Personal tools

UBERON:0004902: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004902
|alt_id=
|name=urogenital sinus epithelium
|namespace=
|def="The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
|xref=EHDAA2:0004061
|is_a=UBERON:0006554;;UBERON:0009846
|synonym="epithelium of urogenital sinus" EXACT [OBOL:automatic];;"UGE" EXACT [PMID:18977204]
|comment=we follow EHDAA2 in dividing the UGS into epithelium and lumen
|comment=we follow EHDAA2 in dividing the UGS into epithelium and lumen
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0009846
|develops_from=UBERON:0009846
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004902
|is_a=UBERON:0009846
|is_obsolete=
|located_in=
|located_in=
|name=urogenital sinus epithelium
|namespace=
|obo_creation_date=
|part_of=UBERON:0000164
|part_of=UBERON:0000164
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelium of urogenital sinus" EXACT [OBOL:automatic];;"UGE" EXACT [PMID:18977204]
|union_of=
|xref=EHDAA2:0004061
}}
}}

Revision as of 11:32, 12 September 2014

Name:urogenital sinus epithelium
Definition:"The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
Xrefs:
links:
EHDAA2:0004061
Synonyms: "epithelium of urogenital sinus" EXACT [OBOL:automatic]
"UGE" EXACT [PMID:18977204]
Comments:we follow EHDAA2 in dividing the UGS into epithelium and lumen

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009846(embryonic cloacal epithelium)
develops_from:UBERON:0009846(embryonic cloacal epithelium)
part_of:UBERON:0000164(primitive urogenital sinus)



Children

is a:UBERON:0009847 (prostate field)
part of:UBERON:0009847 (prostate field)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004902 (urogenital sinus epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr1:73048139..73048141,+#_8723413afa513aaa41c0931e096ed76ap@chr1:73048139..73048141, +
3.07e-86FFCP PHASE2:Mm9::chrX:75093387..75093390,-#_8723413afa513aaa41c0931e096ed76ap@chrX:75093387..75093390, -
3.07e-86FFCP PHASE2:Mm9::chrX:137642090..137642093,-#_8723413afa513aaa41c0931e096ed76ap8@Col4a6
3.07e-86FFCP PHASE1:Mm9::chr6:42539866..42539870,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42539866..42539870, -
3.07e-86FFCP PHASE2:Mm9::chr7:55008002..55008008,-#_8723413afa513aaa41c0931e096ed76ap@chr7:55008002..55008008, -
3.07e-86FFCP PHASE2:Mm9::chr9:122970758..122970759,+#_8723413afa513aaa41c0931e096ed76ap@chr9:122970758..122970759, +
3.07e-86FFCP PHASE1:Mm9::chr2:137020090..137020093,+#_8723413afa513aaa41c0931e096ed76ap@chr2:137020090..137020093, +
3.07e-86FFCP PHASE1:Mm9::chr6:42548966..42548969,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42548966..42548969, -
3.07e-86FFCP PHASE2:Mm9::chr2:137020090..137020093,+#_8723413afa513aaa41c0931e096ed76ap@chr2:137020090..137020093, +
3.07e-86FFCP PHASE2:Mm9::chr6:42547300..42547314,-#_8723413afa513aaa41c0931e096ed76ap7@Fam115e
3.07e-86FFCP PHASE1:Mm9::chr6:42547401..42547411,-#_8723413afa513aaa41c0931e096ed76ap9@Fam115e
3.07e-86FFCP PHASE1:Mm9::chr6:57789909..57789916,-#_8723413afa513aaa41c0931e096ed76ap@chr6:57789909..57789916, -
3.07e-86FFCP PHASE2:Mm9::chr1:73048139..73048141,+#_8723413afa513aaa41c0931e096ed76ap@chr1:73048139..73048141, +
3.07e-86FFCP PHASE2:Mm9::chr2:36098306..36098309,+#_8723413afa513aaa41c0931e096ed76ap5@Ptgs1
