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MacroAPE 1083:Motif GTNACC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;2464;0!02;0;0;0;2464!03;616;616;616;616!04;2464;0;0;0!05;0;2464;0;0!06;0;2464;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.619908!1...")
 
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10850-111F4;0.875514!10851-111F5;0.490754!10852-111F6;0.365537!10853-111F7;0.446606!10854-111F8;0.717611!10855-111F9;0.353259!10856-111G1;0.274702!10847-111F1;0.421165!10846-111E9;0.426762!10848-111F2;0.459063!10845-111E8;0.786117!10857-111G2;0.750542!10858-111G3;0.533477!10156-103A3;0.62512!11901-125F2;0.36918!11902-125F3;0.909543!11903-125F4;0.797256!10689-109F5;0.49231!10648-109A9;0.302004!10784-110H1;0.654882!10744-110C6;0.552345!10772-110F7;0.70549!10474-106I6;0.358103!10600-108E6;0.466985!10684-109E9;0.741801!12226-129F3;0.281453!12227-129F4;0.109652!10508-107D4;0.374857!10539-107G8;0.0362307!10607-108F4;0.247948!10555-107I6;0.799158!10774-110F9;0.183695!10637-108I7;0.26998!10663-109C6;0.255489!10728-110A8;0.0488411!10729-110A9;0.0538792!10430-106D7;0.356759!10730-110B1;0.708445!10813-111B3;0.377501!10812-111B2;0.528164!10037-101F1;0.566678!10172-103C1;0.419858!10163-103B1;0.637353!10076-102A4;0.401034!10073-102A1;0.472124!10036-101E9;0.385553!10195-103E6;0.468562!10277-104E7;0.386884!10434-106E2;0.456028!10550-107I1;0.292376!10545-107H5;0.412166!10544-107H4;0.217238!10704-109H2;0.255181!10510-107D6;0.93027!10558-107I9;0.876906!10020-101D2;0.184734!10732-110B3;0.248012!10049-101G4;0.802356!10698-109G5;0.856439!10437-106E5;0.391132!10417-106C3;0.864965!10035-101E8;0.0715819!10171-103B9;0.473986!10157-103A4;0.38034!10034-101E7;0.45324!10072-101I9;0.472681!10199-103F1;0.388193!10200-103F2;0.430995!10697-109G4;0.818733!10723-110A3;0.620132!10179-103C8;0.263469!10160-103A7;0.582576!10180-103C9;0.44017!10162-103A9;0.652487!10021-101D3;0.958255!10840-111E3;0.874839!10706-109H4;0.24868!10033-101E6;0.758437!10032-101E5;0.568157!10490-107B4;0.48093!10439-106E7;0.662856!10022-101D4;0.88557!10176-103C5;0.402165!10469-106I1;0.3967!10067-101I4;0.10368!10411-106B6;0.506767!10471-106I3;0.861643!10030-101E3;0.620619!10475-106I7;0.5441!10787-110H4;0.429764!10477-106I9;0.891139!10695-109G2;0.0375761!11771-123I7;0.743084!11772-123I8;0.978829!11773-123I9;0.475919!10093-102C3;0.772053!10442-106F1;0.877047!10442-106F1;0.133884!10201-103F3;0.112637!10639-108I9;0.481052!11843-124H7;0.0675409!11841-124H5;0.52597!10693-109F9;0.499012!10436-106E4;0.0881828!10483-107A6;0.106356!10282-104F3;0.251357!10023-101D5;0.641456!10066-101I3;0.927005!10065-101I2;0.670539!10800-110I8;0.915394!10610-108F7;0.369894!10841-111E4;0.914702!10541-107H1;0.866721!10842-111E5;0.939245!10562-108A4;0.140118!10024-101D6;0.222067!10064-101I1;0.718405!10609-108F6;0.884131!10048-101G3;0.169446!10781-110G7;0.551735!10181-103D1;0.278539!10159-103A6;0.45127!10056-101H2;0.502933!10737-110B8;0.530512!10025-101D7;0.568137!10044-101F8;0.276697!10424-106D1;0.489395!10463-106H4;0.500219!10616-108G4;0.175595!10486-107A9;0.204998!10062-101H8;0.121012!10202-103F4;0.877152!10158-103A5;0.641157!10441-106E9;0.370752!10031-101E4;0.52826!10063-101H9;0.458628!10063-101H9;0.290132!11763-123H8;0.996149!11765-123I1;0.306049!11768-123I4;0.256782!10807-111A6;0.12989!10790-110H7;0.687996!10798-110I6;0.575025!10786-110H3;0.851115!10591-108D6;0.766091!10593-108D8;0.941705!10590-108D5;0.890495!10026-101D8;0.992251!10096-102C6;0.495249!10168-103B6;0.765583!10154-103A1;0.44141!10209-103G2;0.325114!10061-101H7;0.873805!10027-101D9;0.810769!10043-101F7;0.82636!10783-110G9;0.844904!10028-101E1;0.683948!10060-101H6;0.699415!10203-103F5;0.941034!10059-101H5;0.734736!10047-101G2;0.826586!10029-101E2;0.956361!10058-101H4;0.820725!10418-106C4;0.796059!10492-107B6;0.141361!10694-109G1;0.632617!10797-110I5;0.524052!10057-101H3;0.398405!10100-102D1;0.955397!10055-101H1;0.393206!10204-103F6;0.337769!10191-103E2;0.595507!10563-108A5;0.804644
|name=motif_GTNACC
|name=motif_GTNACC
|tomtom_result=NR4A2#MA0160.1;0;0.00185452;0.882752;0.637868;6;GTAACC;GTGACCTT;-!usp#MA0016.1;2;0.00189271;0.900931;0.637868;6;GTAACC;CCGTGACCCC;-!REB1#MA0363.1;0;0.00298168;1.41928;0.637868;6;GTAACC;GTTACCCGG;+!PPARG#MA0066.1;10;0.00315033;1.49956;0.637868;6;GTAACC;GTAGGTCACGGTGACCTACT;+!Spz1#MA0111.1;3;0.00335454;1.59676;0.637868;6;GTAACC;GCTGTTACCCT;-!ESR1#MA0112.2;9;0.00460216;2.19063;0.723423;6;GTAACC;GGGGTCACGGTGACCTGG;-!CREB1#MA0018.1;3;0.0077058;3.66796;0.723423;6;GTAACC;GACGTCACCAGG;-!ESR1#MA0112.2;8;0.00836526;3.98186;0.723423;6;GTAACC;AGGTCAGGGTGACCTGGGCC;-!HLF#MA0043.1;6;0.00836984;3.98404;0.723423;6;GTAACC;TATTACGTAACC;-!bZIP911#MA0097.1;6;0.00945334;4.49979;0.748983;6;GTAACC;GGCCACGTCATC;-!LEU3#MA0324.1;2;0.0108045;5.14295;0.756224;6;GTAACC;CCGTTACCGG;+!ESR2#MA0258.1;10;0.0161312;7.67845;0.98507;6;GTAACC;CAAGGTCACGGTGACCTG;+!ovo#MA0126.1;1;0.0176136;8.38407;0.98507;6;GTAACC;AGTAACAGT;+!prd#MA0239.1;1;0.0176136;8.38407;0.98507;6;GTAACC;AGTAACAGT;+
}}
}}

