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{{UBERON
{{UBERON
|id=UBERON:0004139
|alt_id=
|name=cardiogenic plate
|namespace=
|def="The first recognizable structure derived from the heart field" [GO:0003142]
|xref=EHDAA2:0000215;;EMAPA:16106;;VHOG:0000975
|is_a=UBERON:0005423
|synonym="cardiogenic crescent" RELATED [GO:0003142];;"heart rudiment" RELATED [];;"myocardial plate" EXACT [EHDAA2:0000215]
|comment=TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO
|comment=TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The first recognizable structure derived from the heart field" [GO:0003142]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003084
|develops_from=UBERON:0003084
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004139
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=cardiogenic plate
|namespace=
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cardiogenic crescent" RELATED [GO:0003142];;"heart rudiment" RELATED [];;"myocardial plate" EXACT [EHDAA2:0000215]
|union_of=
|xref=EHDAA2:0000215;;EMAPA:16106;;VHOG:0000975
}}
}}

Revision as of 11:27, 12 September 2014

Name:cardiogenic plate
Definition:"The first recognizable structure derived from the heart field" [GO:0003142]
Xrefs:
links:

EHDAA2:0000215
EMAPA:16106

VHOG:0000975
Synonyms: "cardiogenic crescent" RELATED [GO:0003142]
"heart rudiment" RELATED []
"myocardial plate" EXACT [EHDAA2:0000215]
Comments:TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003084(heart primordium)
part_of:UBERON:0000922(embryo)