3.07e-86FFCP PHASE1:Mm9::chr16:20186645..20186650,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20186645..20186650, +
3.07e-86FFCP PHASE1:Mm9::chr2:36098306..36098309,+#_8723413afa513aaa41c0931e096ed76ap5@Ptgs1
3.07e-86FFCP PHASE2:Mm9::chr4:152405146..152405150,+#_8723413afa513aaa41c0931e096ed76ap@chr4:152405146..152405150, +
3.07e-86FFCP PHASE2:Mm9::chr16:20186583..20186592,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20186583..20186592, +
3.07e-86FFCP PHASE2:Mm9::chr6:57789909..57789916,-#_8723413afa513aaa41c0931e096ed76ap@chr6:57789909..57789916, -
3.07e-86FFCP PHASE2:Mm9::chr6:42548966..42548969,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42548966..42548969, -
3.07e-86FFCP PHASE2:Mm9::chr6:42536469..42536478,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42536469..42536478, -
3.07e-86FFCP PHASE1:Mm9::chr1:72981474..72981498,+#_8723413afa513aaa41c0931e096ed76ap@chr1:72981474..72981498, +
3.07e-86FFCP PHASE2:Mm9::chr6:42536000..42536005,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42536000..42536005, -
3.07e-86FFCP PHASE2:Mm9::chr4:122366201..122366206,-#_8723413afa513aaa41c0931e096ed76ap@chr4:122366201..122366206, -
3.07e-86FFCP PHASE2:Mm9::chr12:66314493..66314501,-#_8723413afa513aaa41c0931e096ed76ap1@uc007nrj.1
3.07e-86FFCP PHASE2:Mm9::chr6:42543450..42543455,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42543450..42543455, -
3.07e-86FFCP PHASE2:Mm9::chr16:20188895..20188904,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20188895..20188904, +
3.07e-86FFCP PHASE1:Mm9::chr8:126864466..126864469,+#_8723413afa513aaa41c0931e096ed76ap@chr8:126864466..126864469, +
3.07e-86FFCP PHASE1:Mm9::chr6:54242736..54242738,-#_8723413afa513aaa41c0931e096ed76ap@chr6:54242736..54242738, -
3.07e-86FFCP PHASE2:Mm9::chr1:72981474..72981498,+#_8723413afa513aaa41c0931e096ed76ap@chr1:72981474..72981498, +
3.07e-86FFCP PHASE1:Mm9::chr7:55002686..55002717,+#_8723413afa513aaa41c0931e096ed76ap@chr7:55002686..55002717, +
3.07e-86FFCP PHASE2:Mm9::chr6:122422716..122422728,-#_8723413afa513aaa41c0931e096ed76ap15@Rimklb
3.07e-86FFCP PHASE2:Mm9::chr6:42537176..42537182,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42537176..42537182, -
3.07e-86FFCP PHASE1:Mm9::chr16:96752893..96752921,+#_8723413afa513aaa41c0931e096ed76ap@chr16:96752893..96752921, +
3.07e-86FFCP PHASE1:Mm9::chr6:42551615..42551622,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42551615..42551622, -
3.07e-86FFCP PHASE1:Mm9::chr16:20188864..20188875,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20188864..20188875, +
3.07e-86FFCP PHASE2:Mm9::chr6:42547375..42547383,-#_8723413afa513aaa41c0931e096ed76ap10@Fam115e
3.07e-86FFCP PHASE1:Mm9::chr10:75355747..75355754,-#_8723413afa513aaa41c0931e096ed76ap@chr10:75355747..75355754, -
3.07e-86FFCP PHASE2:Mm9::chr6:42535901..42535907,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42535901..42535907, -
3.07e-86FFCP PHASE2:Mm9::chr12:93026806..93026816,-#_8723413afa513aaa41c0931e096ed76ap12@Ston2
3.07e-86FFCP PHASE2:Mm9::chr12:114453231..114453265,-#_8723413afa513aaa41c0931e096ed76ap@chr12:114453231..114453265, -
3.07e-86FFCP PHASE1:Mm9::chr6:42535984..42535996,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42535984..42535996, -
3.07e-86FFCP PHASE1:Mm9::chr5:33251992..33251995,+#_8723413afa513aaa41c0931e096ed76ap@chr5:33251992..33251995, +
