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MacroAPE 1083:6-AATCTCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;507.702;23.92;0.598;65.78!2;454.48;79.534;63.388;0.598!3;106.444;0.598;0.598;490.36!4;59.202;460.46;34.086;44.252!5;129.766;69.966;108.836;2...")
 
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07G3;0.029305!10429-106D6;0.0176439!10464-106H5;0.0133826!10827-111C8;0.0732393!10789-110H6;0.185773!10828-111C9;0.103423!10788-110H5;0.0126471!10792-110H9;0.191344!10765-110E9;0.182211!10829-111D1;0.47199!10830-111D2;0.212478!10831-111D3;0.319584!10832-111D4;0.0799188!10833-111D5;0.108125!10764-110E8;0.157385!10770-110F5;0.269585!10399-106A3;0.0692784!10400-106A4;0.308807!10405-106A9;0.337434!10834-111D6;0.241025!10835-111D7;0.108943!10836-111D8;0.284046!10837-111D9;0.120854!10699-109G6;0.129961!10802-111A1;0.320025!10796-110I4;0.329339!10010-101C1;0.511901!10810-111A9;0.0701234!10421-106C7;0.230847!10708-109H6;0.0900234!12235-129G3;0.0311408!12236-129G4;0.528284!12237-129G5;0.930135!10167-103B5;0.288102!10151-102I7;0.500986!10428-106D5;0.535856!10795-110I3;0.0782313!10805-111A4;0.187545!10052-101G7;0.291289!10189-103D9;0.112008!10589-108D4;0.650988!10425-106D2;0.22296!10427-106D4;0.00122572!10702-109G9;0.00387773!10432-106D9;0.207795!10496-107C1;0.42664!10718-109I7;0.358743!10011-101C2;0.385609!10053-101G8;0.0889554!10686-109F2;0.233674!10084-102B3;0.421355!10012-101C3;0.384657!10085-102B4;0.546523!10482-107A5;0.529548!10419-106C5;0.507878!10080-102A8;0.819484!10760-110E4;0.266989!10709-109H7;0.379043!10710-109H8;0.444836!10703-109H1;0.732135!10719-109I8;0.0810176!10642-109A3;0.0190894!10177-103C6;0.0322821!10164-103B2;0.556145!10173-103C2;0.365894!10166-103B4;0.962487!10083-102B2;0.921986!10188-103D8;0.732897!10552-107I3;0.495336!10553-107I4;0.282614!10013-101C4;0.476895!10536-107G5;0.136063!10618-108G6;0.726318!10423-106C9;0.391762!10785-110H2;0.126655!12238-129G6;0.0542055!12239-129G7;0.105979!12240-129G8;0.846593!10416-106C2;0.0265754!10801-110I9;0.377294!10766-110F1;0.787577!10824-111C5;0.0971457!10825-111C6;0.229737!10826-111C7;0.129009!10454-106G4;0.112161!10409-106B4;0.0985631!10638-108I8;0.0531936!10636-108I6;0.103792!10513-107D9;0.0296547!10420-106C6;0.083776!10082-102B1;0.233092!10014-101C5;0.0979582!10070-101I7;0.0547585!10452-106G2;0.0879814!10453-106G3;0.0504638!10449-106F8;0.0884476!10042-101F6;0.0938915!10069-101I6;0.617818!10193-103E4;0.0739784!10631-108I1;0.497098!10438-106E6;0.0425333!10488-107B2;0.138984!10196-103E7;0.1571!10071-101I8;0.048764!10071-101I8;0.406798!10041-101F5;0.992391!10451-106G1;0.365193!10450-106F9;0.0168859!10604-108F1;0.00135689!10605-108F2;0.0534972!10606-108F3;0.154757!10603-108E9;0.0475953!10497-107C2;0.0416184!10448-106F7;0.21117!10643-109A4;0.269313!10426-106D3;0.00895744!10431-106D8;0.194019!10197-103E8;0.331464!10443-106F2;0.0249929!10815-111B5;0.553487!10816-111B6;0.178225!10817-111B7;0.179754!10015-101C6;0.215819!10410-106B5;0.140238!10054-101G9;0.423432!10758-110E2;0.239358!10711-109H9;0.589841!10040-101F4;0.0301383!10470-106I2;0.469477!10415-106C1;0.203135!10198-103E9;0.261356!10614-108G2;0.0304812!10612-108F9;0.34074!10549-107H9;0.426724!10615-108G3;0.0802535!10487-107B1;0.107374!10433-106E1;0.389285!10688-109F4;0.225877!10444-106F3;0.668852!10444-106F3;0.0041417!10485-107A8;0.00357919!10413-106B8;0.0594854!10175-103C4;0.298915!10161-103A8;0.529161!12131-128D7;0.689778!10624-108H3;0.242587!10712-109I1;0.783889!10205-103