Children

develops from:UBERON:0004291 (heart rudiment)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004139 (cardiogenic plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.09e-81FFCP PHASE1:Mm9::chr1:137747392..137747402,-#_e33304ad35cc77872abc2b5c6f8c31c5p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr9:24549775..24549776,-#_e33304ad35cc77872abc2b5c6f8c31c5p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE1:Mm9::chr4:147375434..147375447,+#_e33304ad35cc77872abc2b5c6f8c31c5p@chr4:147375434..147375447, +
1.09e-81FFCP PHASE1:Mm9::chr9:24549775..24549776,-#_e33304ad35cc77872abc2b5c6f8c31c5p@chr9:24549775..24549776, -
1.09e-81FFCP PHASE2:Mm9::chr1:137747392..137747402,-#_e33304ad35cc77872abc2b5c6f8c31c5p@chr1:137747392..137747402, -
1.09e-81FFCP PHASE2:Mm9::chr4:147375434..147375447,+#_e33304ad35cc77872abc2b5c6f8c31c5p@chr4:147375434..147375447, +
1.88e-78FFCP PHASE1:Mm9::chr4:140980456..140980463,+#_8e22d1030c5ae49756d104e6ea9d844ap@chr4:140980456..140980463, +
1.88e-78FFCP PHASE2:Mm9::chr4:140980456..140980463,+#_8e22d1030c5ae49756d104e6ea9d844ap@chr4:140980456..140980463, +
1.92e-77FFCP PHASE1:Mm9::chr12:113728951..113728965,+#_454a59e0ab45ae3b8a8a89074936aa6bp@chr12:113728951..113728965, +
1.92e-77FFCP PHASE2:Mm9::chr12:113728951..113728965,+#_454a59e0ab45ae3b8a8a89074936aa6bp@chr12:113728951..113728965, +
1.92e-77FFCP PHASE1:Mm9::chr1:137737483..137737497,-#_454a59e0ab45ae3b8a8a89074936aa6bp@chr1:137737483..137737497, -
1.92e-77FFCP PHASE2:Mm9::chr1:137737483..137737497,-#_454a59e0ab45ae3b8a8a89074936aa6bp@chr1:137737483..137737497, -
2.14e-77FFCP PHASE1:Mm9::chr4:147375200..147375220,+#_43ba11150388c3844f59ce18695c0d75p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE2:Mm9::chr4:147375200..147375220,+#_43ba11150388c3844f59ce18695c0d75p@chr4:147375200..147375220, +
2.14e-77FFCP PHASE1:Mm9::chr19:36187511..36187515,-#_43ba11150388c3844f59ce18695c0d75p@chr19:36187511..36187515, -
2.14e-77FFCP PHASE2:Mm9::chr19:36187511..36187515,-#_43ba11150388c3844f59ce18695c0d75p@chr19:36187511..36187515, -
8.14e-77FFCP PHASE1:Mm9::chr15:88850827..88850850,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr14:55571909..55571953,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE2:Mm9::chr14:55579265..55579297,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE1:Mm9::chr14:55563577..55563611,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744333..137744352,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744668..137744681,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584197..55584239,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE2:Mm9::chr14:55563577..55563611,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55563577..55563611, -
8.14e-77FFCP PHASE1:Mm9::chr1:137743272..137743307,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE1:Mm9::chr1:137747289..137747313,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE1:Mm9::chr14:55584272..55584298,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744668..137744681,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744668..137744681, -
8.14e-77FFCP PHASE1:Mm9::chr11:58815923..58815951,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568737..55568746,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744550..137744565,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr5:120286706..120286736,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE1:Mm9::chr14:55586837..55586880,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE2:Mm9::chr4:147375901..147375913,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr14:55572120..55572173,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr19:36193772..36193793,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE2:Mm9::chr14:55586837..55586880,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55586837..55586880, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568937..55568988,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE2:Mm9::chr15:88850827..88850850,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p2@Mov10l1
8.14e-77FFCP PHASE1:Mm9::chr1:137744611..137744621,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744611..137744621, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568790..55568803,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE1:Mm9::chr14:55579265..55579297,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55579265..55579297, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747953..137747967,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747953..137747967,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747953..137747967, -
8.14e-77FFCP PHASE2:Mm9::chr11:65461897..65461929,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584272..55584298,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584272..55584298, -
8.14e-77FFCP PHASE1:Mm9::chr4:147375901..147375913,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr4:147375901..147375913, +
8.14e-77FFCP PHASE2:Mm9::chr1:137744636..137744654,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744333..137744352,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744333..137744352, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747382..137747385,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE2:Mm9::chr14:55584663..55584731,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr14:55572120..55572173,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55572120..55572173, +