Latest revision as of 13:16, 7 September 2012

Full Name: motif_GTNACC

Motif matrix
POACGT
010024640
020002464
03616616616616
042464000
050246400
060246400

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NR4A2#MA0160.100.001854520.8827520.6378686GTAACCGTGACCTT-
usp#MA0016.120.001892710.9009310.6378686GTAACCCCGTGACCCC-
REB1#MA0363.100.002981681.419280.6378686GTAACCGTTACCCGG+
PPARG#MA0066.1100.003150331.499560.6378686GTAACCGTAGGTCACGGTGACCTACT+
Spz1#MA0111.130.003354541.596760.6378686GTAACCGCTGTTACCCT-
ESR1#MA0112.290.004602162.190630.7234236GTAACCGGGGTCACGGTGACCTGG-
CREB1#MA0018.130.00770583.667960.7234236GTAACCGACGTCACCAGG-
ESR1#MA0112.280.008365263.981860.7234236GTAACCAGGTCAGGGTGACCTGGGCC-
HLF#MA0043.160.008369843.984040.7234236GTAACCTATTACGTAACC-
bZIP911#MA0097.160.009453344.499790.7489836GTAACCGGCCACGTCATC-
LEU3#MA0324.120.01080455.142950.7562246GTAACCCCGTTACCGG+
ESR2#MA0258.1100.01613127.678450.985076GTAACCCAAGGTCACGGTGACCTG+
ovo#MA0126.110.01761368.384070.985076GTAACCAGTAACAGT+
prd#MA0239.110.01761368.384070.985076GTAACCAGTAACAGT+
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