UBERON:0009113: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0009113 | |||
|is_a=UBERON:0000475 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=thymic region | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0000153 | |part_of=UBERON:0000153 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 11:46, 12 September 2014
| Name: | thymic region |
|---|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|---|
| part_of: | UBERON:0000153(anterior region of body) |
Children
| part of: | UBERON:0002370 (thymus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10097-102C7
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1273-19G4 (thymus, embryo E18)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
- 1362-25G7 (thymus, neonate N25)
- 1393-42G2 (thymus, neonate N30)
... further results Mouse (Mus musculus)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10097-102C7
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1273-19G4 (thymus, embryo E18)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
- 1362-25G7 (thymus, neonate N25)
- 1393-42G2 (thymus, neonate N30)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009113 (thymic region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-147 | FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_331c1a3647b16751a4bf04f5a2f0769e | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_331c1a3647b16751a4bf04f5a2f0769e | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_95d92fe8ce0839c014a896cb6478737e | p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1 |
| 8.91e-111 | FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_95d92fe8ce0839c014a896cb6478737e | p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87018900..87018905,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:87018900..87018905, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:58069758..58069762, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr11:36622593..36622605, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123636839..123636885, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_8a1b4292d0531dbc5fd700b862461d3f | p11@CD1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:200500161..200500173, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_8a1b4292d0531dbc5fd700b862461d3f | p17@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_8a1b4292d0531dbc5fd700b862461d3f | p5@ZNF215 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:227771357..227771363,+#_8a1b4292d0531dbc5fd700b862461d3f | p10@RHBDD1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:11486829..11486836, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:233184654..233184661,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:233184654..233184661, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:11486877..11486886, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:115022988..115023001, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:115023005..115023015, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:60131355..60131365, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr16:74359040..74359071, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:115023055..115023072, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr10:115023094..115023106, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_8a1b4292d0531dbc5fd700b862461d3f | p4@ENST00000374945 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:48227243..48227269, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:155273127..155273136,-#_8a1b4292d0531dbc5fd700b862461d3f | p4@AK093601 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_8a1b4292d0531dbc5fd700b862461d3f | p25@PITPNM2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87018380..87018390,-#_8a1b4292d0531dbc5fd700b862461d3f | p6@CD8A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:34517538..34517551,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr3:34517538..34517551, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr11:36589389..36589398, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr17:80866179..80866188, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_8a1b4292d0531dbc5fd700b862461d3f | p19@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:56940722..56940731, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:58069384..58069408, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158226030..158226041, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:35683004..35683015,+#_8a1b4292d0531dbc5fd700b862461d3f | p42@ARPP21 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_8a1b4292d0531dbc5fd700b862461d3f | p15@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:2084380..2084413, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158170478..158170491, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:133414662..133414671, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr20:58830826..58830835, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:233102726..233102734,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:233102726..233102734, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:57017749..57017755, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:44035233..44035242,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:44035233..44035242, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_8a1b4292d0531dbc5fd700b862461d3f | p17@APBB1IP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr20:30272266..30272271, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr20:58830799..58830808, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr18:13437980..13437986, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:47205180..47205187, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87017428..87017437,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:87017428..87017437, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:57846504..57846542,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:57846504..57846542, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123607146..123607168, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:199026759..199026762, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158332631..158332640, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr13:99628369..99628374, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:34517741..34517784,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr3:34517741..34517784, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123559773..123559784, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158260453..158260459, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:60131313..60131324, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123559708..123559720, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:99071828..99071840, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_8a1b4292d0531dbc5fd700b862461d3f | p5@ENST00000443928 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:59432175..59432191, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_8a1b4292d0531dbc5fd700b862461d3f | p13@CD1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:60131337..60131352, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_8a1b4292d0531dbc5fd700b862461d3f | p1@ENST00000555187 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:56940732..56940741, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_8a1b4292d0531dbc5fd700b862461d3f | p4@uc001wec.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:19007717..19007728,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr3:19007717..19007728, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr13:99628347..99628352, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:57926329..57926337,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:57926329..57926337, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:35682974..35682982,+#_8a1b4292d0531dbc5fd700b862461d3f | p45@ARPP21 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:44035057..44035068, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:242080265..242080277,-#_8a1b4292d0531dbc5fd700b862461d3f | p20@PASK |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr17:4090402..4090406, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:58920068..58920073, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:227771044..227771054,+#_8a1b4292d0531dbc5fd700b862461d3f | p9@RHBDD1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123560793..123560802, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr13:99628323..99628332, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_8a1b4292d0531dbc5fd700b862461d3f | p24@PITPNM2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_8a1b4292d0531dbc5fd700b862461d3f | p13@POLE |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:55776022..55776029, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr12:123627753..123627760, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_8a1b4292d0531dbc5fd700b862461d3f | p2@ENST00000374945 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr2:162762361..162762364, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr20:58830811..58830825, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:58069582..58069594, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_8a1b4292d0531dbc5fd700b862461d3f | p6@C10orf27 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158301280..158301298, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr20:58833004..58833011, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr13:99628388..99628399, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr16:49633750..49633778, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_8a1b4292d0531dbc5fd700b862461d3f | p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:194245598..194245600, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_8a1b4292d0531dbc5fd700b862461d3f | p4@ENST00000443928 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr15:58069597..58069604, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:158303678..158303720, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:55776031..55776038, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_8a1b4292d0531dbc5fd700b862461d3f | p@chr19:28877072..28877084, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_8a1b4292d0531dbc5fd700b862461d3f | p@chr1:32314477..32314482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_8a1b4292d0531dbc5fd700b862461d3f | p1@AB527792 |