F7;0.110361!10206-103F8;0.0880662!10207-103F9;0.0643839!10050-101G5;0.229763!10051-101G6;0.110894!10016-101C7;0.0309758!10046-101G1;0.0628174!10778-110G4;0.442857!10633-108I3;0.0231454!10818-111B8;0.162295!10819-111B9;0.0275243!10820-111C1;0.03125!10484-107A7;0.0337465!10808-111A7;0.0449978!10169-103B7;0.0274781!10153-102I9;0.589738!13425-144D5;0.629151!13433-144E4;0.137434!13437-144E8;0.0822017!11904-125F5;0.170111!11905-125F6;0.14042!10039-101F3;0.295047!10791-110H8;0.428093!10017-101C8;0.987057!10045-101F9;0.20648!10509-107D5;0.721329!10839-111E2;0.930776!10692-109F8;0.190263!10079-102A7;0.309745!10078-102A6;0.081495!10721-110A1;0.0588415!10569-108B2;0.244217!10570-108B3;0.010316!10571-108B4;0.0543004!10647-109A8;0.131982!10752-110D5;6.24858e-06!10782-110G8;0.0425094!10726-110A6;0.164702!10018-101C9;0.373067!10086-102B5;0.00535316!10182-103D2;0.812054!10165-103B3;0.612037!10499-107C4;0.466302!10408-106B3;0.243823!10019-101D1;0.959449!10068-101I5;0.317814!10075-102A3;0.425029!10077-102A5;0.0963509!10727-110A7;0.529216!10775-110G1;0.0295413!10412-106B7;0.0220271!12231-129F8;0.0784283!12232-129F9;0.242663!12233-129G1;0.328849!12234-129G2;0.312471!10414-106B9;0.253137!10170-103B8;0.104561!10183-103D3;0.566768!10150-102I6;0.532677!10174-103C3;0.634498!10155-103A2;0.585532!10038-101F2;0.564319!10838-111E1;0.541265!10759-110E3;0.01426!10514-107E1;0.0454075!10465-106H6;0.0353047!10691-109F7;0.188054!10843-111E6;0.930613!10844-111E7;0.0481578!11747-123G1;0.03008!11748-123G2;0.674106!11749-123G3;0.141196!11750-123G4;0.659516!11751-123G5;0.00102015!11840-124H4;0.00193374!11752-123G6;0.0418295!11753-123G7;0.030752!11754-123G8;0.0711547!11755-123G9;0.520143!11756-123H1;0.592736!11833-124G6;0.587174!11760-123H5;0.0388526!11836-124G9;0.434862!11758-123H3;0.740421!11835-124G8;0.0889172!11762-123H7;0.366756!11838-124H2;0.0121176!11757-123H2;0.047117!11759-123H4;0.601885!11761-123H6;0.322421!11842-124H6;0.0265713!11837-124H1;0.18277!10568-108B1;0.361155!13230-141I8;0.357599!13231-141I9;0.303825!10696-109G3;0.481182!10493-107B7;0.879482!10494-107B8;0.131802!10850-111F4;0.594416!10851-111F5;0.227508!10852-111F6;0.381115!10853-111F7;0.744944!10854-111F8;0.588468!10855-111F9;0.943197!10856-111G1;0.701549!10847-111F1;0.901537!10846-111E9;0.149698!10848-111F2;0.168591!10845-111E8;0.411133!10857-111G2;0.117522!10858-111G3;0.0975948!10156-103A3;0.112715!11901-125F2;0.669648!11902-125F3;0.322424!11903-125F4;0.381983!10689-109F5;0.343088!10648-109A9;0.148089!10784-110H1;0.23785!10744-110C6;0.570335!10772-110F7;0.317502!10474-106I6;0.24963!10600-108E6;0.0437465!10684-109E9;0.228582!12226-129F3;0.106997!12227-129F4;0.30891!10508-107D4;0.528626!10539-107G8;0.217162!10607-108F4;0.131638!10555-107I6;0.332049!10774-110F9;0.0987661!10637-108I7;0.0963516!10663-109C6;0.210041!10728-110A8;0.0739156!10729-110A9;0.247852!10430-106D7;0.218271!10730-110B1;0.0230428!10813-111B3;0.207598!10812-111B2;0.182462!10037-101F1;0.188935!10172-103C1;0.412065!10163-103B1;0.652055!10076-102A4;0.642963!10073-102A1;0.564156!10036-101E9;0.709325!10195-103E6;0.405921!10277-104E7;0.437547!10434-106E2;0.583256!10550-107I1;0.297099!10545-107H5;0.150764!10544-107H4;0.555902!10704-109H2;0.149382!10510-107D6;0.652169!10558-107I9;0.147221!10020-101D2;0.0252345!10732-110B3;0.120773!10049-101G4;0.879752!10698-109G5;0.0127953!10437-106E5;0.149877!10417-106C3;0.720819!10035-101E8;0.152083!10171-103B9;0.431826!10157-103A4;0.501413!10034-101E7;0.583451!10072-101