3.07e-86FFCP PHASE2:Mm9::chr16:20186617..20186622,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20186617..20186622, +
3.07e-86FFCP PHASE1:Mm9::chr7:55028223..55028250,+#_8723413afa513aaa41c0931e096ed76ap@chr7:55028223..55028250, +
3.07e-86FFCP PHASE2:Mm9::chr6:54242736..54242738,-#_8723413afa513aaa41c0931e096ed76ap@chr6:54242736..54242738, -
3.07e-86FFCP PHASE1:Mm9::chr6:42535216..42535225,+#_8723413afa513aaa41c0931e096ed76ap@chr6:42535216..42535225, +
3.07e-86FFCP PHASE2:Mm9::chr6:42551615..42551622,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42551615..42551622, -
3.07e-86FFCP PHASE1:Mm9::chr9:122970904..122970907,-#_8723413afa513aaa41c0931e096ed76ap@chr9:122970904..122970907, -
3.07e-86FFCP PHASE1:Mm9::chr19:11353179..11353189,-#_8723413afa513aaa41c0931e096ed76ap@chr19:11353179..11353189, -
3.07e-86FFCP PHASE1:Mm9::chr6:122422716..122422728,-#_8723413afa513aaa41c0931e096ed76ap15@Rimklb
3.07e-86FFCP PHASE2:Mm9::chr6:42536009..42536044,+#_8723413afa513aaa41c0931e096ed76ap@chr6:42536009..42536044, +
3.07e-86FFCP PHASE1:Mm9::chr6:42547300..42547314,-#_8723413afa513aaa41c0931e096ed76ap7@Fam115e
3.07e-86FFCP PHASE2:Mm9::chr6:42535739..42535752,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42535739..42535752, -
3.07e-86FFCP PHASE1:Mm9::chrX:75093379..75093383,+#_8723413afa513aaa41c0931e096ed76ap@chrX:75093379..75093383, +
3.07e-86FFCP PHASE2:Mm9::chr11:57320631..57320636,-#_8723413afa513aaa41c0931e096ed76ap5@Fam114a2
3.07e-86FFCP PHASE1:Mm9::chr7:55008002..55008008,-#_8723413afa513aaa41c0931e096ed76ap@chr7:55008002..55008008, -
3.07e-86FFCP PHASE1:Mm9::chrX:137642090..137642093,-#_8723413afa513aaa41c0931e096ed76ap8@Col4a6
3.07e-86FFCP PHASE1:Mm9::chr6:22342065..22342073,-#_8723413afa513aaa41c0931e096ed76ap@chr6:22342065..22342073, -
3.07e-86FFCP PHASE2:Mm9::chr6:42539787..42539797,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42539787..42539797, -
3.07e-86FFCP PHASE1:Mm9::chr6:42536469..42536478,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42536469..42536478, -
3.07e-86FFCP PHASE2:Mm9::chr9:7867982..7867988,-#_8723413afa513aaa41c0931e096ed76ap@chr9:7867982..7867988, -
3.07e-86FFCP PHASE1:Mm9::chr6:42551847..42551862,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42551847..42551862, -
3.07e-86FFCP PHASE1:Mm9::chr9:7699504..7699515,+#_8723413afa513aaa41c0931e096ed76ap@chr9:7699504..7699515, +
3.07e-86FFCP PHASE1:Mm9::chr4:102102677..102102684,+#_8723413afa513aaa41c0931e096ed76ap@chr4:102102677..102102684, +
3.07e-86FFCP PHASE2:Mm9::chr10:75355747..75355754,-#_8723413afa513aaa41c0931e096ed76ap@chr10:75355747..75355754, -
3.07e-86FFCP PHASE1:Mm9::chr1:37769602..37769611,-#_8723413afa513aaa41c0931e096ed76ap@chr1:37769602..37769611, -
3.07e-86FFCP PHASE1:Mm9::chr16:20188882..20188884,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20188882..20188884, +
3.07e-86FFCP PHASE2:Mm9::chr6:42547389..42547396,-#_8723413afa513aaa41c0931e096ed76ap14@Fam115e
3.07e-86FFCP PHASE1:Mm9::chr9:36341608..36341609,-#_8723413afa513aaa41c0931e096ed76ap@chr9:36341608..36341609, -
3.07e-86FFCP PHASE2:Mm9::chr6:22342065..22342073,-#_8723413afa513aaa41c0931e096ed76ap@chr6:22342065..22342073, -
3.07e-86FFCP PHASE1:Mm9::chr6:42536000..42536005,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42536000..42536005, -
