-15FFCP PHASE1:Hg19::chr18:52495549..52495589,-#_26bbdd3fd81b49aef8b6759e6312fc96p@chr18:52495549..52495589, -
3.37e-15FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_df028e78f4ae488649085297a0cea5d4p1@ENST00000517635
3.37e-15FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_df028e78f4ae488649085297a0cea5d4p1@ENST00000517635
3.46e-15FFCP PHASE1:Hg19::chr12:63097437..63097440,-#_8a951be72da7a8cc8952140249354caep@chr12:63097437..63097440, -
3.46e-15FFCP PHASE2:Hg19::chr12:63097437..63097440,-#_8a951be72da7a8cc8952140249354caep@chr12:63097437..63097440, -
3.99e-15FFCP PHASE2:Hg19::chr12:69633237..69633264,-#_e04c367a3b5ea94f98cb5f9ab6e8774dp@chr12:69633237..69633264, -
3.99e-15FFCP PHASE1:Hg19::chr12:69633237..69633264,-#_e04c367a3b5ea94f98cb5f9ab6e8774dp@chr12:69633237..69633264, -
5.52e-15FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_50b6a8b63043cbb866f580ffec10e31ap@chr3:106484411..106484418, +
5.52e-15FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_50b6a8b63043cbb866f580ffec10e31ap@chr3:106484411..106484418, +
9.65e-15FFCP PHASE2:Hg19::chr2:33437467..33437488,+#_b96b6c121832712fd4aa166ed18bd297p@chr2:33437467..33437488, +
9.65e-15FFCP PHASE1:Hg19::chr2:33437467..33437488,+#_b96b6c121832712fd4aa166ed18bd297p@chr2:33437467..33437488, +
2.21e-14FFCP PHASE2:Hg19::chr20:48140671..48140693,-#_f4b249d6cadc8c107ed3f9701180651ap@chr20:48140671..48140693, -
2.21e-14FFCP PHASE1:Hg19::chr20:48140671..48140693,-#_f4b249d6cadc8c107ed3f9701180651ap@chr20:48140671..48140693, -
5.44e-14FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_8cebcee497d3d59212694c28d7a83d71p8@MICAL2
5.44e-14FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_8cebcee497d3d59212694c28d7a83d71p8@MICAL2
7.07e-14FFCP PHASE1:Hg19::chr4:74736899..74736917,+#_13e7d5fc8ca79eaac5e11854bc4ffe5cp@chr4:74736899..74736917, +
7.07e-14FFCP PHASE2:Hg19::chr4:74736899..74736917,+#_13e7d5fc8ca79eaac5e11854bc4ffe5cp@chr4:74736899..74736917, +
8.06e-14FFCP PHASE2:Hg19::chr1:32257811..32257816,-#_b5458a442dd9cc20a97cfbc059da792dp1@BC098449
8.06e-14FFCP PHASE1:Hg19::chr1:32257811..32257816,-#_b5458a442dd9cc20a97cfbc059da792dp1@BC098449
8.28e-14FFCP PHASE2:Hg19::chr11:5385751..5385762,+#_144b2ac307626c601075fbf031f907b4p@chr11:5385751..5385762, +
8.28e-14FFCP PHASE2:Hg19::chr13:52027062..52027077,-#_144b2ac307626c601075fbf031f907b4p13@INTS6
8.28e-14FFCP PHASE1:Hg19::chr11:5385751..5385762,+#_144b2ac307626c601075fbf031f907b4p@chr11:5385751..5385762, +
8.28e-14FFCP PHASE1:Hg19::chr13:52027062..52027077,-#_144b2ac307626c601075fbf031f907b4p13@INTS6
1.07e-13FFCP PHASE1:Hg19::chr4:66960590..66960627,-#_b62759f5546bb86cc94f92957a6fc872p@chr4:66960590..66960627, -
1.07e-13FFCP PHASE2:Hg19::chr11:1006616..1006623,+#_b62759f5546bb86cc94f92957a6fc872p6@AP2A2
1.07e-13FFCP PHASE1:Hg19::chr11:1006616..1006623,+#_b62759f5546bb86cc94f92957a6fc872p6@AP2A2
1.07e-13FFCP PHASE2:Hg19::chr10:73619785..73619793,-#_b62759f5546bb86cc94f92957a6fc872p@chr10:73619785..73619793, -

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