I9;0.431888!10199-103F1;0.703807!10200-103F2;0.00129476!10697-109G4;0.0573004!10723-110A3;0.24222!10179-103C8;0.46395!10160-103A7;0.119856!10180-103C9;0.34436!10162-103A9;0.0234691!10021-101D3;0.246765!10840-111E3;0.546564!10706-109H4;0.0059744!10033-101E6;0.72325!10032-101E5;0.411261!10490-107B4;0.342004!10439-106E7;0.190937!10022-101D4;0.0495242!10176-103C5;0.0462641!10469-106I1;0.454218!10067-101I4;0.195059!10411-106B6;0.527576!10471-106I3;0.376746!10030-101E3;0.302371!10475-106I7;0.184673!10787-110H4;0.0295448!10477-106I9;0.0353025!10695-109G2;0.0503736!11771-123I7;0.392091!11772-123I8;0.0618706!11773-123I9;0.200352!10093-102C3;0.497322!10442-106F1;0.000529578!10442-106F1;0.14409!10201-103F3;0.216355!10639-108I9;0.0368108!11843-124H7;0.695225!11841-124H5;0.332257!10693-109F9;0.225002!10436-106E4;0.465276!10483-107A6;0.0850054!10282-104F3;0.094801!10023-101D5;0.0448263!10066-101I3;0.0517815!10065-101I2;0.347631!10800-110I8;0.325378!10610-108F7;0.0110086!10841-111E4;0.253854!10541-107H1;0.0980814!10842-111E5;0.0721959!10562-108A4;0.0380874!10024-101D6;0.115226!10064-101I1;0.0196115!10609-108F6;0.23584!10048-101G3;0.289068!10781-110G7;0.0278689!10181-103D1;0.602247!10159-103A6;0.665777!10056-101H2;0.863599!10737-110B8;0.588862!10025-101D7;0.222125!10044-101F8;0.602649!10424-106D1;0.934897!10463-106H4;0.0245929!10616-108G4;0.267438!10486-107A9;0.50219!10062-101H8;0.679804!10202-103F4;0.449371!10158-103A5;0.00355592!10441-106E9;0.767778!10031-101E4;0.00511091!10063-101H9;0.404251!10063-101H9;0.75483!11763-123H8;0.0354733!11765-123I1;0.120353!11768-123I4;0.0158035!10807-111A6;0.138146!10790-110H7;0.107628!10798-110I6;0.029169!10786-110H3;0.0567593!10591-108D6;0.00473381!10593-108D8;0.0097023!10590-108D5;0.0188438!10026-101D8;0.0292938!10096-102C6;0.0922983!10168-103B6;0.182658!10154-103A1;0.459415!10209-103G2;0.575154!10061-101H7;0.105249!10027-101D9;0.3035!10043-101F7;0.0248162!10783-110G9;0.174635!10028-101E1;0.489301!10060-101H6;0.0889442!10203-103F5;0.144666!10059-101H5;0.0574496!10047-101G2;0.102296!10029-101E2;0.563212!10058-101H4;0.0588256!10418-106C4;0.184207!10492-107B6;0.0165874!10694-109G1;0.0530934!10797-110I5;0.942184!10057-101H3;0.782278!10100-102D1;0.284475!10055-101H1;0.167934!10204-103F6;0.515934!10191-103E2;0.148775!10563-108A5;0.132745
|name=6-AATCTCGC,BestGuess:MA0038.1_Gfi(0.689546444014436),T:598.0(32.24%),B:9791.7(21.07%),P:1e-27
|name=6-AATCTCGC,BestGuess:MA0038.1_Gfi(0.689546444014436),T:598.0(32.24%),B:9791.7(21.07%),P:1e-27
|tomtom_result=DAL81#MA0290.1;0;0.0017562;0.835952;1;8;AATCTCGC;AATCCCGCCCGCGGCTTTT;-!Pax2#MA0067.1;0;0.00896199;4.26591;1;8;AATCTCGC;AGTCACGG;+!Gfi#MA0038.1;2;0.0111573;5.3109;1;8;AATCTCGC;CAAATCACTG;+!z#MA0255.1;0;0.0160917;7.65963;1;8;AATCTCGC;AATCACTCAA;-
}}
}}

Latest revision as of 13:08, 7 September 2012

Full Name: 6-AATCTCGC,BestGuess:MA0038.1_Gfi(0.689546444014436),T:598.0(32.24%),B:9791.7(21.07%),P:1e-27

Motif matrix
POACGT
1507.70223.920.59865.78
2454.4879.53463.3880.598
3106.4440.5980.598490.36
459.202460.4634.08644.252
5129.76669.966108.836288.834
686.71438.33415.54857.408
710.16661.594469.4356.81
80.598502.3258.00637.076

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
DAL81#MA0290.100.00175620.83595218AATCTCGCAATCCCGCCCGCGGCTTTT-
Pax2#MA0067.100.008961994.2659118AATCTCGCAGTCACGG+
Gfi#MA0038.120.01115735.310918AATCTCGCCAAATCACTG+
z#MA0255.100.01609177.6596318AATCTCGCAATCACTCAA-
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