3.07e-86FFCP PHASE1:Mm9::chr6:42543450..42543455,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42543450..42543455, -
3.07e-86FFCP PHASE2:Mm9::chr16:20186645..20186650,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20186645..20186650, +
3.07e-86FFCP PHASE2:Mm9::chr6:42541927..42541932,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42541927..42541932, -
3.07e-86FFCP PHASE1:Mm9::chr6:42537176..42537182,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42537176..42537182, -
3.07e-86FFCP PHASE2:Mm9::chr8:126864466..126864469,+#_8723413afa513aaa41c0931e096ed76ap@chr8:126864466..126864469, +
3.07e-86FFCP PHASE2:Mm9::chr6:42551847..42551862,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42551847..42551862, -
3.07e-86FFCP PHASE1:Mm9::chr6:134172953..134172958,+#_8723413afa513aaa41c0931e096ed76ap@chr6:134172953..134172958, +
3.07e-86FFCP PHASE1:Mm9::chr4:121069181..121069190,-#_8723413afa513aaa41c0931e096ed76ap@chr4:121069181..121069190, -
3.07e-86FFCP PHASE2:Mm9::chr6:42536830..42536841,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42536830..42536841, -
3.07e-86FFCP PHASE1:Mm9::chr6:42547830..42547837,-#_8723413afa513aaa41c0931e096ed76ap8@Fam115e
3.07e-86FFCP PHASE2:Mm9::chr6:42543996..42544003,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42543996..42544003, -
3.07e-86FFCP PHASE1:Mm9::chr6:42547375..42547383,-#_8723413afa513aaa41c0931e096ed76ap10@Fam115e
3.07e-86FFCP PHASE2:Mm9::chr6:42535757..42535772,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42535757..42535772, -
3.07e-86FFCP PHASE1:Mm9::chrX:75093387..75093390,-#_8723413afa513aaa41c0931e096ed76ap@chrX:75093387..75093390, -
3.07e-86FFCP PHASE1:Mm9::chr6:42535901..42535907,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42535901..42535907, -
3.07e-86FFCP PHASE1:Mm9::chr16:20186583..20186592,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20186583..20186592, +
3.07e-86FFCP PHASE2:Mm9::chr9:122970904..122970907,-#_8723413afa513aaa41c0931e096ed76ap@chr9:122970904..122970907, -
3.07e-86FFCP PHASE2:Mm9::chr6:42539866..42539870,-#_8723413afa513aaa41c0931e096ed76ap@chr6:42539866..42539870, -
3.07e-86FFCP PHASE2:Mm9::chr6:42547830..42547837,-#_8723413afa513aaa41c0931e096ed76ap8@Fam115e
3.07e-86FFCP PHASE1:Mm9::chr2:80164541..80164545,+#_8723413afa513aaa41c0931e096ed76ap@chr2:80164541..80164545, +
3.07e-86FFCP PHASE2:Mm9::chr9:36341608..36341609,-#_8723413afa513aaa41c0931e096ed76ap@chr9:36341608..36341609, -
3.07e-86FFCP PHASE1:Mm9::chr9:7867982..7867988,-#_8723413afa513aaa41c0931e096ed76ap@chr9:7867982..7867988, -
3.07e-86FFCP PHASE1:Mm9::chr9:122970758..122970759,+#_8723413afa513aaa41c0931e096ed76ap@chr9:122970758..122970759, +
3.07e-86FFCP PHASE1:Mm9::chr6:42536009..42536044,+#_8723413afa513aaa41c0931e096ed76ap@chr6:42536009..42536044, +
3.07e-86FFCP PHASE1:Mm9::chr16:20188895..20188904,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20188895..20188904, +
3.07e-86FFCP PHASE2:Mm9::chr2:80164541..80164545,+#_8723413afa513aaa41c0931e096ed76ap@chr2:80164541..80164545, +
3.07e-86FFCP PHASE2:Mm9::chr16:20188864..20188875,+#_8723413afa513aaa41c0931e096ed76ap@chr16:20188864..20188875, +
3.07e-86FFCP PHASE2:Mm9::chr16:96752893..96752921,+#_8723413afa513aaa41c0931e096ed76ap@chr16:96752893..96752921, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004902&oldid=3274389"