8.14e-77FFCP PHASE2:Mm9::chr1:137743272..137743307,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137743272..137743307, +
8.14e-77FFCP PHASE2:Mm9::chr14:55581579..55581620,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55571909..55571953,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55571909..55571953, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584197..55584239,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584197..55584239, -
8.14e-77FFCP PHASE1:Mm9::chr14:55565785..55565833,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137745434..137745445,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr14:55581579..55581620,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55581579..55581620, -
8.14e-77FFCP PHASE2:Mm9::chr14:55565785..55565833,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55565785..55565833, -
8.14e-77FFCP PHASE1:Mm9::chr1:137744550..137744565,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744550..137744565, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568737..55568746,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568737..55568746, -
8.14e-77FFCP PHASE1:Mm9::chr1:137747382..137747385,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747382..137747385, -
8.14e-77FFCP PHASE1:Mm9::chr14:55584663..55584731,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55584663..55584731, -
8.14e-77FFCP PHASE1:Mm9::chr5:120286706..120286736,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr5:120286706..120286736, +
8.14e-77FFCP PHASE2:Mm9::chr1:137745434..137745445,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137745434..137745445, +
8.14e-77FFCP PHASE1:Mm9::chr1:137744636..137744654,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744636..137744654, +
8.14e-77FFCP PHASE2:Mm9::chr14:55568937..55568988,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568937..55568988, -
8.14e-77FFCP PHASE1:Mm9::chr19:36193772..36193793,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr19:36193772..36193793, -
8.14e-77FFCP PHASE1:Mm9::chr11:65461897..65461929,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr11:65461897..65461929, -
8.14e-77FFCP PHASE2:Mm9::chr1:137747289..137747313,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137747289..137747313, +
8.14e-77FFCP PHASE2:Mm9::chr11:58815923..58815951,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr11:58815923..58815951, -
8.14e-77FFCP PHASE1:Mm9::chr14:55568790..55568803,-#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr14:55568790..55568803, -
8.14e-77FFCP PHASE2:Mm9::chr1:137744611..137744621,+#_337c7082c8c2ac7ecc4ba79deffa1ca1p@chr1:137744611..137744621, +
1.2e-73FFCP PHASE1:Mm9::chr1:137742152..137742184,-#_92bb60a5d4125ed7abb10711d0799325p@chr1:137742152..137742184, -
1.2e-73FFCP PHASE2:Mm9::chr1:137742152..137742184,-#_92bb60a5d4125ed7abb10711d0799325p@chr1:137742152..137742184, -
1.46e-72FFCP PHASE2:Mm9::chr7:4473478..4473505,-#_f2e11997b831a153006a1cb69a2ed4f1p2@Tnni3
1.46e-72FFCP PHASE2:Mm9::chr14:55577329..55577367,-#_f2e11997b831a153006a1cb69a2ed4f1p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE2:Mm9::chr1:137742470..137742481,+#_f2e11997b831a153006a1cb69a2ed4f1p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE2:Mm9::chr16:5431481..5431510,+#_f2e11997b831a153006a1cb69a2ed4f1p@chr16:5431481..5431510, +
1.46e-72FFCP PHASE1:Mm9::chr7:4473478..4473505,-#_f2e11997b831a153006a1cb69a2ed4f1p2@Tnni3
1.46e-72FFCP PHASE1:Mm9::chr1:137742470..137742481,+#_f2e11997b831a153006a1cb69a2ed4f1p@chr1:137742470..137742481, +
1.46e-72FFCP PHASE1:Mm9::chr14:55577329..55577367,-#_f2e11997b831a153006a1cb69a2ed4f1p@chr14:55577329..55577367, -
1.46e-72FFCP PHASE1:Mm9::chr16:5431481..5431510,+#_f2e11997b831a153006a1cb69a2ed4f1p@chr16:5431481..5431510, +
1.63e-72FFCP PHASE1:Mm9::chr2:17382210..17382221,-#_a157c5def70328c63e09d872a6247fd5p5@Nebl
1.63e-72FFCP PHASE2:Mm9::chr16:38713504..38713520,-#_a157c5def70328c63e09d872a6247fd5p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr5:58108164..58108178,+#_a157c5def70328c63e09d872a6247fd5p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr2:17382210..17382221,-#_a157c5def70328c63e09d872a6247fd5p5@Nebl
1.63e-72FFCP PHASE1:Mm9::chr2:113880065..113880076,+#_a157c5def70328c63e09d872a6247fd5p1@ENSMUST00000154140
1.63e-72FFCP PHASE2:Mm9::chr2:113880065..113880076,+#_a157c5def70328c63e09d872a6247fd5p1@ENSMUST00000154140
1.63e-72FFCP PHASE1:Mm9::chr19:36193739..36193752,-#_a157c5def70328c63e09d872a6247fd5p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE2:Mm9::chr19:36193739..36193752,-#_a157c5def70328c63e09d872a6247fd5p@chr19:36193739..36193752, -
1.63e-72FFCP PHASE1:Mm9::chr16:38713504..38713520,-#_a157c5def70328c63e09d872a6247fd5p11@Arhgap31
1.63e-72FFCP PHASE1:Mm9::chr10:53062244..53062249,+#_a157c5def70328c63e09d872a6247fd5p@chr10:53062244..53062249, +
1.63e-72FFCP PHASE2:Mm9::chr5:58108164..58108178,+#_a157c5def70328c63e09d872a6247fd5p@chr5:58108164..58108178, +
1.63e-72FFCP PHASE2:Mm9::chr10:53062244..53062249,+#_a157c5def70328c63e09d872a6247fd5p@chr10:53062244..53062249, +
1.82e-72FFCP PHASE1:Mm9::chr9:24529233..24529237,-#_01790abf9a716b15a3826fe2ea3fd98cp@chr9:24529233..24529237, -
1.82e-72FFCP PHASE2:Mm9::chr9:24529233..24529237,-#_01790abf9a716b15a3826fe2ea3fd98cp@chr9:24529233..24529237, -
2.03e-72FFCP PHASE2:Mm9::chr2:30851059..30851089,+#_0ebfd5d6acc017fc79382df0de8d65c1p6@Usp20
2.03e-72FFCP PHASE1:Mm9::chr2:30851059..30851089,+#_0ebfd5d6acc017fc79382df0de8d65c1p6@Usp20

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